data_2XC2 # _entry.id 2XC2 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2XC2 PDBE EBI-43325 WWPDB D_1290043325 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 2XBI unspecified 'CRYSTAL STRUCTURE OF SCHISTOSOMA MANSONI THIOREDOXIN AT 1.6 ANGSTROM' PDB 2XBQ unspecified 'CRYSTAL STRUCTURE OF REDUCED SCHISTOSOMA MANSONI THIOREDOXIN PRE-PROTEIN AT 1.7 ANGSTROM' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2XC2 _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2010-04-15 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Boumis, G.' 1 'Miele, A.E.' 2 'Dimastrogiovanni, D.' 3 'Angelucci, F.' 4 'Bellelli, A.' 5 # _citation.id primary _citation.title 'Structural and Functional Characterization of Schistosoma Mansoni Thioredoxin.' _citation.journal_abbrev 'Protein Sci.' _citation.journal_volume 20 _citation.page_first 1069 _citation.page_last ? _citation.year 2011 _citation.journal_id_ASTM PRCIEI _citation.country US _citation.journal_id_ISSN 0961-8368 _citation.journal_id_CSD 0795 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21465612 _citation.pdbx_database_id_DOI 10.1002/PRO.634 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Boumis, G.' 1 primary 'Angelucci, F.' 2 primary 'Bellelli, A.' 3 primary 'Brunori, M.' 4 primary 'Dimastrogiovanni, D.' 5 primary 'Miele, A.E.' 6 # _cell.entry_id 2XC2 _cell.length_a 33.931 _cell.length_b 51.998 _cell.length_c 59.313 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2XC2 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man THIOREDOXINN 13100.223 1 1.8.1.8 YES ? ? 2 non-polymer syn 'CALCIUM ION' 40.078 1 ? ? ? ? 3 non-polymer syn 'ZINC ION' 65.409 1 ? ? ? ? 4 water nat water 18.015 107 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSPEFTSQLVIMSELIELKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKYDAIFVKVDVDKLEETARK YNISAMPTFIAIKNGEKVGDVVGASIAKVEDMIKKFI ; _entity_poly.pdbx_seq_one_letter_code_can ;GSPEFTSQLVIMSELIELKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKYDAIFVKVDVDKLEETARK YNISAMPTFIAIKNGEKVGDVVGASIAKVEDMIKKFI ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 PRO n 1 4 GLU n 1 5 PHE n 1 6 THR n 1 7 SER n 1 8 GLN n 1 9 LEU n 1 10 VAL n 1 11 ILE n 1 12 MET n 1 13 SER n 1 14 GLU n 1 15 LEU n 1 16 ILE n 1 17 GLU n 1 18 LEU n 1 19 LYS n 1 20 GLN n 1 21 ASP n 1 22 GLY n 1 23 ASP n 1 24 LEU n 1 25 GLU n 1 26 SER n 1 27 LEU n 1 28 LEU n 1 29 GLU n 1 30 GLN n 1 31 HIS n 1 32 LYS n 1 33 ASN n 1 34 LYS n 1 35 LEU n 1 36 VAL n 1 37 VAL n 1 38 VAL n 1 39 ASP n 1 40 PHE n 1 41 PHE n 1 42 ALA n 1 43 THR n 1 44 TRP n 1 45 CYS n 1 46 GLY n 1 47 PRO n 1 48 CYS n 1 49 LYS n 1 50 THR n 1 51 ILE n 1 52 ALA n 1 53 PRO n 1 54 LEU n 1 55 PHE n 1 56 LYS n 1 57 GLU n 1 58 LEU n 1 59 SER n 1 60 GLU n 1 61 LYS n 1 62 TYR n 1 63 ASP n 1 64 ALA n 1 65 ILE n 1 66 PHE n 1 67 VAL n 1 68 LYS n 1 69 VAL n 1 70 ASP n 1 71 VAL n 