HEADER HYDROLASE 22-APR-10 2XCE TITLE STRUCTURE OF YNCF IN COMPLEX WITH DUPNHPP COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYDROLASE COMPND 3 YNCF; COMPND 4 CHAIN: A, B, C, D, E, F; COMPND 5 SYNONYM: YNCF, DUTPASE, DUTP PYROPHOSPHATASE; COMPND 6 EC: 3.6.1.23; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: B834(DE3) KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.GARCIA-NAFRIA,L.BURCHELL,M.TAKEZAWA,N.RZECHORZEK,M.FOGG,K.S.WILSON REVDAT 4 20-DEC-23 2XCE 1 REMARK LINK REVDAT 3 11-APR-12 2XCE 1 JRNL REMARK VERSN HETSYN REVDAT 2 25-AUG-10 2XCE 1 JRNL REVDAT 1 11-AUG-10 2XCE 0 JRNL AUTH J.GARCIA-NAFRIA,L.BURCHELL,M.TAKEZAWA,N.RZECHORZEK,M.FOGG, JRNL AUTH 2 K.S.WILSON JRNL TITL THE STRUCTURE OF THE GENOMIC BACILLUS SUBTILIS DUTPASE: JRNL TITL 2 NOVEL FEATURES IN THE PHE-LID. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 66 953 2010 JRNL REFN ISSN 0907-4449 JRNL PMID 20823546 JRNL DOI 10.1107/S0907444910026272 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 78928 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.153 REMARK 3 R VALUE (WORKING SET) : 0.151 REMARK 3 FREE R VALUE : 0.187 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.500 REMARK 3 FREE R VALUE TEST SET COUNT : 4563 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5255 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.63 REMARK 3 BIN R VALUE (WORKING SET) : 0.2670 REMARK 3 BIN FREE R VALUE SET COUNT : 671 REMARK 3 BIN FREE R VALUE : 0.3100 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6300 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 212 REMARK 3 SOLVENT ATOMS : 792 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.38000 REMARK 3 B22 (A**2) : -0.05000 REMARK 3 B33 (A**2) : -0.33000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.110 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.108 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.072 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.896 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.962 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6705 ; 0.024 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 4618 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9081 ; 2.007 ; 1.995 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11283 ; 1.044 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 792 ; 6.897 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 311 ;35.392 ;24.727 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1226 ;15.141 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 36 ;15.995 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 978 ; 0.126 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7196 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1306 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3906 ; 1.191 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1572 ; 0.380 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6363 ; 1.995 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2799 ; 2.970 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2712 ; 4.608 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 130 REMARK 3 ORIGIN FOR THE GROUP (A): -9.3698 -7.4404 -43.0227 REMARK 3 T TENSOR REMARK 3 T11: 0.0512 T22: 0.0149 REMARK 3 T33: 0.0857 T12: 0.0056 REMARK 3 T13: -0.0076 T23: 0.0029 REMARK 3 L TENSOR REMARK 3 L11: 1.1705 L22: 0.5360 REMARK 3 L33: 0.4512 L12: 0.1695 REMARK 3 L13: -0.0093 L23: -0.1388 REMARK 3 S TENSOR REMARK 3 S11: -0.0166 S12: -0.0601 S13: -0.1597 REMARK 3 S21: -0.1110 S22: 0.0235 S23: 0.0426 REMARK 3 S31: 0.0675 S32: 0.0393 S33: -0.0068 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 130 REMARK 3 ORIGIN FOR THE GROUP (A): -4.8021 9.9734 -54.4508 REMARK 3 T TENSOR REMARK 3 T11: 0.0984 T22: 0.0499 REMARK 3 T33: 0.0290 T12: -0.0157 REMARK 3 T13: -0.0289 T23: -0.0117 REMARK 3 L TENSOR REMARK 3 L11: 0.3274 L22: 1.4577 REMARK 3 L33: 0.2930 L12: 0.1366 REMARK 3 L13: 0.0333 L23: -0.0135 REMARK 3 S TENSOR REMARK 3 S11: -0.0521 S12: 0.0738 S13: -0.0315 REMARK 3 S21: -0.1955 S22: 0.0196 S23: 0.0819 REMARK 3 S31: -0.0461 S32: 0.0821 S33: 0.0326 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 2 C 130 REMARK 3 ORIGIN FOR THE GROUP (A): 7.3964 4.5609 -38.0877 REMARK 3 T TENSOR REMARK 3 T11: 0.0156 T22: 0.0760 REMARK 3 T33: 0.0508 T12: -0.0201 REMARK 3 T13: 0.0107 T23: 0.0194 REMARK 3 L TENSOR REMARK 3 L11: 0.6124 L22: 0.4943 REMARK 3 L33: 1.1014 L12: 0.0782 REMARK 3 L13: 0.2681 L23: -0.0957 REMARK 3 S TENSOR REMARK 3 S11: -0.0330 S12: -0.0526 S13: -0.0800 REMARK 3 S21: -0.0418 S22: -0.0430 S23: -0.0520 REMARK 3 S31: -0.0706 S32: 0.2030 S33: 0.0759 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 2 D 130 REMARK 3 ORIGIN FOR THE GROUP (A): -4.8869 42.8922 -39.9611 REMARK 3 T TENSOR REMARK 3 T11: 0.0150 T22: 0.0863 REMARK 3 T33: 0.0492 T12: -0.0112 REMARK 3 T13: -0.0026 T23: -0.0241 REMARK 3 L TENSOR REMARK 3 L11: 0.3794 L22: 0.5795 REMARK 3 L33: 1.2599 L12: 0.1040 REMARK 3 L13: -0.0871 L23: 0.1588 REMARK 3 S TENSOR REMARK 3 S11: 0.0477 S12: -0.0618 S13: 0.0762 REMARK 3 S21: -0.0364 S22: -0.0554 S23: 0.0940 REMARK 3 S31: 0.0359 S32: -0.1628 S33: 0.0077 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 2 E 130 REMARK 3 ORIGIN FOR THE GROUP (A): 11.7722 54.6035 -44.9707 REMARK 3 T TENSOR REMARK 3 T11: 0.0454 T22: 0.0221 REMARK 3 T33: 0.0794 T12: 0.0116 REMARK 3 T13: 0.0259 T23: -0.0269 REMARK 3 L TENSOR REMARK 3 L11: 1.3156 L22: 0.5441 REMARK 3 L33: 0.4627 L12: 0.3107 REMARK 3 L13: -0.1712 L23: 0.1349 REMARK 3 S TENSOR REMARK 3 S11: 0.0779 S12: -0.0876 S13: 0.1969 REMARK 3 S21: -0.0784 S22: -0.0270 S23: -0.0647 REMARK 3 S31: -0.0794 S32: -0.0322 S33: -0.0509 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 