HEADER RNA BINDING PROTEIN 18-APR-10 2XC7 TITLE SOLUTION STRUCTURE OF PHAX-RBD IN COMPLEX WITH SSRNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHORYLATED ADAPTER RNA EXPORT PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RNA_GG_BIND, RESIDUES 223-323; COMPND 5 SYNONYM: RNA U SMALL NUCLEAR RNA EXPORT ADAPTER PROTEIN; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: 5'-(AP*UP*CP*GP)-3'; COMPND 9 CHAIN: P; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES KEYWDS RNA BINDING PROTEIN, PROTEIN-RNA COMPLEX, NUCLEAR EXPORT EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR A.MOURAO,C.D.MACKERETH,A.VARROT,S.CUSACK,M.SATTLER REVDAT 4 15-MAY-24 2XC7 1 REMARK REVDAT 3 02-JUN-10 2XC7 1 JRNL REVDAT 2 12-MAY-10 2XC7 1 JRNL REVDAT 1 28-APR-10 2XC7 0 JRNL AUTH A.MOURAO,A.VARROT,C.D.MACKERETH,S.CUSACK,M.SATTLER JRNL TITL STRUCTURE AND RNA RECOGNITION BY THE SNRNA AND SNORNA JRNL TITL 2 TRANSPORT FACTOR PHAX. JRNL REF RNA V. 16 1205 2010 JRNL REFN ISSN 1355-8382 JRNL PMID 20430857 JRNL DOI 10.1261/RNA.2009910 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, READ,RICE, REMARK 3 SIMONSON,WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: WATER REFINEMENT REMARK 4 REMARK 4 2XC7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-APR-10. REMARK 100 THE DEPOSITION ID IS D_1290043674. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 297.0 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 50 REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : 90% WATER/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : HNCA; HNCACB; CBCACONH; REMARK 210 H(CCCO)NH-TOCSY; (H)CC(CO)NH- REMARK 210 TOCSY; 2D REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW REMARK 210 METHOD USED : ARIA1.2 REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : LEAST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NONE REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 79800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD22 LEU A 55 HB2 ASN A 72 1.20 REMARK 500 HE1 MET A 58 H4' U P 601 1.29 REMARK 500 OE2 GLU A 83 HZ2 LYS A 86 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 1 GLU A 96 CD GLU A 96 OE2 0.073 REMARK 500 2 GLU A 96 CD GLU A 96 OE2 0.069 REMARK 500 3 GLU A 96 CD GLU A 96 OE2 0.073 REMARK 500 4 TYR A 90 CE1 TYR A 90 CZ -0.093 REMARK 500 4 TYR A 90 CZ TYR A 90 CE2 0.092 REMARK 500 4 GLU A 96 CD GLU A 96 OE2 0.072 REMARK 500 5 GLU A 96 CD GLU A 96 OE2 0.073 REMARK 500 6 GLU A 96 CD GLU A 96 OE2 0.072 REMARK 500 7 TYR A 90 CE1 TYR A 90 CZ -0.109 REMARK 500 7 TYR A 90 CZ TYR A 90 CE2 0.104 REMARK 500 7 GLU A 96 CD GLU A 96 OE2 0.072 REMARK 500 8 PHE A 89 CZ PHE A 89 CE2 0.125 REMARK 500 8 GLU A 96 CD GLU A 96 OE2 0.069 REMARK 500 9 TYR A 90 CE1 TYR A 90 CZ -0.124 REMARK 500 9 TYR A 90 CZ TYR A 90 CE2 0.122 REMARK 500 9 GLU A 96 CD GLU A 96 OE2 0.074 REMARK 500 10 TYR A 90 CE1 TYR A 90 CZ -0.188 REMARK 500 10 TYR A 90 CZ TYR A 90 CE2 0.188 REMARK 500 10 GLU A 96 CD GLU A 96 OE2 0.070 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 U P 601 C4' - C3' - C2' ANGL. DEV. = -6.2 DEGREES REMARK 500 2 U P 601 C4' - C3' - C2' ANGL. DEV. = -6.6 DEGREES REMARK 500 3 U P 601 C4' - C3' - C2' ANGL. DEV. = -6.5 DEGREES REMARK 500 4 U P 601 C4' - C3' - C2' ANGL. DEV. = -6.1 DEGREES REMARK 500 5 U P 601 C4' - C3' - C2' ANGL. DEV. = -6.8 DEGREES REMARK 500 6 U P 601 C4' - C3' - C2' ANGL. DEV. = -6.1 DEGREES REMARK 500 10 U P 601 C4' - C3' - C2' ANGL. DEV. = -6.