1 72 ASP n 1 73 LYS n 1 74 LEU n 1 75 GLU n 1 76 GLU n 1 77 THR n 1 78 ALA n 1 79 ARG n 1 80 LYS n 1 81 TYR n 1 82 ASN n 1 83 ILE n 1 84 SER n 1 85 ALA n 1 86 MET n 1 87 PRO n 1 88 THR n 1 89 PHE n 1 90 ILE n 1 91 ALA n 1 92 ILE n 1 93 LYS n 1 94 ASN n 1 95 GLY n 1 96 GLU n 1 97 LYS n 1 98 VAL n 1 99 GLY n 1 100 ASP n 1 101 VAL n 1 102 VAL n 1 103 GLY n 1 104 ALA n 1 105 SER n 1 106 ILE n 1 107 ALA n 1 108 LYS n 1 109 VAL n 1 110 GLU n 1 111 ASP n 1 112 MET n 1 113 ILE n 1 114 LYS n 1 115 LYS n 1 116 PHE n 1 117 ILE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'BLOOD FLUKE' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'SCHISTOSOMA MANSONI' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 6183 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PGEX-4T1 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'CDNA FROM ADULT SCHISTOSOMA MANSONI' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 PDB 2XC2 1 ? ? 2XC2 ? 2 UNP Q8T9N5_SCHMA 1 ? ? Q8T9N5 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2XC2 A 8 ? 11 ? 2XC2 -3 ? 0 ? -3 0 2 2 2XC2 A 12 ? 117 ? Q8T9N5 1 ? 106 ? 1 106 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2XC2 GLY A 1 ? UNP Q8T9N5 ? ? 'expression tag' -10 1 1 2XC2 SER A 2 ? UNP Q8T9N5 ? ? 'expression tag' -9 2 1 2XC2 PRO A 3 ? UNP Q8T9N5 ? ? 'expression tag' -8 3 1 2XC2 GLU A 4 ? UNP Q8T9N5 ? ? 'expression tag' -7 4 1 2XC2 PHE A 5 ? UNP Q8T9N5 ? ? 'expression tag' -6 5 1 2XC2 THR A 6 ? UNP Q8T9N5 ? ? 'expression tag' -5 6 1 2XC2 SER A 7 ? UNP Q8T9N5 ? ? 'expression tag' -4 7 1 2XC2 GLU A 14 ? UNP Q8T9N5 LYS 3 'engineered mutation' 3 8 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.entry_id 2XC2 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.18 _exptl_crystal.density_percent_sol 41.86 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '0.1M SODIUM CACODYLATE PH 6.5, 10MM ZINC ACETATE, 24% (W/V) PEG 8000' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2006-04-06 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.932 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ELETTRA BEAMLINE 5.2R' _diffrn_source.pdbx_synchrotron_site ELETTRA _diffrn_source.pdbx_synchrotron_beamline 5.2R _diffrn_source.pdbx_wavelength 0.932 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2XC2 _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 39.10 _reflns.d_resolution_high 1.56 _reflns.number_obs 15044 _reflns.number_all ? _reflns.percent_possible_obs 100.0 _reflns.pdbx_Rmerge_I_obs 0.06 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 26.90 _reflns.B_iso_Wilson_estimate 18.6 _reflns.pdbx_redundancy 10.1 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.56 _reflns_shell.d_res_low 1.61 _reflns_shell.percent_possible_all 96.5 _reflns_shell.Rmerge_I_obs 0.18 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 5.10 _reflns_shell.pdbx_redundancy 