2 F 130 REMARK 3 ORIGIN FOR THE GROUP (A): 6.5279 38.0277 -57.1718 REMARK 3 T TENSOR REMARK 3 T11: 0.1056 T22: 0.0419 REMARK 3 T33: 0.0089 T12: -0.0028 REMARK 3 T13: 0.0152 T23: 0.0020 REMARK 3 L TENSOR REMARK 3 L11: 0.5155 L22: 1.3196 REMARK 3 L33: 0.6673 L12: -0.0240 REMARK 3 L13: -0.2395 L23: 0.4812 REMARK 3 S TENSOR REMARK 3 S11: -0.0047 S12: 0.0484 S13: 0.0158 REMARK 3 S21: -0.2714 S22: 0.0019 S23: -0.0460 REMARK 3 S31: 0.0282 S32: -0.0716 S33: 0.0028 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B REMARK 3 FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U REMARK 3 FACTORS. REMARK 4 REMARK 4 2XCE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-APR-10. REMARK 100 THE DEPOSITION ID IS D_1290043697. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-MAR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 84193 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 35.080 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 9.400 REMARK 200 R MERGE (I) : 0.01000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.40 REMARK 200 R MERGE FOR SHELL (I) : 0.94000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2XCD REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M CACL2, 16% PEG 6K, 0.1M HEPES PH7 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 49.55800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.62600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 49.67250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 49.62600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 49.55800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 49.67250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12060 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -103.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -105.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 131 REMARK 465 ASN A 132 REMARK 465 GLU A 133 REMARK 465 ASP A 134 REMARK 465 ARG A 135 REMARK 465 GLY A 136 REMARK 465 GLY A 137 REMARK 465 LEU A 138 REMARK 465 GLY A 139 REMARK 465 SER A 140 REMARK 465 THR A 141 REMARK 465 GLY A 142 REMARK 465 THR A 143 REMARK 465 LYS A 144 REMARK 465 MET B 1 REMARK 465 GLY B 131 REMARK 465 ASN B 132 REMARK 465 GLU B 133 REMARK 465 ASP B 134 REMARK 465 ARG B 135 REMARK 465 GLY B 136 REMARK 465 GLY B 137 REMARK 465 LEU B 138 REMARK 465 GLY B 139 REMARK 465 SER B 140 REMARK 465 THR B 141 REMARK 465 GLY B 142 REMARK 465 THR B 143 REMARK 465 LYS B 144 REMARK 465 MET C 1 REMARK 465 GLY C 131 REMARK 465 ASN C 132 REMARK 465 GLU C 133 REMARK 465 ASP C 134 REMARK 465 ARG C 135 REMARK 465 GLY C 136 REMARK 465 GLY C 137 REMARK 465 LEU C 138 REMARK 465 GLY C 139 REMARK 465 SER C 140 REMARK 465 THR C 141 REMARK 465 GLY C 142 REMARK 465 THR C 143 REMARK 465 LYS C 144 REMARK 465 MET D 1 REMARK 465 GLY D 131 REMARK 465 ASN D 132 REMARK 465 GLU D 133 REMARK 465 ASP D 134 