HEADER PHOTOSYNTHESIS 09-APR-10 2XBG TITLE CRYSTAL STRUCTURE OF YCF48 FROM THERMOSYNECHOCOCCUS ELONGATUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: YCF48-LIKE PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOSYNECHOCOCCUS ELONGATUS; SOURCE 3 ORGANISM_TAXID: 146786; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: KRX; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PRSET-A KEYWDS PHOTOSYNTHESIS, PHOTOSYSTEM II, BETA-PROPELLER, ASSEMBLY FACTOR EXPDTA X-RAY DIFFRACTION AUTHOR F.MICHOUX,K.TAKASAKA,P.NIXON,J.W.MURRAY REVDAT 3 08-MAY-24 2XBG 1 REMARK REVDAT 2 29-AUG-18 2XBG 1 JRNL REVDAT 1 13-APR-11 2XBG 0 JRNL AUTH J.YU,J.KNOPPOVA,F.MICHOUX,W.BIALEK,E.COTA,M.K.SHUKLA, JRNL AUTH 2 A.STRASKOVA,G.PASCUAL AZNAR,R.SOBOTKA,J.KOMENDA,J.W.MURRAY, JRNL AUTH 3 P.J.NIXON JRNL TITL YCF48 INVOLVED IN THE BIOGENESIS OF THE OXYGEN-EVOLVING JRNL TITL 2 PHOTOSYSTEM II COMPLEX IS A SEVEN-BLADED BETA-PROPELLER JRNL TITL 3 PROTEIN. JRNL REF PROC. NATL. ACAD. SCI. V. 115 E7824 2018 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 30061392 JRNL DOI 10.1073/PNAS.1800609115 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0104 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.84 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 50511 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 2542 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3509 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.89 REMARK 3 BIN R VALUE (WORKING SET) : 0.1850 REMARK 3 BIN FREE R VALUE SET COUNT : 174 REMARK 3 BIN FREE R VALUE : 0.2750 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2408 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 259 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.43500 REMARK 3 B22 (A**2) : 1.27300 REMARK 3 B33 (A**2) : 0.16200 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.084 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.079 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.054 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.186 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2536 ; 0.012 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3468 ; 2.226 ; 1.938 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 323 ; 6.980 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 120 ;33.054 ;23.667 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 398 ;13.182 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;22.068 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 366 ; 0.133 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2891 ; 0.013 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 402 ; 0.194 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1159 ; 0.183 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 191 ; 0.159 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 1 ; 0.177 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 51 ; 0.263 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 21 ; 0.268 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1556 ; 2.875 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 638 ; 1.082 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2514 ; 4.230 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 980 ; 5.773 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 948 ; 7.967 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 4256 ; 2.561 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2XBG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-APR-10. REMARK 100 THE DEPOSITION ID IS D_1290043587. