data_2XBH # _entry.id 2XBH # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.280 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2XBH RCSB RCSB000503 WWPDB D_1000000503 # _pdbx_database_PDB_obs_spr.id OBSLTE _pdbx_database_PDB_obs_spr.date 1999-08-25 _pdbx_database_PDB_obs_spr.pdb_id 1C4B _pdbx_database_PDB_obs_spr.replace_pdb_id 2XBH _pdbx_database_PDB_obs_spr.details ? # _pdbx_database_status.status_code OBS _pdbx_database_status.entry_id 2XBH _pdbx_database_status.recvd_initial_deposition_date 1999-02-17:00:00 _pdbx_database_status.deposit_site BNL _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Mcdonnell, J.M.' 1 'Fushman, D.' 2 'Cahill, S.M.' 3 'Sutton, B.J.' 4 'Cowburn, D.' 5 # _citation.id primary _citation.title ;Solution Structures of FceRI Alpha-Chain Mimics: A Beta-Hairpin Peptide and Its Retroenantiomer ; _citation.journal_abbrev J.Am.Chem.Soc. _citation.journal_volume 119 _citation.page_first 5321 _citation.page_last 5328 _citation.year 1997 _citation.journal_id_ASTM JACSAT _citation.country US _citation.journal_id_ISSN 0002-7863 _citation.journal_id_CSD 0004 _citation.book_publisher ? _citation.pdbx_database_id_DOI 10.1021/ja963884o _citation.pdbx_database_id_PubMed ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'McDonnell, J.M.' 1 primary 'Fushman, D.' 2 primary 'Cahill, S.M.' 3 primary 'Sutton, B.J.' 4 primary 'Cowburn, D.' 5 # _cell.entry_id 2XBH _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2XBH _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description 'PROTEIN (CYCLO(RD-262))' _entity.formula_weight 1568.814 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details 'DISULFIDE BETWEEN CYS1 AND CYS13' # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DCY n 1 2 DTY n 1 3 DLY n 1 4 DLE n 1 5 DAL n 1 6 DGL n 1 7 GLY n 1 8 DAS n 1 9 DLY n 1 10 DTY n 1 11 DTY n 1 12 DIL n 1 13 CYS n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details ; DERIVED FROM C-C' LOOP OF HUMAN FCERI-ALPHA ; # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DAL 'D-peptide linking' . D-ALANINE ? 'C3 H7 N O2' 89.093 DAS 'D-peptide linking' . 'D-ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 DCY 'D-peptide linking' . D-CYSTEINE ? 'C3 H7 N O2 S' 121.158 DGL 'D-peptide linking' . 'D-GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 DIL 'D-peptide linking' . D-ISOLEUCINE ? 'C6 H13 N O2' 131.173 DLE 'D-peptide linking' . D-LEUCINE ? 'C6 H13 N O2' 131.173 DLY 'D-peptide linking' . D-LYSINE ? 'C6 H14 N2 O2' 146.188 DTY 'D-peptide linking' . D-TYROSINE ? 'C9 H11 N O3' 181.189 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 NOESY 1 2 1 ROESY 1 3 1 TOCSY 1 4 1 DQF-COSY 1 5 1 HMQC 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298.00 _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 5.50 _pdbx_nmr_exptl_sample_conditions.ionic_strength 0 _pdbx_nmr_exptl_sample_conditions.pressure_units atm # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model DMX500 _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 500 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.entry_id 2XBH _pdbx_nmr_refine.method 'distance geometry' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 2XBH _pdbx_nmr_ensemble.conformers_calculated_total_number 1000 _pdbx_nmr_ensemble.conformers_submitted_total_number 15 _pdbx_nmr_ensemble.conformer_selection_criteria 'LEAST RESTRAINT VIOLATION' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal refinement DYANA ? GUNTERT,WUTHRICH 1 'structure calculation' DIANA ? ? 