9.2 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2XC2 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 14281 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 39.10 _refine.ls_d_res_high 1.56 _refine.ls_percent_reflns_obs 96.52 _refine.ls_R_factor_obs 0.20653 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.20460 _refine.ls_R_factor_R_free 0.24491 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 763 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.954 _refine.correlation_coeff_Fo_to_Fc_free 0.938 _refine.B_iso_mean 18.614 _refine.aniso_B[1][1] -0.31 _refine.aniso_B[2][2] 1.00 _refine.aniso_B[3][3] -0.69 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.' _refine.pdbx_starting_model 'PDB ENTRY 1XWA' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.102 _refine.pdbx_overall_ESU_R_Free 0.104 _refine.overall_SU_ML 0.143 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 3.830 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 869 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 2 _refine_hist.number_atoms_solvent 107 _refine_hist.number_atoms_total 978 _refine_hist.d_res_high 1.56 _refine_hist.d_res_low 39.10 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.015 0.022 ? 905 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.459 1.993 ? 1223 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.601 5.000 ? 115 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 34.216 26.571 ? 35 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 12.868 15.000 ? 186 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 21.435 15.000 ? 1 'X-RAY DIFFRACTION' ? r_chiral_restr 0.105 0.200 ? 144 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.007 0.021 ? 647 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.966 1.500 ? 560 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.692 2.000 ? 915 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 2.545 3.000 ? 345 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 3.894 4.500 ? 306 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.557 _refine_ls_shell.d_res_low 1.598 _refine_ls_shell.number_reflns_R_work 973 _refine_ls_shell.R_factor_R_work 0.286 _refine_ls_shell.percent_reflns_obs 92.29 _refine_ls_shell.R_factor_R_free 0.322 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 56 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 2XC2 _struct.title 'Crystal structure of oxidized Schistosoma mansoni Thioredoxin pre- protein at 1.6 Angstrom' _struct.pdbx_descriptor 'THIOREDOXINN (E.C.1.8.1.8)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2XC2 _struct_keywords.pdbx_keywords OXIDOREDUCTASE _struct_keywords.text 'OXIDOREDUCTASE, PROTEIN DISULFIDE REDUCTASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 22 ? HIS A 31 ? GLY A 11 HIS A 20 1 ? 10 HELX_P HELX_P2 2 CYS A 45 ? GLU A 60 ? CYS A 34 GLU A 49 1 ? 