REMARK 465 ARG D 135 REMARK 465 GLY D 136 REMARK 465 GLY D 137 REMARK 465 LEU D 138 REMARK 465 GLY D 139 REMARK 465 SER D 140 REMARK 465 THR D 141 REMARK 465 GLY D 142 REMARK 465 THR D 143 REMARK 465 LYS D 144 REMARK 465 MET E 1 REMARK 465 GLY E 131 REMARK 465 ASN E 132 REMARK 465 GLU E 133 REMARK 465 ASP E 134 REMARK 465 ARG E 135 REMARK 465 GLY E 136 REMARK 465 GLY E 137 REMARK 465 LEU E 138 REMARK 465 GLY E 139 REMARK 465 SER E 140 REMARK 465 THR E 141 REMARK 465 GLY E 142 REMARK 465 THR E 143 REMARK 465 LYS E 144 REMARK 465 MET F 1 REMARK 465 GLY F 131 REMARK 465 ASN F 132 REMARK 465 GLU F 133 REMARK 465 ASP F 134 REMARK 465 ARG F 135 REMARK 465 GLY F 136 REMARK 465 GLY F 137 REMARK 465 LEU F 138 REMARK 465 GLY F 139 REMARK 465 SER F 140 REMARK 465 THR F 141 REMARK 465 GLY F 142 REMARK 465 THR F 143 REMARK 465 LYS F 144 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 ILE B 20 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 37 CG CD CE NZ REMARK 480 GLU A 40 OE1 OE2 REMARK 480 GLN B 22 CG CD OE1 NE2 REMARK 480 LYS B 37 CD CE NZ REMARK 480 GLU B 54 OE1 OE2 REMARK 480 LYS C 37 CD CE NZ REMARK 480 GLU C 40 OE1 OE2 REMARK 480 GLU D 12 OE1 OE2 REMARK 480 GLN D 22 CG CD OE1 NE2 REMARK 480 LYS F 37 CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 77 -65.43 73.30 REMARK 500 SER B 77 -63.78 63.42 REMARK 500 SER C 77 -73.22 71.02 REMARK 500 SER D 77 -64.99 64.65 REMARK 500 SER E 77 -69.05 73.83 REMARK 500 SER F 77 -63.70 69.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1132 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 112 OE1 REMARK 620 2 GOL A1133 O2 79.4 REMARK 620 3 GOL A1133 O3 71.3 64.9 REMARK 620 4 HOH A2035 O 83.7 162.2 114.7 REMARK 620 5 HOH A2036 O 69.2 100.2 139.8 68.1 REMARK 620 6 HOH A2130 O 124.7 119.0 72.2 75.6 139.5 REMARK 620 7 DUP B1131 O1G 140.5 71.1 116.2 120.7 90.5 93.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1134 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DUP A1131 O1G REMARK 620 2 GOL A1135 O1 115.6 REMARK 620 3 GOL A1135 O2 75.6 66.4 REMARK 620 4 HOH A2133 O 82.9 73.7 119.0 REMARK 620 5 GLN C 112 OE1 146.5 76.5 82.4 130.2 REMARK 620 6 HOH C2034 O 116.5 109.9 166.7 69.9 84.3 REMARK 620 7 HOH C2035 O 84.3 149.2 99.2 134.8 74.6 77.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C1132 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A2046 O REMARK 620 2 HOH B2045 O 68.9 REMARK 620 3 HOH C2051 O 65.8 66.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1132 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B2029 O REMARK 620 2 HOH B2030 O 78.7 REMARK 620 3 DUP C1131 O2A 91.3 162.9 REMARK 620 4 DUP C1131 O1B 97.7 86.2 81.4 REMARK 620 5 DUP C1131 O1G 174.4 95.9 94.3 83.1 REMARK 620 6 HOH C2124 O 80.8 98.0 94.0 175.2 98.