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JAN-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50546 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 44.870 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.210 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 5.4400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.65 REMARK 200 R MERGE FOR SHELL (I) : 0.29000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.220 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXCD REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MAGNESIUM SULFATE, 10% W/V PEG REMARK 280 3350. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.27450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 74.27450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 27.86300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 37.83800 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 27.86300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 37.83800 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 74.27450 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 27.86300 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 37.83800 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 74.27450 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 27.86300 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 37.83800 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 21 REMARK 465 ARG A 22 REMARK 465 GLY A 23 REMARK 465 SER A 24 REMARK 465 HIS A 25 REMARK 465 HIS A 26 REMARK 465 HIS A 27 REMARK 465 HIS A 28 REMARK 465 HIS A 29 REMARK 465 HIS A 30 REMARK 465 GLY A 31 REMARK 465 LEU A 32 REMARK 465 VAL A 33 REMARK 465 PRO A 34 REMARK 465 ARG A 35 REMARK 465 GLY A 36 REMARK 465 SER A 37 REMARK 465 PRO A 346 REMARK 465 ALA A 347 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 268 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2003 O HOH A 2066 5545 1.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 43 CB - CG - OD1 ANGL. DEV. = 7.5 DEGREES REMARK 500 ARG A 91 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ASP A 126 CB - CG - OD1 ANGL. DEV. = 6.5 DEGREES REMARK 500 ASP A 235 CB - CG - OD1 ANGL. DEV. = 7.1 DEGREES REMARK 500 ASP A 251 CB - CG - OD2 ANGL. DEV. = 9.7 DEGREES REMARK 500 LEU A 335 CB - CG - CD1 ANGL. DEV. = -10.4 DEGREES REMARK 500 LEU A 335 CB - CG - CD2 ANGL. DEV. = 12.1 DEGREES REMARK 500 ARG A 337 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 337 NE - CZ - NH2 ANGL. DEV. = -5.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 140 118.22 -38.91 REMARK 500 ASP A 253 19.91 56.20 REMARK 500 ASN A 254 84.11 -150.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 253 ASN A 254 149.45 REMARK 500 REMARK 500 REMARK: NULL DBREF 2XBG A 39 347 UNP Q8DI95 YC48L_THEEB 39 347 SEQADV 2XBG MET A 21 UNP Q8DI95 EXPRESSION TAG SEQADV 2XBG ARG A 22 UNP Q8DI95 EXPRESSION TAG SEQADV 2XBG GLY A 23 UNP Q8DI95 EXPRESSION TAG SEQADV 2XBG SER A 24 UNP Q8DI95 EXPRESSION TAG SEQADV 2XBG HIS A 25 UNP Q8DI95 EXPRESSION TAG SEQADV 2XBG HIS A 26 UNP Q8DI95 EXPRESSION TAG SEQADV 2XBG HIS A 27 UNP Q8DI95 EXPRESSION TAG SEQADV 2XBG HIS A 28 UNP Q8DI95 EXPRESSION TAG SEQADV 2XBG HIS A 29 UNP Q8DI95 EXPRESSION TAG SEQADV 2XBG HIS A 30 UNP Q8DI95 EXPRESSION TAG SEQADV 2XBG GLY A 31 UNP Q8DI95 EXPRESSION TAG SEQADV 2XBG LEU A 32 UNP Q8DI95 EXPRESSION TAG SEQADV 2XBG VAL A 33 UNP Q8DI95 EXPRESSION TAG SEQADV 2XBG PRO A 34 UNP Q8DI95 EXPRESSION TAG SEQADV 2XBG ARG A 35 UNP Q8DI95 EXPRESSION TAG SEQADV 2XBG GLY A 36 UNP Q8DI95 EXPRESSION TAG SEQADV 2XBG SER A 37 UNP Q8DI95 