16 HELX_P HELX_P3 3 LEU A 74 ? TYR A 81 ? LEU A 63 TYR A 70 1 ? 8 HELX_P HELX_P4 4 SER A 105 ? ILE A 117 ? SER A 94 ILE A 106 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 45 SG ? ? ? 1_555 A CYS 48 SG ? ? A CYS 34 A CYS 37 1_555 ? ? ? ? ? ? ? 2.220 ? metalc1 metalc ? ? B CA . CA ? ? ? 1_555 A GLU 57 OE1 ? ? A CA 1107 A GLU 46 1_555 ? ? ? ? ? ? ? 2.726 ? metalc2 metalc ? ? B CA . CA ? ? ? 1_555 A GLU 57 OE2 ? ? A CA 1107 A GLU 46 1_555 ? ? ? ? ? ? ? 2.139 ? metalc3 metalc ? ? B CA . CA ? ? ? 1_555 A GLU 76 OE1 ? ? A CA 1107 A GLU 65 2_554 ? ? ? ? ? ? ? 2.418 ? metalc4 metalc ? ? B CA . CA ? ? ? 1_555 A GLU 60 OE1 ? ? A CA 1107 A GLU 49 1_555 ? ? ? ? ? ? ? 2.057 ? metalc5 metalc ? ? B CA . CA ? ? ? 1_555 A GLU 60 OE2 ? ? A CA 1107 A GLU 49 1_555 ? ? ? ? ? ? ? 2.888 ? metalc6 metalc ? ? C ZN . ZN ? ? ? 1_555 A HIS 31 NE2 ? ? A ZN 1108 A HIS 20 1_555 ? ? ? ? ? ? ? 2.096 ? metalc7 metalc ? ? C ZN . ZN ? ? ? 1_555 A GLU 14 OE1 ? ? A ZN 1108 A GLU 3 1_555 ? ? ? ? ? ? ? 2.534 ? metalc8 metalc ? ? C ZN . ZN ? ? ? 1_555 D HOH . O ? ? A ZN 1108 A HOH 2106 1_555 ? ? ? ? ? ? ? 2.339 ? metalc9 metalc ? ? C ZN . ZN ? ? ? 1_555 A GLU 14 OE2 ? ? A ZN 1108 A GLU 3 1_555 ? ? ? ? ? ? ? 2.037 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? metalc ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 MET 86 A . ? MET 75 A PRO 87 A ? PRO 76 A 1 3.65 2 MET 86 A . ? MET 75 A PRO 87 A ? PRO 76 A 1 -9.20 # _struct_sheet.id AA _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? parallel AA 2 3 ? parallel AA 3 4 ? anti-parallel AA 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 GLU A 14 ? GLU A 17 ? GLU A 3 GLU A 6 AA 2 ILE A 65 ? ASP A 70 ? ILE A 54 ASP A 59 AA 3 VAL A 36 ? PHE A 41 ? VAL A 25 PHE A 30 AA 4 THR A 88 ? LYS A 93 ? THR A 77 LYS A 82 AA 5 GLU A 96 ? VAL A 102 ? GLU A 85 VAL A 91 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N ILE A 16 ? N ILE A 5 O PHE A 66 ? O PHE A 55 AA 2 3 N VAL A 67 ? N VAL A 56 O VAL A 37 ? O VAL A 26 AA 3 4 N PHE A 40 ? N PHE A 29 O THR A 88 ? O THR A 77 AA 4 5 N LYS A 93 ? N LYS A 82 O GLU A 96 ? O GLU A 85 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE CA A 1107' AC2 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE ZN A 1108' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 GLU A 57 ? GLU A 46 . ? 1_555 ? 2 AC1 3 GLU A 60 ? GLU A 49 . ? 1_555 ? 3 AC1 3 GLU A 76 ? GLU A 65 . ? 2_554 ? 4 AC2 5 GLU A 14 ? GLU A 3 . ? 1_555 ? 5 AC2 5 HIS A 31 ? HIS A 20 . ? 1_555 ? 6 AC2 5 HOH D . ? HOH A 2033 . ? 1_555 ? 7 AC2 5 HOH D . ? HOH A 2106 . ? 1_555 ? 8 AC2 5 HOH D . ? HOH A 2107 . ? 