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D1133 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DUP D1131 O2G REMARK 620 2 GOL D1134 O1 119.8 REMARK 620 3 GOL D1134 O2 79.5 65.5 REMARK 620 4 HOH D2140 O 85.2 73.6 120.0 REMARK 620 5 GLN F 112 OE1 146.7 75.2 81.3 128.0 REMARK 620 6 HOH F2030 O 111.3 109.9 168.6 66.1 87.5 REMARK 620 7 HOH F2032 O 81.9 148.5 100.2 134.6 75.0 78.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D1146 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH D2033 O REMARK 620 2 HOH D2034 O 80.0 REMARK 620 3 DUP E1131 O3G 174.9 95.3 REMARK 620 4 DUP E1131 O1B 97.3 87.0 84.3 REMARK 620 5 DUP E1131 O1A 89.8 164.6 95.2 82.8 REMARK 620 6 HOH E2119 O 80.8 97.8 98.1 174.4 91.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA E1147 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH D2055 O REMARK 620 2 HOH E2052 O 64.9 REMARK 620 3 HOH F2052 O 66.4 61.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA E1146 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH E2030 O REMARK 620 2 HOH E2032 O 78.0 REMARK 620 3 DUP F1131 O2G 172.4 94.4 REMARK 620 4 DUP F1131 O2B 96.9 88.3 82.5 REMARK 620 5 DUP F1131 O1A 88.9 162.2 98.5 81.2 REMARK 620 6 HOH F2133 O 87.1 100.0 94.6 171.4 91.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DUP A 1131 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1132 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1133 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DUP B 1131 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 1132 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DUP C 1131 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1134 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1135 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DUP D 1131 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA D 1146 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL D 1132 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DUP E 1131 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA E 1146 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA E 1147 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL E 1132 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DUP F 1131 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA D 1133 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL F 1132 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL D 1134 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2XCD RELATED DB: PDB REMARK 900 STRUCTURE OF YNCF,THE GENOMIC DUTPASE FROM BACILLUS SUBTILIS DBREF 2XCE A 1 144 UNP O31801 YNCF_BACSU 1 144 DBREF 2XCE B 1 144 UNP O31801 YNCF_BACSU 1 144 DBREF 2XCE C 1 144 UNP O31801 YNCF_BACSU 1 144 DBREF 2XCE D 1 144 UNP O31801 YNCF_BACSU 1 144 DBREF 2XCE E 1 144 UNP O31801 YNCF_BACSU 1 144 DBREF 2XCE F 1 144 UNP O31801 YNCF_BACSU 1 144 SEQRES 1 A 144 MET THR MET GLN ILE LYS ILE LYS TYR LEU ASP GLU THR SEQRES 2 A 144 GLN THR ARG ILE SER LYS ILE GLU GLN GLY