EXPRESSION TAG SEQRES 1 A 327 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY LEU VAL SEQRES 2 A 327 PRO ARG GLY SER ALA ILE PRO ALA LEU ASP TYR ASN PRO SEQRES 3 A 327 TRP GLU ALA ILE GLN LEU PRO THR THR ALA THR ILE LEU SEQRES 4 A 327 ASP MET SER PHE ILE ASP ARG HIS HIS GLY TRP LEU VAL SEQRES 5 A 327 GLY VAL ASN ALA THR LEU MET GLU THR ARG ASP GLY GLY SEQRES 6 A 327 GLN THR TRP GLU PRO ARG THR LEU VAL LEU ASP HIS SER SEQRES 7 A 327 ASP TYR ARG PHE ASN SER VAL SER PHE GLN GLY ASN GLU SEQRES 8 A 327 GLY TRP ILE VAL GLY GLU PRO PRO ILE MET LEU HIS THR SEQRES 9 A 327 THR ASP GLY GLY GLN SER TRP SER GLN ILE PRO LEU ASP SEQRES 10 A 327 PRO LYS LEU PRO GLY SER PRO ARG LEU ILE LYS ALA LEU SEQRES 11 A 327 GLY ASN GLY SER ALA GLU MET ILE THR ASN VAL GLY ALA SEQRES 12 A 327 ILE TYR ARG THR LYS ASP SER GLY LYS ASN TRP GLN ALA SEQRES 13 A 327 LEU VAL GLN GLU ALA ILE GLY VAL MET ARG ASN LEU ASN SEQRES 14 A 327 ARG SER PRO SER GLY GLU TYR VAL ALA VAL SER SER ARG SEQRES 15 A 327 GLY SER PHE TYR SER THR TRP GLU PRO GLY GLN THR ALA SEQRES 16 A 327 TRP GLU PRO HIS ASN ARG THR THR SER ARG ARG LEU HIS SEQRES 17 A 327 ASN MET GLY PHE THR PRO ASP GLY ARG LEU TRP MET ILE SEQRES 18 A 327 VAL ASN GLY GLY LYS ILE ALA PHE SER ASP PRO ASP ASN SEQRES 19 A 327 SER GLU ASN TRP GLY GLU LEU LEU SER PRO LEU ARG ARG SEQRES 20 A 327 ASN SER VAL GLY PHE LEU ASP LEU ALA TYR ARG THR PRO SEQRES 21 A 327 ASN GLU VAL TRP LEU ALA GLY GLY ALA GLY ALA LEU LEU SEQRES 22 A 327 CYS SER GLN ASP GLY GLY GLN THR TRP GLN GLN ASP VAL SEQRES 23 A 327 ASP VAL LYS LYS VAL PRO SER ASN PHE TYR LYS ILE LEU SEQRES 24 A 327 PHE PHE SER PRO ASP GLN GLY PHE ILE LEU GLY GLN LYS SEQRES 25 A 327 GLY ILE LEU LEU ARG TYR VAL THR ASP LEU THR ALA ALA SEQRES 26 A 327 PRO ALA FORMUL 2 HOH *259(H2 O) HELIX 1 1 VAL A 306 LYS A 309 5 4 SHEET 1 AA 4 TRP A 47 GLN A 51 0 SHEET 2 AA 4 ILE A 334 TYR A 338 -1 O LEU A 335 N ILE A 50 SHEET 3 AA 4 GLN A 325 LEU A 329 -1 O GLY A 326 N TYR A 338 SHEET 4 AA 4 LYS A 317 SER A 322 -1 O LYS A 317 N LEU A 329 SHEET 1 AB 4 ILE A 58 PHE A 63 0 SHEET 2 AB 4 GLY A 69 GLY A 73 -1 O TRP A 70 N SER A 62 SHEET 3 AB 4 THR A 77 THR A 81 -1 O THR A 77 N GLY A 73 SHEET 4 AB 4 GLU A 89 PRO A 90 -1 O GLU A 89 N GLU A 80 SHEET 1 AC 4 ARG A 101 GLN A 108 0 SHEET 2 AC 4 GLU A 111 GLU A 117 -1 O GLU A 111 N GLN A 108 SHEET 3 AC 4 ILE A 120 THR A 124 -1 O ILE A 120 N GLY A 116 SHEET 4 AC 4 SER A 132 GLN A 133 -1 O SER A 132 N HIS A 123 SHEET 1 AD 4 PRO A 144 GLY A 151 0 SHEET 2 AD 4 SER A 154 THR A 159 -1 O SER A 154 N LEU A 150 SHEET 3 AD 4 ILE A 164 THR A 167 -1 O TYR A 165 N MET A 157 SHEET 4 AD 4 TRP A 174 VAL A 178 -1 O GLN A 175 N ARG A 166 SHEET 1 AE 4 MET A 185 ARG A 190 0 SHEET 2 AE 4 TYR A 196 SER A 200 -1 O VAL A 197 N ASN A 189 SHEET 3 AE 4 PHE A 205 TRP A 209 -1 O PHE A 205 N SER A 200 SHEET 4 AE 4 GLU A 217 ASN A 220 -1 O GLU A 217 N THR A 208 SHEET 1 AF 4 LEU A 227 PHE A 232 0 SHEET 2 AF 4 LEU A 238 VAL A 242 -1 O TRP A 239 N GLY A 231 SHEET 3 AF 4 LYS A 246 ASP A 251 -1 O LYS A 246 N VAL A 242 SHEET 4 AF 4 ASN A 254 TRP A 258 -1 N ASN A 254 O ASP A 251 SHEET 1 AG 4 PHE A 272 TYR A 277 0 SHEET 2 AG 4 VAL A 283 GLY A 287 -1 O TRP A 284 N ALA A 276 SHEET 3 AG 4 LEU A 292 SER A 295 -1 O LEU A 293 N LEU A 285 SHEET 4 AG 4 GLN A 303 GLN A 304 -1 O GLN A 303 N CYS A 294 CISPEP 1 GLU A 117 PRO A 118 0 -9.99 CRYST1 55.726 75.676 148.549 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017945 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013214 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006732 0.00000