1_555 ? # _database_PDB_matrix.entry_id 2XC2 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2XC2 _atom_sites.fract_transf_matrix[1][1] 0.029472 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019232 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.016860 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CA N O S ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -10 ? ? ? A . n A 1 2 SER 2 -9 ? ? ? A . n A 1 3 PRO 3 -8 ? ? ? A . n A 1 4 GLU 4 -7 ? ? ? A . n A 1 5 PHE 5 -6 ? ? ? A . n A 1 6 THR 6 -5 ? ? ? A . n A 1 7 SER 7 -4 ? ? ? A . n A 1 8 GLN 8 -3 -3 GLN GLN A . n A 1 9 LEU 9 -2 -2 LEU LEU A . n A 1 10 VAL 10 -1 -1 VAL VAL A . n A 1 11 ILE 11 0 0 ILE ILE A . n A 1 12 MET 12 1 1 MET MET A . n A 1 13 SER 13 2 2 SER SER A . n A 1 14 GLU 14 3 3 GLU GLU A . n A 1 15 LEU 15 4 4 LEU LEU A . n A 1 16 ILE 16 5 5 ILE ILE A . n A 1 17 GLU 17 6 6 GLU GLU A . n A 1 18 LEU 18 7 7 LEU LEU A . n A 1 19 LYS 19 8 8 LYS LYS A . n A 1 20 GLN 20 9 9 GLN GLN A . n A 1 21 ASP 21 10 10 ASP ASP A . n A 1 22 GLY 22 11 11 GLY GLY A . n A 1 23 ASP 23 12 12 ASP ASP A . n A 1 24 LEU 24 13 13 LEU LEU A . n A 1 25 GLU 25 14 14 GLU GLU A . n A 1 26 SER 26 15 15 SER SER A . n A 1 27 LEU 27 16 16 LEU LEU A . n A 1 28 LEU 28 17 17 LEU LEU A . n A 1 29 GLU 29 18 18 GLU GLU A . n A 1 30 GLN 30 19 19 GLN GLN A . n A 1 31 HIS 31 20 20 HIS HIS A . n A 1 32 LYS 32 21 21 LYS LYS A . n A 1 33 ASN 33 22 22 ASN ASN A . n A 1 34 LYS 34 23 23 LYS LYS A . n A 1 35 LEU 35 24 24 LEU LEU A . n A 1 36 VAL 36 25 25 VAL VAL A . n A 1 37 VAL 37 26 26 VAL VAL A . n A 1 38 VAL 38 27 27 VAL VAL A . n A 1 39 ASP 39 28 28 ASP ASP A . n A 1 40 PHE 40 29 29 PHE PHE A . n A 1 41 PHE 41 30 30 PHE PHE A . n A 1 42 ALA 42 31 31 ALA ALA A . n A 1 43 THR 43 32 32 THR THR A . n A 1 44 TRP 44 33 33 TRP TRP A . n A 1 45 CYS 45 34 34 CYS CYS A . n A 1 46 GLY 46 35 35 GLY GLY A . n A 1 47 PRO 47 36 36 PRO PRO A . n A 1 48 CYS 48 37 37 CYS CYS A . n A 1 49 LYS 49 38 38 LYS LYS A . n A 1 50 THR 50 39 39 THR THR A . n A 1 51 ILE 51 40 40 ILE ILE A . n A 1 52 ALA 52 41 41 ALA ALA A . n A 1 53 PRO 53 42 42 PRO PRO A . n A 1 54 LEU 54 43 43 LEU LEU A . n A 1 55 PHE 55 44 44 PHE PHE A . n A 1 56 LYS 56 45 45 LYS LYS A . n A 1 57 GLU 57 46 46 GLU GLU A . n A 1 58 LEU 58 47 47 LEU LEU A . n A 1 59 SER 59 48 48 SER SER A . n A 1 60 GLU 60 49 49 GLU GLU A . n A 1 61 LYS 61 50 50 LYS LYS A . n A 1 62 TYR 62 51 51 TYR TYR A . n A 1 63 ASP 63 52 52 ASP ASP A . n A 1 64 ALA 64 53 53 ALA ALA A . n A 1 65 ILE 65 54 54 ILE ILE A . n A 1 66 PHE 66 55 55 PHE PHE A . n A 1 67 VAL 67 56 56 VAL VAL A . n A 1 68 LYS 68 57 57 LYS LYS A . n A 1 69 VAL 69 58 58 VAL VAL A . n A 1 70 ASP 70 59 59 ASP ASP A . n A 1 71 VAL 71 60 60 VAL VAL A . n A 1 72 ASP 72 61 61 ASP ASP A . n A 1 73 LYS 73 62 62 LYS LYS A . n A 1 74 LEU 74 63 63 LEU LEU A . n A 1 75 GLU 75 64 64 GLU GLU A . n A 1 76 GLU 76 65 65 GLU GLU A . n A 1 77 THR 77 66 66 THR THR A . n A 1 78 ALA 78 67 67 ALA ALA A . n A 1 79 ARG 79 68 68 ARG ARG A . n A 1 80 LYS 80 69 69 LYS LYS A . n A 1 81 TYR 81 70 70 TYR TYR A . n A 1 82 ASN 82 71 71 ASN ASN A . n A 1 83 ILE 83 