HEADER BIOSYNTHETIC PROTEIN 26-MAR-10 2XA2 TITLE CRYSTAL STRUCTURE OF TREHALOSE SYNTHASE TRET MUTANT E326A FROM TITLE 2 P.HORIKOSHII IN COMPLEX WITH UDPG COMPND MOL_ID: 1; COMPND 2 MOLECULE: TREHALOSE-SYNTHASE TRET; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PH1035; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS HORIKOSHII; SOURCE 3 ORGANISM_TAXID: 53953; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: MC1061(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P6XHIS119; SOURCE 9 OTHER_DETAILS: HYPERTHERMOPHILIC ARCHAEON KEYWDS BIOSYNTHETIC PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR H.-N.SONG,T.-Y.JUNG,S.-M.YOON,S.-B.LEE,M.-Y.LIM,E.-J.WOO REVDAT 1 16-MAR-11 2XA2 0 JRNL AUTH E.-J.WOO,S.RYU,H.-N.SONG,T.-Y.JUNG,S.YEON,H.LEE,B.C.PARK, JRNL AUTH 2 K.PARK,S.-B.LEE JRNL TITL STRUCTURAL INSIGHTS ON THE NEW MECHANISM OF TREHALOSE JRNL TITL 2 SYNTHESIS BY TREHALOSE SYNTHASE TRET FROM PYROCOCCUS JRNL TITL 3 HORIKOSHII. JRNL REF J.MOL.BIOL. V. 404 247 2010 JRNL REFN ISSN 0022-2836 JRNL PMID 20888836 JRNL DOI 10.1016/J.JMB.2010.09.056 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.36 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.0 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 78510.38 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.000000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 81.6 REMARK 3 NUMBER OF REFLECTIONS : 25993 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.275 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.8 REMARK 3 FREE R VALUE TEST SET COUNT : 1256 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.008 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.66 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 65.5 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3274 REMARK 3 BIN R VALUE (WORKING SET) : 0.309 REMARK 3 BIN FREE R VALUE : 0.340 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.0 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 171 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.026 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6748 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 72 REMARK 3 SOLVENT ATOMS : 120 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.6 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.6 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.46 REMARK 3 B22 (A**2) : -2.92 REMARK 3 B33 (A**2) : 7.37 REMARK 3 B12 (A**2) : 0.00 REMARK 3 B13 (A**2) : 1.10 REMARK 3 B23 (A**2) : 0.00 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.33 REMARK 3 ESD FROM SIGMAA (A) : 0.45 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.42 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.52 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.5 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.2 