2 # _exptl.entry_id 2XBH _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2XBH _struct.title 'A BETA-HAIRPIN MIMIC FROM FCERI-ALPHA-CYCLO(RD-262)' _struct.pdbx_descriptor 'CYCLO(RD-262)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2XBH _struct_keywords.pdbx_keywords BETA-HAIRPIN _struct_keywords.text 'BETA-HAIRPIN, PEPTIDE MIMIC, D-AMINO ACIDS, ALLERGY, FCERI, IGE' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _database_PDB_matrix.entry_id 2XBH _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2XBH _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DCY 1 1 1 DCY DCY ? . n A 1 2 DTY 2 2 2 DTY DTY ? . n A 1 3 DLY 3 3 3 DLY DLY ? . n A 1 4 DLE 4 4 4 DLE DLE ? . n A 1 5 DAL 5 5 5 DAL DAL ? . n A 1 6 DGL 6 6 6 DGL DGL ? . n A 1 7 GLY 7 7 7 GLY GLY ? . n A 1 8 DAS 8 8 8 DAS DAS ? . n A 1 9 DLY 9 9 9 DLY DLY ? . n A 1 10 DTY 10 10 10 DTY DTY ? . n A 1 11 DTY 11 11 11 DTY DTY ? . n A 1 12 DIL 12 12 12 DIL DIL ? . n A 1 13 CYS 13 13 13 CYS CYS ? . n # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1999-02-22 2 'Structure model' 1 1 1999-08-25 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description 1 1 'Structure model' repository 'Initial release' ? 2 2 'Structure model' repository Obsolete ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 H . DAL 5 ? ? O . DAS 8 ? ? 1.58 2 1 SG . DCY 1 ? ? SG . CYS 13 ? ? 1.73 3 2 SG . DCY 1 ? ? SG . CYS 13 ? ? 2.12 4 3 H . DAL 5 ? ? O . DAS 8 ? ? 1.55 5 3 2HZ . DLY 3 ? ? OD1 . DAS 8 ? ? 1.57 6 3 SG . DCY 1 ? ? SG . CYS 13 ? ? 1.69 7 4 SG . DCY 1 ? ? SG . CYS 13 ? ? 2.10 8 5 H . DAL 5 ? ? O . DAS 8 ? ? 1.55 9 5 SG . DCY 1 ? ? SG . CYS 13 ? ? 1.79 10 6 SG . DCY 1 ? ? SG . CYS 13 ? ? 1.49 11 7 SG . DCY 1 ? ? SG . CYS 13 ? ? 1.97 12 8 SG . DCY 1 ? ? SG . CYS 13 ? ? 1.66 13 10 O . DCY 1 ? ? H . CYS 13 ? ? 1.13 14 10 3HZ . DLY 3 ? ? OH . DTY 10 ? ? 1.41 15 10 H . DAL 5 ? ? O . DAS 8 ? ? 1.56 16 10 SG . DCY 1 ? ? SG . CYS 13 ? ? 1.78 17 10 O . DCY 1 ? ? N . CYS 13 ? ? 2.11 18 11 H . DAL 5 ? ? O . DAS 8 ? ? 1.50 19 11 SG . DCY 1 ? ? SG . CYS 13 ? ? 1.68 20 11 O . DCY 1 ? ? N . DIL 12 ? ? 2.01 21 12 O . DCY 1 ? ? H . CYS 13 ? ? 1.56 22 12 SG . DCY 1 ? ? SG . CYS 13 ? ? 1.59 23 13 H . DAL 5 ? ? O . DAS 8 ? ? 1.57 24 13 SG . DCY 1 ? ? SG . CYS 13 ? ? 1.63 25 14 H . DAL 5 ? ? O . DAS 8 ? ? 1.60 26 14 SG . DCY 1 ? ? SG . CYS 13 ? ? 1.66 27 15 SG . DCY 1 ? ? SG . CYS 13 ? ? 1.68 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 DAL . 5 ? ? 148.20 146.39 2 1 DGL . 6 ? ? 47.87 80.40 3 1 DIL . 12 ? ? 140.74 112.05 4 2 DAL . 5 ? ? 141.88 145.50 5 2 DGL . 6 ? ? 47.33 82.95 6 2 DIL . 12 ? ? 145.68 111.48 7 3 DLY . 3 ? ? 178.23 -134.67 8 3 DAL . 5 ? ? 149.13 147.15 9 3 DGL . 6 ? ? 47.80 79.37 10 4 DTY . 2 ? ? -127.07 161.17 11 4 DAL . 5 ? ? 159.64 141.84 12 4 DGL . 6 ? ? 50.12 74.78 13 4 DLY . 9 ? ? 143.86 -44.99 14 4 DIL . 12 ? ? 145.84 112.47 15 5 DAL . 5 ? ? 136.42 149.65 16 5 DGL . 6 ? ? 46.09 89.51 17 5 DTY . 11 ? ? 100.59 -68.78 18 6 DAL . 5 ? ? 136.59 148.36 19 6 DGL . 6 ? ? 45.90 89.27 20 7 DTY . 2 ? ? -178.46 -87.06 21 7 DAL . 5 ? ? 153.90 143.97 22 7 DGL . 6 ? ? 49.47 82.33 23 7 DTY . 10 ? ? 176.85 -134.74 24 7 DIL . 12 ? ? -87.91 173.80 25 8 DLE . 4 ? ? 173.26 -30.07 26 8 DAL . 5 ? ? 115.81 148.92 27 8 DGL . 6 ? ? 42.42 89.36 28 8 DIL . 12 ? ? 160.39 162.00 29 9 DTY . 2 ? ? -55.25 168.61 30 9 DLY . 3 ? ? 177.31 170.58 31 9 DAL . 5 ? ? 136.82 146.16 32 9 DGL . 6 ? ? 46.31 87.79 33 9 DLY . 9 ? ? 141.48 -59.28 34 9 DTY . 10 ? ? 177.60 -133.18 35 9 DIL . 12 ? ? -162.79 68.78 36 10 DTY . 2 ? ? 164.46 -105.18 37 10 DAL . 5 ? ? 166.51 152.07 38 10 DGL . 6 ? ? 45.11 88.01 39 10 DTY . 10 ? ? 176.67 -135.96 40 11 DTY . 2 ? ? 171.05 -67.73 41 11 DAL . 5 ? ? 153.05 147.86 42 11 DAS . 8 ? ? 165.15 -119.50 43 11 DLY . 9 ? ? 143.51 -41.18 44 11 DIL . 12 ? ? 136.08 109.75 45 12 DAL . 5 ? ? 146.04 144.64 46 12 DGL . 6 ? ? 47.04 81.81 47 12 DTY . 10 ? ? 161.12 -102.66 48 13 DAL . 5 ? ? 149.34 146.42 49 13 DGL . 6 ? ? 48.72 77.60 50 13 DAS . 8 ? ? 162.54 -117.78 51 13 DTY . 11 ? ? 119.38 -53.17 52 13 DIL . 12 ? ? 82.67 98.48 53 14 DAL . 5 ? ? 157.26 146.38 54 14 DGL . 6 ? ? 47.13 87.89 55 14 DLY . 9 ? ? 143.07 -54.97 56 14 DIL . 12 ? ? -93.92 -176.51 57 15 DAL . 5 ? ? 176.55 161.38 58 15 DGL . 6 ? ? 44.06 88.19 59 15 DIL . 12 ? ? 105.98 105.60 #