72 72 ILE ILE A . n A 1 84 SER 84 73 73 SER SER A . n A 1 85 ALA 85 74 74 ALA ALA A . n A 1 86 MET 86 75 75 MET MET A . n A 1 87 PRO 87 76 76 PRO PRO A . n A 1 88 THR 88 77 77 THR THR A . n A 1 89 PHE 89 78 78 PHE PHE A . n A 1 90 ILE 90 79 79 ILE ILE A . n A 1 91 ALA 91 80 80 ALA ALA A . n A 1 92 ILE 92 81 81 ILE ILE A . n A 1 93 LYS 93 82 82 LYS LYS A . n A 1 94 ASN 94 83 83 ASN ASN A . n A 1 95 GLY 95 84 84 GLY GLY A . n A 1 96 GLU 96 85 85 GLU GLU A . n A 1 97 LYS 97 86 86 LYS LYS A . n A 1 98 VAL 98 87 87 VAL VAL A . n A 1 99 GLY 99 88 88 GLY GLY A . n A 1 100 ASP 100 89 89 ASP ASP A . n A 1 101 VAL 101 90 90 VAL VAL A . n A 1 102 VAL 102 91 91 VAL VAL A . n A 1 103 GLY 103 92 92 GLY GLY A . n A 1 104 ALA 104 93 93 ALA ALA A . n A 1 105 SER 105 94 94 SER SER A . n A 1 106 ILE 106 95 95 ILE ILE A . n A 1 107 ALA 107 96 96 ALA ALA A . n A 1 108 LYS 108 97 97 LYS LYS A . n A 1 109 VAL 109 98 98 VAL VAL A . n A 1 110 GLU 110 99 99 GLU GLU A . n A 1 111 ASP 111 100 100 ASP ASP A . n A 1 112 MET 112 101 101 MET MET A . n A 1 113 ILE 113 102 102 ILE ILE A . n A 1 114 LYS 114 103 103 LYS LYS A . n A 1 115 LYS 115 104 104 LYS LYS A . n A 1 116 PHE 116 105 105 PHE PHE A . n A 1 117 ILE 117 106 106 ILE ILE A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA 1 1107 1107 CA CA A . C 3 ZN 1 1108 1108 ZN ZN A . D 4 HOH 1 2001 2001 HOH HOH A . D 4 HOH 2 2002 2002 HOH HOH A . D 4 HOH 3 2003 2003 HOH HOH A . D 4 HOH 4 2004 2004 HOH HOH A . D 4 HOH 5 2005 2005 HOH HOH A . D 4 HOH 6 2006 2006 HOH HOH A . D 4 HOH 7 2007 2007 HOH HOH A . D 4 HOH 8 2008 2008 HOH HOH A . D 4 HOH 9 2009 2009 HOH HOH A . D 4 HOH 10 2010 2010 HOH HOH A . D 4 HOH 11 2011 2011 HOH HOH A . D 4 HOH 12 2012 2012 HOH HOH A . D 4 HOH 13 2013 2013 HOH HOH A . D 4 HOH 14 2014 2014 HOH HOH A . D 4 HOH 15 2015 2015 HOH HOH A . D 4 HOH 16 2016 2016 HOH HOH A . D 4 HOH 17 2017 2017 HOH HOH A . D 4 HOH 18 2018 2018 HOH HOH A . D 4 HOH 19 2019 2019 HOH HOH A . D 4 HOH 20 2020 2020 HOH HOH A . D 4 HOH 21 2021 2021 HOH HOH A . D 4 HOH 22 2022 2022 HOH HOH A . D 4 HOH 23 2023 2023 HOH HOH A . D 4 HOH 24 2024 2024 HOH HOH A . D 4 HOH 25 2025 2025 HOH HOH A . D 4 HOH 26 2026 2026 HOH HOH A . D 4 HOH 27 2027 2027 HOH HOH A . D 4 HOH 28 2028 2028 HOH HOH A . D 4 HOH 29 2029 2029 HOH HOH A . D 4 HOH 30 2030 2030 HOH HOH A . D 4 HOH 31 2031 2031 HOH HOH A . D 4 HOH 32 2032 2032 HOH HOH A . D 4 HOH 33 2033 2033 HOH HOH A . D 4 HOH 34 2034 2034 HOH HOH A . D 4 HOH 35 2035 2035 HOH HOH A . D 4 HOH 36 2036 2036 HOH HOH A . D 4 HOH 37 2037 2037 HOH HOH A . D 4 HOH 38 2038 2038 HOH HOH A . D 4 HOH 39 2039 2039 HOH HOH A . D 4 HOH 40 2040 2040 HOH HOH A . D 4 HOH 41 2041 2041 HOH HOH A . D 4 HOH 42 2042 2042 HOH HOH A . D 4 HOH 43 2043 2043 HOH HOH A . D 4 HOH 44 2044 2044 HOH HOH A . D 4 HOH 45 2045 2045 HOH HOH A . D 4 HOH 46 2046 2046 HOH HOH A . D 4 HOH 47 2047 