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.00 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.59 ; 1.50 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.73 ; 2.00 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.15 ; 2.00 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.45 ; 2.50 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.35 REMARK 3 BSOL : 38.7909 REMARK 3 REMARK 3 NCS MODEL : NONE REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : ION.PARAM REMARK 3 PARAMETER FILE 3 : WATER.PARAM REMARK 3 PARAMETER FILE 4 : UPG_XPLOR_PAR.TXT REMARK 3 TOPOLOGY FILE 1 : PROTEIN_REP.TOP REMARK 3 TOPOLOGY FILE 2 : ION.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : UPG_XPLOR_PAR.TXT REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED REMARK 4 REMARK 4 2XA2 COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-MAR-10. REMARK 100 THE PDBE ID CODE IS EBI-43424. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-DEC-05 REMARK 200 TEMPERATURE (KELVIN) : 297 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.2399 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL2000 REMARK 200 DATA SCALING SOFTWARE : HKL2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25993 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.50 REMARK 200 RESOLUTION RANGE LOW (A) : 30.00 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 80.9 REMARK 200 DATA REDUNDANCY : 3.9 REMARK 200 R MERGE (I) : 0.09 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.60 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 30.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 62.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.1 REMARK 200 R MERGE FOR SHELL (I) : 0.29 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.85 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG3350 25%, 0.2M MGCL2, 0.1M SODIUM REMARK 280 HEPES BUFFER, 5MM UDPG, PH 8.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 31.56950 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, GLU 326 TO ALA REMARK 400 ENGINEERED RESIDUE IN CHAIN B, GLU 326 TO ALA REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 GLY A 416 REMARK 465 MET B 1 REMARK 465 LYS B 2 REMARK 465 GLY B 416 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLY A 415 CA C O REMARK 470 GLY B 415 CA C O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 67 CD - NE - CZ ANGL. DEV. = 9.5 DEGREES REMARK 500 ARG A 67 NE - CZ - NH1 ANGL. DEV. = -7.0 DEGREES REMARK 500 ARG A 67 NE - CZ - NH2 ANGL. DEV. = 6.8 DEGREES REMARK 500 ARG A 116 NE - CZ - NH1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG A 116 NE - CZ - NH2 ANGL. DEV. = -6.0 DEGREES REMARK 500 ARG A 170 CD - NE - CZ ANGL. DEV. = 8.9 DEGREES REMARK 500 ARG A 170 NE - CZ - NH1 ANGL. DEV. = -6.7 