ASP TRP ILE SEQRES 3 A 144 ASP LEU ARG ALA ALA GLU ASP VAL THR ILE LYS LYS ASP SEQRES 4 A 144 GLU PHE LYS LEU VAL PRO LEU GLY VAL ALA MET GLU LEU SEQRES 5 A 144 PRO GLU GLY TYR GLU ALA HIS VAL VAL PRO ARG SER SER SEQRES 6 A 144 THR TYR LYS ASN PHE GLY VAL ILE GLN THR ASN SER MET SEQRES 7 A 144 GLY VAL ILE ASP GLU SER TYR LYS GLY ASP ASN ASP PHE SEQRES 8 A 144 TRP PHE PHE PRO ALA TYR ALA LEU ARG ASP THR GLU ILE SEQRES 9 A 144 LYS LYS GLY ASP ARG ILE CYS GLN PHE ARG ILE MET LYS SEQRES 10 A 144 LYS MET PRO ALA VAL GLU LEU VAL GLU VAL GLU HIS LEU SEQRES 11 A 144 GLY ASN GLU ASP ARG GLY GLY LEU GLY SER THR GLY THR SEQRES 12 A 144 LYS SEQRES 1 B 144 MET THR MET GLN ILE LYS ILE LYS TYR LEU ASP GLU THR SEQRES 2 B 144 GLN THR ARG ILE SER LYS ILE GLU GLN GLY ASP TRP ILE SEQRES 3 B 144 ASP LEU ARG ALA ALA GLU ASP VAL THR ILE LYS LYS ASP SEQRES 4 B 144 GLU PHE LYS LEU VAL PRO LEU GLY VAL ALA MET GLU LEU SEQRES 5 B 144 PRO GLU GLY TYR GLU ALA HIS VAL VAL PRO ARG SER SER SEQRES 6 B 144 THR TYR LYS ASN PHE GLY VAL ILE GLN THR ASN SER MET SEQRES 7 B 144 GLY VAL ILE ASP GLU SER TYR LYS GLY ASP ASN ASP PHE SEQRES 8 B 144 TRP PHE PHE PRO ALA TYR ALA LEU ARG ASP THR GLU ILE SEQRES 9 B 144 LYS LYS GLY ASP ARG ILE CYS GLN PHE ARG ILE MET LYS SEQRES 10 B 144 LYS MET PRO ALA VAL GLU LEU VAL GLU VAL GLU HIS LEU SEQRES 11 B 144 GLY ASN GLU ASP ARG GLY GLY LEU GLY SER THR GLY THR SEQRES 12 B 144 LYS SEQRES 1 C 144 MET THR MET GLN ILE LYS ILE LYS TYR LEU ASP GLU THR SEQRES 2 C 144 GLN THR ARG ILE SER LYS ILE GLU GLN GLY ASP TRP ILE SEQRES 3 C 144 ASP LEU ARG ALA ALA GLU ASP VAL THR ILE LYS LYS ASP SEQRES 4 C 144 GLU PHE LYS LEU VAL PRO LEU GLY VAL ALA MET GLU LEU SEQRES 5 C 144 PRO GLU GLY TYR GLU ALA HIS VAL VAL PRO ARG SER SER SEQRES 6 C 144 THR TYR LYS ASN PHE GLY VAL ILE GLN THR ASN SER MET SEQRES 7 C 144 GLY VAL ILE ASP GLU SER TYR LYS GLY ASP ASN ASP PHE SEQRES 8 C 144 TRP PHE PHE PRO ALA TYR ALA LEU ARG ASP THR GLU ILE SEQRES 9 C 144 LYS LYS GLY ASP ARG ILE CYS GLN PHE ARG ILE MET LYS SEQRES 10 C 144 LYS MET PRO ALA VAL GLU LEU VAL GLU VAL GLU HIS LEU SEQRES 11 C 144 GLY ASN GLU ASP ARG GLY GLY LEU GLY SER THR GLY THR SEQRES 12 C 144 LYS SEQRES 1 D 144 MET THR MET GLN ILE LYS ILE LYS TYR LEU ASP GLU THR SEQRES 2 D 144 GLN THR ARG ILE SER LYS ILE GLU GLN GLY ASP TRP ILE SEQRES 3 D 144 ASP LEU ARG ALA ALA GLU ASP VAL THR ILE LYS LYS ASP SEQRES 4 D 144 GLU PHE LYS LEU VAL PRO LEU GLY VAL ALA MET GLU LEU SEQRES 5 D 144 PRO GLU GLY TYR GLU ALA HIS VAL VAL PRO ARG SER SER SEQRES 6 D 144 THR TYR LYS ASN PHE GLY VAL ILE GLN THR ASN SER MET SEQRES 7 D 144 GLY VAL ILE ASP GLU SER TYR LYS GLY ASP ASN ASP PHE SEQRES 8 D 144 TRP PHE PHE PRO ALA TYR ALA LEU ARG ASP THR GLU ILE SEQRES 9 D 144 LYS LYS GLY ASP ARG ILE CYS GLN PHE ARG ILE MET LYS SEQRES 10 D 144 LYS MET PRO ALA VAL GLU LEU VAL GLU VAL GLU HIS LEU SEQRES 11 D 144 GLY ASN GLU