2047 HOH HOH A . D 4 HOH 48 2048 2048 HOH HOH A . D 4 HOH 49 2049 2049 HOH HOH A . D 4 HOH 50 2050 2050 HOH HOH A . D 4 HOH 51 2051 2051 HOH HOH A . D 4 HOH 52 2052 2052 HOH HOH A . D 4 HOH 53 2053 2053 HOH HOH A . D 4 HOH 54 2054 2054 HOH HOH A . D 4 HOH 55 2055 2055 HOH HOH A . D 4 HOH 56 2056 2056 HOH HOH A . D 4 HOH 57 2057 2057 HOH HOH A . D 4 HOH 58 2058 2058 HOH HOH A . D 4 HOH 59 2059 2059 HOH HOH A . D 4 HOH 60 2060 2060 HOH HOH A . D 4 HOH 61 2061 2061 HOH HOH A . D 4 HOH 62 2062 2062 HOH HOH A . D 4 HOH 63 2063 2063 HOH HOH A . D 4 HOH 64 2064 2064 HOH HOH A . D 4 HOH 65 2065 2065 HOH HOH A . D 4 HOH 66 2066 2066 HOH HOH A . D 4 HOH 67 2067 2067 HOH HOH A . D 4 HOH 68 2068 2068 HOH HOH A . D 4 HOH 69 2069 2069 HOH HOH A . D 4 HOH 70 2070 2070 HOH HOH A . D 4 HOH 71 2071 2071 HOH HOH A . D 4 HOH 72 2072 2072 HOH HOH A . D 4 HOH 73 2073 2073 HOH HOH A . D 4 HOH 74 2074 2074 HOH HOH A . D 4 HOH 75 2075 2075 HOH HOH A . D 4 HOH 76 2076 2076 HOH HOH A . D 4 HOH 77 2077 2077 HOH HOH A . D 4 HOH 78 2078 2078 HOH HOH A . D 4 HOH 79 2079 2079 HOH HOH A . D 4 HOH 80 2080 2080 HOH HOH A . D 4 HOH 81 2081 2081 HOH HOH A . D 4 HOH 82 2082 2082 HOH HOH A . D 4 HOH 83 2083 2083 HOH HOH A . D 4 HOH 84 2084 2084 HOH HOH A . D 4 HOH 85 2085 2085 HOH HOH A . D 4 HOH 86 2086 2086 HOH HOH A . D 4 HOH 87 2087 2087 HOH HOH A . D 4 HOH 88 2088 2088 HOH HOH A . D 4 HOH 89 2089 2089 HOH HOH A . D 4 HOH 90 2090 2090 HOH HOH A . D 4 HOH 91 2091 2091 HOH HOH A . D 4 HOH 92 2092 2092 HOH HOH A . D 4 HOH 93 2093 2093 HOH HOH A . D 4 HOH 94 2094 2094 HOH HOH A . D 4 HOH 95 2095 2095 HOH HOH A . D 4 HOH 96 2096 2096 HOH HOH A . D 4 HOH 97 2097 2097 HOH HOH A . D 4 HOH 98 2098 2098 HOH HOH A . D 4 HOH 99 2099 2099 HOH HOH A . D 4 HOH 100 2100 2100 HOH HOH A . D 4 HOH 101 2101 2101 HOH HOH A . D 4 HOH 102 2102 2102 HOH HOH A . D 4 HOH 103 2103 2103 HOH HOH A . D 4 HOH 104 2104 2104 HOH HOH A . D 4 HOH 105 2105 2105 HOH HOH A . D 4 HOH 106 2106 2106 HOH HOH A . D 4 HOH 107 2107 2107 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OE1 ? A GLU 57 ? A GLU 46 ? 1_555 CA ? B CA . ? A CA 1107 ? 1_555 OE2 ? A GLU 57 ? A GLU 46 ? 1_555 51.4 ? 2 OE1 ? A GLU 57 ? A GLU 46 ? 1_555 CA ? B CA . ? A CA 1107 ? 1_555 OE1 ? A GLU 76 ? A GLU 65 ? 2_554 84.5 ? 3 OE2 ? A GLU 57 ? A GLU 46 ? 1_555 CA ? B CA . ? A CA 1107 ? 1_555 OE1 ? A GLU 76 ? A GLU 65 ? 2_554 113.4 ? 4 OE1 ? A GLU 57 ? A GLU 46 ? 1_555 CA ? B CA . ? A CA 1107 ? 1_555 OE1 ? A GLU 60 ? A GLU 49 ? 1_555 87.6 ? 5 OE2 ? A GLU 57 ? A GLU 46 ? 1_555 CA ? B CA . ? A CA 1107 ? 1_555 OE1 ? A GLU 60 ? A GLU 49 ? 1_555 100.7 ? 6 OE1 ? A GLU 76 ? A GLU 65 ? 2_554 CA ? B CA . ? A CA 1107 ? 1_555 OE1 ? A GLU 60 ? A GLU 49 ? 1_555 127.8 ? 7 OE1 ? A GLU 57 ? A GLU 46 ? 1_555 CA ? B CA . ? A CA 1107 ? 1_555 OE2 ? A GLU 60 ? A GLU 49 ? 1_555 111.9 ? 8 OE2 ? A GLU 57 ? A GLU 46 ? 