DEGREES REMARK 500 ARG A 170 NE - CZ - NH2 ANGL. DEV. = 6.4 DEGREES REMARK 500 ARG B 67 CD - NE - CZ ANGL. DEV. = 9.7 DEGREES REMARK 500 ARG B 67 NE - CZ - NH1 ANGL. DEV. = 6.6 DEGREES REMARK 500 ARG B 67 NE - CZ - NH2 ANGL. DEV. = -6.5 DEGREES REMARK 500 ARG B 116 CD - NE - CZ ANGL. DEV. = 8.7 DEGREES REMARK 500 ARG B 116 NE - CZ - NH1 ANGL. DEV. = -6.4 DEGREES REMARK 500 ARG B 116 NE - CZ - NH2 ANGL. DEV. = 6.1 DEGREES REMARK 500 ARG B 170 CD - NE - CZ ANGL. DEV. = 8.4 DEGREES REMARK 500 ARG B 170 NE - CZ - NH1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ARG B 170 NE - CZ - NH2 ANGL. DEV. = -6.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 4 -159.86 -89.72 REMARK 500 LYS A 7 -65.23 60.98 REMARK 500 GLU A 8 -156.18 -83.67 REMARK 500 PHE A 9 -163.55 -170.67 REMARK 500 SER A 10 -35.72 -136.42 REMARK 500 LYS A 13 51.01 -98.09 REMARK 500 LEU A 16 -33.43 -34.31 REMARK 500 LYS A 30 -32.91 -37.13 REMARK 500 LYS A 34 -7.34 -56.36 REMARK 500 PHE A 51 -91.24 -105.62 REMARK 500 SER A 68 6.01 -55.95 REMARK 500 GLN A 96 59.49 -98.16 REMARK 500 ASP A 123 91.54 -69.78 REMARK 500 ASP A 134 169.18 65.17 REMARK 500 GLN A 136 -51.41 -22.27 REMARK 500 LEU A 158 42.23 -141.19 REMARK 500 TYR A 176 152.47 -35.47 REMARK 500 GLU A 185 -8.41 -150.34 REMARK 500 ARG A 193 -17.81 -45.62 REMARK 500 PRO A 201 -167.70 -72.54 REMARK 500 PRO A 242 -13.37 -49.48 REMARK 500 PRO A 261 -5.99 -49.38 REMARK 500 ASP A 275 75.28 -106.47 REMARK 500 GLU A 291 35.28 -84.96 REMARK 500 GLN A 321 72.37 -159.21 REMARK 500 MET A 322 48.76 -86.03 REMARK 500 HIS A 379 66.62 -111.92 REMARK 500 ASN A 397 -35.45 -130.86 REMARK 500 SER B 11 48.47 -78.61 REMARK 500 LYS B 30 -32.57 -36.61 REMARK 500 LYS B 34 -7.84 -55.99 REMARK 500 PHE B 51 -91.26 -105.22 REMARK 500 SER B 68 6.29 -56.84 REMARK 500 GLN B 96 59.53 -97.91 REMARK 500 ASP B 123 91.39 -69.61 REMARK 500 ASP B 134 168.05 63.95 REMARK 500 GLN B 136 -51.06 -23.27 REMARK 500 LEU B 158 43.09 -141.64 REMARK 500 TYR B 176 152.30 -36.79 REMARK 500 GLU B 185 -9.59 -150.60 REMARK 500 ARG B 193 -18.09 -46.64 REMARK 500 PRO B 201 -178.69 -68.38 REMARK 500 PRO B 205 -16.69 -49.32 REMARK 500 PRO B 242 -13.08 -49.11 REMARK 500 PRO B 261 -6.24 -49.60 REMARK 500 ASP B 275 75.46 -106.47 REMARK 500 GLU B 291 35.86 -85.68 REMARK 500 GLN B 321 72.16 -160.38 REMARK 500 MET B 322 48.14 -85.91 REMARK 500 HIS B 379 65.97 -111.19 REMARK 500 REMARK 500 THIS ENTRY HAS 51 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UPG A1415 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UPG B1415 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2XA9 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF TREHALOSE SYNTHASE TRET MUTANT REMARK 900 E326A FROM P.HORIKOSHII IN COMPLEX WITH UDPG REMARK 900 RELATED ID: 2XA2 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF TREHALOSE SYNTHASE TRET MUTANT REMARK 900 E326A FROM P.HORIKOSHII IN COMPLEX WITH UDPG DBREF 2XA2 A 1 416 UNP O58762 O58762_PYRHO 1 416 DBREF 2XA2 B 1 416 UNP O58762 O58762_PYRHO 1 416 SEQADV 2XA2 ALA A 326 UNP O58762 GLU 326 ENGINEERED MUTATION SEQADV 2XA2 VAL A 372 UNP O58762 LYS 372 CONFLICT SEQADV 2XA2 ALA B 326 UNP O58762 GLU 326 ENGINEERED MUTATION SEQADV 2XA2 VAL B 372 UNP O58762 LYS 372 CONFLICT SEQRES 1 A 416 MET LYS MET TYR GLU VAL LYS GLU PHE SER SER GLY LYS SEQRES 2 A 416 ARG LYS LEU GLU ASP TYR LYS SER ILE ILE GLY GLU GLU SEQRES 3 A 416 GLU VAL SER LYS ILE GLN GLU LYS ALA GLU LYS LEU LYS SEQRES 4 A 416 GLY ARG SER PHE VAL HIS VAL ASN SER THR SER PHE GLY SEQRES 5 A 416 GLY GLY VAL ALA GLU ILE LEU HIS SER LEU VAL PRO LEU SEQRES 6 A 416 LEU ARG SER ILE GLY ILE GLU ALA ARG TRP PHE VAL ILE SEQRES 7 A 416 GLU GLY PRO THR GLU PHE PHE ASN VAL THR LYS THR PHE SEQRES 8 A 416 HIS ASN ALA LEU GLN GLY ASN GLU SER LEU LYS LEU THR SEQRES 9 A 416 GLU GLU MET LYS GLU LEU TYR LEU ASN VAL ASN ARG GLU SEQRES 10 A 416 ASN SER LYS PHE ILE ASP LEU SER SER PHE ASP TYR VAL SEQRES 11 A 416 LEU VAL HIS ASP PRO GLN PRO ALA ALA LEU ILE GLU PHE SEQRES 12 A 416 TYR GLU LYS LYS SER PRO TRP LEU TRP ARG CYS HIS ILE SEQRES 13 A 416 ASP LEU SER SER PRO ASN ARG GLU PHE TRP GLU PHE LEU SEQRES 14 A 416 ARG ARG PHE VAL GLU LYS TYR ASP ARG TYR ILE PHE HIS SEQRES 15 A 416 LEU PRO GLU TYR VAL GLN PRO GLU LEU ASP ARG ASN LYS SEQRES 16 A 416 ALA VAL ILE MET PRO PRO SER ILE ASP PRO LEU SER GLU SEQRES 17 A 416 LYS ASN VAL GLU LEU LYS GLN THR GLU ILE LEU ARG ILE SEQRES 18 A 416 LEU GLU ARG PHE ASP VAL ASP PRO GLU LYS PRO ILE ILE SEQRES 19 A 416 THR GLN VAL SER ARG PHE ASP PRO TRP LYS GLY ILE PHE SEQRES 20 A 416 ASP VAL ILE GLU ILE TYR ARG LYS VAL LYS GLU LYS ILE SEQRES 21 A 416 PRO GLY VAL GLN LEU LEU LEU VAL GLY VAL MET ALA HIS SEQRES 22 A 416 ASP ASP PRO GLU GLY TRP ILE TYR PHE GLU LYS THR LEU SEQRES 23 A 416 ARG LYS ILE GLY GLU ASP TYR ASP VAL LYS VAL LEU THR SEQRES 24 A 416 ASN LEU ILE GLY VAL HIS ALA ARG GLU VAL ASN ALA PHE SEQRES 25 A 416 GLN ARG ALA SER ASP VAL ILE LEU GLN MET SER ILE ARG SEQRES 26 A 416 ALA GLY PHE GLY LEU THR VAL THR GLU ALA MET TRP LYS SEQRES 27 A 416 GLY LYS PRO VAL ILE GLY ARG ALA VAL GLY GLY ILE LYS SEQRES 28 A 416 PHE GLN ILE VAL ASP GLY GLU THR GLY PHE LEU VAL ARG SEQRES 29 A 416 ASP ALA ASN GLU ALA VAL GLU VAL VAL LEU TYR LEU LEU SEQRES 30 A 416 LYS HIS PRO GLU VAL SER LYS GLU MET GLY ALA LYS ALA SEQRES 31 A 416 LYS GLU ARG VAL ARG LYS ASN PHE ILE ILE THR LYS HIS SEQRES 32 A 416 MET GLU ARG TYR LEU ASP ILE LEU ASN SER LEU GLY GLY SEQRES 1 B 416 MET LYS MET TYR GLU VAL LYS GLU PHE SER SER GLY LYS SEQRES 2 B 416 ARG LYS LEU GLU ASP TYR LYS SER ILE ILE GLY GLU GLU SEQRES 3 B 416 GLU VAL SER LYS ILE GLN GLU LYS ALA GLU LYS LEU LYS SEQRES 