ASP ARG GLY GLY LEU GLY SER THR GLY THR SEQRES 12 D 144 LYS SEQRES 1 E 144 MET THR MET GLN ILE LYS ILE LYS TYR LEU ASP GLU THR SEQRES 2 E 144 GLN THR ARG ILE SER LYS ILE GLU GLN GLY ASP TRP ILE SEQRES 3 E 144 ASP LEU ARG ALA ALA GLU ASP VAL THR ILE LYS LYS ASP SEQRES 4 E 144 GLU PHE LYS LEU VAL PRO LEU GLY VAL ALA MET GLU LEU SEQRES 5 E 144 PRO GLU GLY TYR GLU ALA HIS VAL VAL PRO ARG SER SER SEQRES 6 E 144 THR TYR LYS ASN PHE GLY VAL ILE GLN THR ASN SER MET SEQRES 7 E 144 GLY VAL ILE ASP GLU SER TYR LYS GLY ASP ASN ASP PHE SEQRES 8 E 144 TRP PHE PHE PRO ALA TYR ALA LEU ARG ASP THR GLU ILE SEQRES 9 E 144 LYS LYS GLY ASP ARG ILE CYS GLN PHE ARG ILE MET LYS SEQRES 10 E 144 LYS MET PRO ALA VAL GLU LEU VAL GLU VAL GLU HIS LEU SEQRES 11 E 144 GLY ASN GLU ASP ARG GLY GLY LEU GLY SER THR GLY THR SEQRES 12 E 144 LYS SEQRES 1 F 144 MET THR MET GLN ILE LYS ILE LYS TYR LEU ASP GLU THR SEQRES 2 F 144 GLN THR ARG ILE SER LYS ILE GLU GLN GLY ASP TRP ILE SEQRES 3 F 144 ASP LEU ARG ALA ALA GLU ASP VAL THR ILE LYS LYS ASP SEQRES 4 F 144 GLU PHE LYS LEU VAL PRO LEU GLY VAL ALA MET GLU LEU SEQRES 5 F 144 PRO GLU GLY TYR GLU ALA HIS VAL VAL PRO ARG SER SER SEQRES 6 F 144 THR TYR LYS ASN PHE GLY VAL ILE GLN THR ASN SER MET SEQRES 7 F 144 GLY VAL ILE ASP GLU SER TYR LYS GLY ASP ASN ASP PHE SEQRES 8 F 144 TRP PHE PHE PRO ALA TYR ALA LEU ARG ASP THR GLU ILE SEQRES 9 F 144 LYS LYS GLY ASP ARG ILE CYS GLN PHE ARG ILE MET LYS SEQRES 10 F 144 LYS MET PRO ALA VAL GLU LEU VAL GLU VAL GLU HIS LEU SEQRES 11 F 144 GLY ASN GLU ASP ARG GLY GLY LEU GLY SER THR GLY THR SEQRES 12 F 144 LYS HET DUP A1131 28 HET CA A1132 1 HET GOL A1133 6 HET CA A1134 1 HET GOL A1135 6 HET DUP B1131 28 HET CA B1132 1 HET DUP C1131 28 HET CA C1132 1 HET DUP D1131 28 HET GOL D1132 6 HET CA D1133 1 HET GOL D1134 6 HET CA D1146 1 HET DUP E1131 28 HET GOL E1132 6 HET CA E1146 1 HET CA E1147 1 HET DUP F1131 28 HET GOL F1132 6 HETNAM DUP 2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE HETNAM CA CALCIUM ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 7 DUP 6(C9 H16 N3 O13 P3) FORMUL 8 CA 8(CA 2+) FORMUL 9 GOL 6(C3 H8 O3) FORMUL 27 HOH *792(H2 O) HELIX 1 1 SER A 65 GLY A 71 1 7 HELIX 2 2 SER B 65 GLY B 71 1 7 HELIX 3 3 SER C 65 GLY C 71 1 7 HELIX 4 4 SER D 65 GLY D 71 1 7 HELIX 5 5 SER E 65 GLY E 71 1 7 HELIX 6 6 SER F 65 GLY F 71 1 7 SHEET 1 AA 3 VAL A 48 GLU A 51 0 SHEET 2 AA 3 MET A 3 TYR A 9 -1 O LYS A 6 N GLU A 51 SHEET 3 AA 3 VAL B 122 GLU B 126 1 O GLU B 123 N ILE A 5 SHEET 1 AB 4 ILE A 26 ARG A 29 0 SHEET 2 AB 4 ARG A 109 LYS A 117 -1 N ILE A 110 O LEU A 28 SHEET 3 AB 4 TYR A 56 PRO A 62 -1 O GLU A 57 N MET A 116 SHEET 4 AB 4 GLY A 79 ASP A 82 -1 O GLY A 79 N VAL A 60 SHEET 1 AC 2 VAL A 34 ILE A 36 0 SHEET 2 AC 2 THR A 102 ILE A 104 -1 O THR A 102 N ILE A 36 SHEET 1 AD 3 PHE A 41 PRO A 45 0 SHEET 2 AD 3 PHE A 93 ALA A 98 -1 O PHE A 94 N VAL A 44 