1_555 CA ? B CA . ? A CA 1107 ? 1_555 OE2 ? A GLU 60 ? A GLU 49 ? 1_555 83.9 ? 9 OE1 ? A GLU 76 ? A GLU 65 ? 2_554 CA ? B CA . ? A CA 1107 ? 1_555 OE2 ? A GLU 60 ? A GLU 49 ? 1_555 161.8 ? 10 OE1 ? A GLU 60 ? A GLU 49 ? 1_555 CA ? B CA . ? A CA 1107 ? 1_555 OE2 ? A GLU 60 ? A GLU 49 ? 1_555 49.0 ? 11 NE2 ? A HIS 31 ? A HIS 20 ? 1_555 ZN ? C ZN . ? A ZN 1108 ? 1_555 OE1 ? A GLU 14 ? A GLU 3 ? 1_555 96.5 ? 12 NE2 ? A HIS 31 ? A HIS 20 ? 1_555 ZN ? C ZN . ? A ZN 1108 ? 1_555 O ? D HOH . ? A HOH 2106 ? 1_555 119.8 ? 13 OE1 ? A GLU 14 ? A GLU 3 ? 1_555 ZN ? C ZN . ? A ZN 1108 ? 1_555 O ? D HOH . ? A HOH 2106 ? 1_555 143.0 ? 14 NE2 ? A HIS 31 ? A HIS 20 ? 1_555 ZN ? C ZN . ? A ZN 1108 ? 1_555 OE2 ? A GLU 14 ? A GLU 3 ? 1_555 95.3 ? 15 OE1 ? A GLU 14 ? A GLU 3 ? 1_555 ZN ? C ZN . ? A ZN 1108 ? 1_555 OE2 ? A GLU 14 ? A GLU 3 ? 1_555 55.9 ? 16 O ? D HOH . ? A HOH 2106 ? 1_555 ZN ? C ZN . ? A ZN 1108 ? 1_555 OE2 ? A GLU 14 ? A GLU 3 ? 1_555 109.9 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-08-11 2 'Structure model' 1 1 2012-04-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 2 'Structure model' Other 3 2 'Structure model' 'Refinement description' 4 2 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.5.0102 ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 MOLREP phasing . ? 4 # _pdbx_entry_details.entry_id 2XC2 _pdbx_entry_details.compound_details 'ENGINEERED RESIDUE IN CHAIN A, LYS 3 TO GLU' _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;GSPEFTS AT N-TERMINUS CAME FROM THROMBIN CLEAVAGE OF THE EXPRESSION PLASMID ; # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 NZ _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 LYS _pdbx_validate_close_contact.auth_seq_id_1 57 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 2059 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.19 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CA _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 CYS _pdbx_validate_rmsd_angle.auth_seq_id_1 34 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CB _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 CYS _pdbx_validate_rmsd_angle.auth_seq_id_2 34 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 SG _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 CYS _pdbx_validate_rmsd_angle.auth_seq_id_3 34 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 120.91 _pdbx_validate_rmsd_angle.angle_target_value 114.20 _pdbx_validate_rmsd_angle.angle_deviation 6.71 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.10 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -10 ? A GLY 1 2 1 Y 1 A SER -9 ? A SER 2 3 1 Y 1 A PRO -8 ? A PRO 3 4 1 Y 1 A GLU -7 ? A GLU 4 5 1 Y 1 A PHE -6 ? A PHE 5 6 1 Y 1 A THR -5 ? A THR 6 7 1 Y 1 A SER -4 ? A SER 7 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CALCIUM ION' CA 3 'ZINC ION' ZN 4 water HOH #