4 B 416 GLY ARG SER PHE VAL HIS VAL ASN SER THR SER PHE GLY SEQRES 5 B 416 GLY GLY VAL ALA GLU ILE LEU HIS SER LEU VAL PRO LEU SEQRES 6 B 416 LEU ARG SER ILE GLY ILE GLU ALA ARG TRP PHE VAL ILE SEQRES 7 B 416 GLU GLY PRO THR GLU PHE PHE ASN VAL THR LYS THR PHE SEQRES 8 B 416 HIS ASN ALA LEU GLN GLY ASN GLU SER LEU LYS LEU THR SEQRES 9 B 416 GLU GLU MET LYS GLU LEU TYR LEU ASN VAL ASN ARG GLU SEQRES 10 B 416 ASN SER LYS PHE ILE ASP LEU SER SER PHE ASP TYR VAL SEQRES 11 B 416 LEU VAL HIS ASP PRO GLN PRO ALA ALA LEU ILE GLU PHE SEQRES 12 B 416 TYR GLU LYS LYS SER PRO TRP LEU TRP ARG CYS HIS ILE SEQRES 13 B 416 ASP LEU SER SER PRO ASN ARG GLU PHE TRP GLU PHE LEU SEQRES 14 B 416 ARG ARG PHE VAL GLU LYS TYR ASP ARG TYR ILE PHE HIS SEQRES 15 B 416 LEU PRO GLU TYR VAL GLN PRO GLU LEU ASP ARG ASN LYS SEQRES 16 B 416 ALA VAL ILE MET PRO PRO SER ILE ASP PRO LEU SER GLU SEQRES 17 B 416 LYS ASN VAL GLU LEU LYS GLN THR GLU ILE LEU ARG ILE SEQRES 18 B 416 LEU GLU ARG PHE ASP VAL ASP PRO GLU LYS PRO ILE ILE SEQRES 19 B 416 THR GLN VAL SER ARG PHE ASP PRO TRP LYS GLY ILE PHE SEQRES 20 B 416 ASP VAL ILE GLU ILE TYR ARG LYS VAL LYS GLU LYS ILE SEQRES 21 B 416 PRO GLY VAL GLN LEU LEU LEU VAL GLY VAL MET ALA HIS SEQRES 22 B 416 ASP ASP PRO GLU GLY TRP ILE TYR PHE GLU LYS THR LEU SEQRES 23 B 416 ARG LYS ILE GLY GLU ASP TYR ASP VAL LYS VAL LEU THR SEQRES 24 B 416 ASN LEU ILE GLY VAL HIS ALA ARG GLU VAL ASN ALA PHE SEQRES 25 B 416 GLN ARG ALA SER ASP VAL ILE LEU GLN MET SER ILE ARG SEQRES 26 B 416 ALA GLY PHE GLY LEU THR VAL THR GLU ALA MET TRP LYS SEQRES 27 B 416 GLY LYS PRO VAL ILE GLY ARG ALA VAL GLY GLY ILE LYS SEQRES 28 B 416 PHE GLN ILE VAL ASP GLY GLU THR GLY PHE LEU VAL ARG SEQRES 29 B 416 ASP ALA ASN GLU ALA VAL GLU VAL VAL LEU TYR LEU LEU SEQRES 30 B 416 LYS HIS PRO GLU VAL SER LYS GLU MET GLY ALA LYS ALA SEQRES 31 B 416 LYS GLU ARG VAL ARG LYS ASN PHE ILE ILE THR LYS HIS SEQRES 32 B 416 MET GLU ARG TYR LEU ASP ILE LEU ASN SER LEU GLY GLY HET UPG A1415 36 HET UPG B1415 36 HETNAM UPG URIDINE-5'-DIPHOSPHATE-GLUCOSE HETSYN UPG URIDINE-5'-MONOPHOSPHATE GLUCOPYRANOSYL-MONOPHOSPHATE HETSYN 2 UPG ESTER FORMUL 3 UPG 2(C15 H24 N2 O17 P2) FORMUL 4 HOH *120(H2 O) HELIX 1 1 LYS A 15 ASP A 18 5 4 HELIX 2 2 TYR A 19 ALA A 35 1 17 HELIX 3 3 GLY A 53 SER A 68 1 16 HELIX 4 4 PRO A 81 GLN A 96 1 16 HELIX 5 5 THR A 104 ASN A 118 1 15 HELIX 6 6 SER A 119 PHE A 121 5 3 HELIX 7 7 ASP A 123 PHE A 127 5 5 HELIX 8 8 PRO A 137 PHE A 143 5 7 HELIX 9 9 ASN A 162 GLU A 174 1 13 HELIX 10 10 ASP A 192 ASN A 194 5 3 HELIX 11 11 LYS A 214 PHE A 225 1 12 HELIX 12 12 GLY A 245 ILE A 260 1 16 HELIX 13 13 ASP A 275 GLY A 290 1 16 HELIX 14 14 LEU A 301 GLY A 303 5 3 HELIX 15 15 HIS A 305 ALA A 315 1 11 HELIX 16 16 GLY A 329 LYS A 338 1 10 HELIX 17 17 VAL A 347 ILE A 354 1 8 HELIX 18 18 ASP A 365 HIS