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 2 -53.49 -135.67 REMARK 500 1 ALA A 4 -22.07 -168.50 REMARK 500 1 LEU A 55 125.78 -177.43 REMARK 500 1 ILE A 88 -72.34 -70.29 REMARK 500 1 GLU A 92 -93.65 53.22 REMARK 500 1 ASN A 93 22.37 -145.98 REMARK 500 1 ASN A 99 -81.64 66.31 REMARK 500 2 MET A 3 -64.07 -132.15 REMARK 500 2 ALA A 4 52.89 -162.42 REMARK 500 2 LEU A 55 127.72 -176.87 REMARK 500 2 ARG A 64 80.67 73.14 REMARK 500 2 ILE A 88 -72.21 -70.95 REMARK 500 2 GLU A 92 -95.31 55.47 REMARK 500 3 LEU A 55 126.95 -177.34 REMARK 500 3 ARG A 62 49.37 -80.47 REMARK 500 3 ARG A 64 56.81 72.27 REMARK 500 3 ILE A 88 -71.44 -70.44 REMARK 500 3 GLU A 92 -83.61 60.58 REMARK 500 3 ASN A 93 20.10 -161.28 REMARK 500 3 GLU A 96 -67.35 72.72 REMARK 500 3 ASN A 99 68.76 -119.23 REMARK 500 4 ALA A 2 77.13 -100.27 REMARK 500 4 ASP A 6 68.59 -109.31 REMARK 500 4 LEU A 55 127.77 -176.58 REMARK 500 4 ARG A 64 88.13 69.95 REMARK 500 4 GLN A 94 99.82 65.75 REMARK 500 4 TYR A 97 -68.80 -151.24 REMARK 500 4 ALA A 102 -96.05 -90.35 REMARK 500 5 MET A 3 -83.66 -132.16 REMARK 500 5 ASP A 6 57.13 -92.42 REMARK 500 5 LYS A 23 67.81 -113.35 REMARK 500 5 ARG A 62 43.17 -84.43 REMARK 500 5 ARG A 64 71.82 64.13 REMARK 500 5 ILE A 88 -71.37 -70.00 REMARK 500 5 GLN A 94 -78.29 62.00 REMARK 500 5 ALA A 103 80.25 59.78 REMARK 500 6 ALA A 4 59.63 -117.64 REMARK 500 6 LYS A 23 67.91 -100.88 REMARK 500 6 ARG A 64 98.74 71.22 REMARK 500 6 ILE A 88 -72.03 -70.94 REMARK 500 6 GLU A 96 93.43 54.56 REMARK 500 6 LYS A 101 84.38 66.83 REMARK 500 7 ALA A 4 43.66 -108.05 REMARK 500 7 GLU A 5 -89.39 63.57 REMARK 500 7 LYS A 23 72.37 -104.49 REMARK 500 7 LEU A 55 124.47 -176.82 REMARK 500 7 ARG A 64 58.00 70.08 REMARK 500 7 ILE A 88 -70.84 -70.83 REMARK 500 7 GLU A 92 -90.92 51.81 REMARK 500 7 ALA A 102 -31.28 73.01 REMARK 500 REMARK 500 THIS ENTRY HAS 73 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2XC7 A 4 104 UNP Q9H814 PHAX_HUMAN 223 323 DBREF 2XC7 P 600 603 PDB 2XC7 2XC7 600 603 SEQADV 2XC7 GLY A 1 UNP Q9H814 EXPRESSION TAG SEQADV 2XC7 ALA A 2 UNP Q9H814 EXPRESSION TAG SEQADV 2XC7 MET A 3 UNP Q9H814 EXPRESSION TAG SEQRES 1 A 104 GLY ALA MET ALA GLU ASP SER GLN GLU LYS VAL ALA ASP SEQRES 2 A 104 GLU ILE SER PHE ARG LEU GLN GLU PRO LYS LYS ASP LEU SEQRES 3 A 104 ILE ALA ARG VAL VAL ARG ILE ILE GLY ASN LYS LYS ALA SEQRES 4 A 104 ILE GLU LEU LEU MET GLU THR ALA GLU VAL GLU GLN ASN SEQRES 5 A 104 GLY GLY LEU PHE ILE MET ASN GLY SER ARG ARG ARG THR SEQRES 6 A 104 PRO GLY GLY VAL PHE LEU ASN LEU LEU LYS ASN THR PRO SEQRES 7 A 104 SER ILE SER GLU GLU GLN ILE LYS ASP ILE PHE TYR ILE SEQRES 8 A 104 GLU ASN GLN LYS GLU TYR GLU ASN LYS LYS ALA ALA ARG SEQRES 1 P 4 A U C G HELIX 1 1 SER A 7 LEU A 19 1 13 HELIX 2 2 LYS A 23 GLY A 35 1 13 HELIX 3 3 GLY A 35 GLY A 53 1 19 HELIX 4 4 THR A 65 THR A 77 1 13 HELIX 5 5 SER A 81 TYR A 90 1 10 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1