A 379 1 15 HELIX 19 19 HIS A 379 PHE A 398 1 20 HELIX 20 20 ILE A 399 ASN A 412 1 14 HELIX 21 21 LYS B 15 ASP B 18 5 4 HELIX 22 22 TYR B 19 ALA B 35 1 17 HELIX 23 23 GLY B 53 SER B 68 1 16 HELIX 24 24 PRO B 81 GLN B 96 1 16 HELIX 25 25 THR B 104 ASN B 118 1 15 HELIX 26 26 SER B 119 PHE B 121 5 3 HELIX 27 27 ASP B 123 PHE B 127 5 5 HELIX 28 28 PRO B 137 PHE B 143 5 7 HELIX 29 29 ASN B 162 GLU B 174 1 13 HELIX 30 30 ASP B 192 ASN B 194 5 3 HELIX 31 31 LYS B 214 PHE B 225 1 12 HELIX 32 32 GLY B 245 ILE B 260 1 16 HELIX 33 33 ASP B 275 GLY B 290 1 16 HELIX 34 34 LEU B 301 GLY B 303 5 3 HELIX 35 35 HIS B 305 ALA B 315 1 11 HELIX 36 36 GLY B 329 LYS B 338 1 10 HELIX 37 37 VAL B 347 ILE B 354 1 8 HELIX 38 38 ASP B 365 HIS B 379 1 15 HELIX 39 39 HIS B 379 PHE B 398 1 20 HELIX 40 40 ILE B 399 ASN B 412 1 14 SHEET 1 AA 6 GLU A 72 VAL A 77 0 SHEET 2 AA 6 SER A 42 ASN A 47 1 O PHE A 43 N ARG A 74 SHEET 3 AA 6 TYR A 129 HIS A 133 1 O TYR A 129 N VAL A 44 SHEET 4 AA 6 TRP A 150 ARG A 153 1 O LEU A 151 N VAL A 132 SHEET 5 AA 6 ARG A 178 PHE A 181 1 O ARG A 178 N TRP A 152 SHEET 6 AA 6 ALA A 196 ILE A 198 1 O VAL A 197 N PHE A 181 SHEET 1 AB 6 VAL A 295 THR A 299 0 SHEET 2 AB 6 GLN A 264 GLY A 269 1 O LEU A 265 N LYS A 296 SHEET 3 AB 6 ILE A 233 VAL A 237 1 O ILE A 234 N LEU A 266 SHEET 4 AB 6 VAL A 318 GLN A 321 1 O VAL A 318 N THR A 235 SHEET 5 AB 6 VAL A 342 ARG A 345 1 O ILE A 343 N GLN A 321 SHEET 6 AB 6 GLY A 360 VAL A 363 1 O PHE A 361 N GLY A 344 SHEET 1 BA 7 GLU B 5 VAL B 6 0 SHEET 2 BA 7 GLU B 72 VAL B 77 -1 O TRP B 75 N VAL B 6 SHEET 3 BA 7 SER B 42 ASN B 47 1 O PHE B 43 N ARG B 74 SHEET 4 BA 7 TYR B 129 HIS B 133 1 O TYR B 129 N VAL B 44 SHEET 5 BA 7 TRP B 150 ARG B 153 1 O LEU B 151 N VAL B 132 SHEET 6 BA 7 ARG B 178 PHE B 181 1 O ARG B 178 N TRP B 152 SHEET 7 BA 7 ALA B 196 ILE B 198 1 O VAL B 197 N PHE B 181 SHEET 1 BB 6 VAL B 295 THR B 299 0 SHEET 2 BB 6 GLN B 264 GLY B 269 1 O LEU B 265 N LYS B 296 SHEET 3 BB 6 ILE B 233 VAL B 237 1 O ILE B 234 N LEU B 266 SHEET 4 BB 6 VAL B 318 GLN B 321 1 O VAL B 318 N THR B 235 SHEET 5 BB 6 VAL B 342 ARG B 345 1 O ILE B 343 N GLN B 321 SHEET 6 BB 6 GLY B 360 VAL B 363 1 O PHE B 361 N GLY B 344 SITE 1 AC1 16 HIS A 92 GLN A 96 HIS A 155 ILE A 156 SITE 2 AC1 16 LYS A 209 SER A 238 ARG A 239 LYS A 244 SITE 3 AC1 16 GLY A 269 VAL A 270 GLY A 327 PHE A 328 SITE 4 AC1 16 GLY A 329 LEU A 330 THR A 331 GLU A 334 SITE 1 AC2 14 GLN B 96 HIS B 155 ILE B 156 LYS B 209 SITE 2 AC2 14 SER B 238 ARG B 239 LYS B 244 GLY B 269 SITE 3 AC2 14 VAL B 270 GLY B 327 PHE B 328 GLY B 329 SITE 4 AC2 14 LEU B 330 GLU B 334 CRYST1 80.844 63.139 91.517 90.00 98.83 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012370 0.000000 0.001922 0.00000 SCALE2 0.000000 0.015838 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011058 0.00000