SHEET 3 AD 3 VAL A 72 GLN A 74 -1 O ILE A 73 N TYR A 97 SHEET 1 AE 3 VAL A 122 GLU A 126 0 SHEET 2 AE 3 MET C 3 TYR C 9 1 O MET C 3 N GLU A 123 SHEET 3 AE 3 VAL C 48 GLU C 51 -1 O ALA C 49 N LYS C 8 SHEET 1 BA 5 VAL B 72 GLN B 74 0 SHEET 2 BA 5 PHE B 91 ALA B 98 -1 O TYR B 97 N ILE B 73 SHEET 3 BA 5 PHE B 41 GLU B 51 -1 O LYS B 42 N ALA B 96 SHEET 4 BA 5 MET B 3 TYR B 9 -1 O LYS B 6 N GLU B 51 SHEET 5 BA 5 VAL C 122 GLU C 126 1 O GLU C 123 N ILE B 5 SHEET 1 BB 4 ILE B 26 ARG B 29 0 SHEET 2 BB 4 ARG B 109 LYS B 117 -1 O CYS B 111 N LEU B 28 SHEET 3 BB 4 TYR B 56 PRO B 62 -1 O GLU B 57 N MET B 116 SHEET 4 BB 4 GLY B 79 ASP B 82 -1 O GLY B 79 N VAL B 60 SHEET 1 BC 2 VAL B 34 ILE B 36 0 SHEET 2 BC 2 THR B 102 ILE B 104 -1 O THR B 102 N ILE B 36 SHEET 1 CA 4 ILE C 26 ARG C 29 0 SHEET 2 CA 4 ARG C 109 LYS C 117 -1 N ILE C 110 O LEU C 28 SHEET 3 CA 4 TYR C 56 PRO C 62 -1 O GLU C 57 N MET C 116 SHEET 4 CA 4 GLY C 79 ILE C 81 -1 O GLY C 79 N VAL C 60 SHEET 1 CB 2 VAL C 34 ILE C 36 0 SHEET 2 CB 2 THR C 102 ILE C 104 -1 O THR C 102 N ILE C 36 SHEET 1 CC 3 PHE C 41 PRO C 45 0 SHEET 2 CC 3 PHE C 93 ALA C 98 -1 O PHE C 94 N VAL C 44 SHEET 3 CC 3 VAL C 72 GLN C 74 -1 O ILE C 73 N TYR C 97 SHEET 1 DA 5 VAL D 72 GLN D 74 0 SHEET 2 DA 5 PHE D 91 ALA D 98 -1 O TYR D 97 N ILE D 73 SHEET 3 DA 5 PHE D 41 GLU D 51 -1 O LYS D 42 N ALA D 96 SHEET 4 DA 5 MET D 3 TYR D 9 -1 O LYS D 6 N GLU D 51 SHEET 5 DA 5 VAL E 122 GLU E 126 1 O GLU E 123 N ILE D 5 SHEET 1 DB 4 ILE D 26 ARG D 29 0 SHEET 2 DB 4 ARG D 109 LYS D 117 -1 O CYS D 111 N LEU D 28 SHEET 3 DB 4 TYR D 56 PRO D 62 -1 O GLU D 57 N MET D 116 SHEET 4 DB 4 GLY D 79 ASP D 82 -1 O GLY D 79 N VAL D 60 SHEET 1 DC 2 VAL D 34 ILE D 36 0 SHEET 2 DC 2 THR D 102 ILE D 104 -1 O THR D 102 N ILE D 36 SHEET 1 DD 5 VAL D 122 GLU D 126 0 SHEET 2 DD 5 MET F 3 TYR F 9 1 O MET F 3 N GLU D 123 SHEET 3 DD 5 PHE F 41 GLU F 51 -1 O ALA F 49 N LYS F 8 SHEET 4 DD 5 PHE F 91 ALA F 98 -1 O TRP F 92 N LEU F 46 SHEET 5 DD 5 VAL F 72 GLN F 74 -1 O ILE F 73 N TYR F 97 SHEET 1 EA 3 VAL E 48 GLU E 51 0 SHEET 2 EA 3 MET E 3 TYR E 9 -1 O LYS E 6 N GLU E 51 SHEET 3 EA 3 VAL F 122 GLU F 126 1 O GLU F 123 N ILE E 5 SHEET 1 EB 4 ILE E 26 ARG E 29 0 SHEET 2 EB 4 ARG E 109 LYS E 117 -1 O CYS E 111 N LEU E 28 SHEET 3 EB 4 TYR E 56 PRO E 62 -1 O GLU E 57 N MET E 116 SHEET 4 EB 4 GLY E 79 ASP E 82 -1 O GLY E 79 N VAL E 60 SHEET 1 EC 2 VAL E 34 ILE E 36 0 SHEET 2 EC 2 THR E 102 ILE E 104 -1 O THR E 102 N ILE E 36 SHEET 1 ED 3 PHE E 41 PRO E 45 0 SHEET 2 ED 3 PHE E 93 ALA E 98 -1 O PHE E 94 N VAL E 44 SHEET 3 ED 3 VAL E 72 GLN E 74 -1 O ILE E 73 N TYR E 97 SHEET 1 FA 4 ILE F 26 ARG F 29 0 SHEET 2 FA 4 ARG F 109 LYS F 117 -1 N ILE F 110 O LEU F 28 SHEET 3 FA 4 TYR F 56 PRO F 62 -1 O GLU F 57 N MET F 116 SHEET 4 FA 4 GLY F 79 ILE F 81 -1 O GLY F 79 N VAL F 60 SHEET 1 FB 2 VAL F 34 ILE F 36 0 SHEET 2 FB 2 THR F 102 ILE F 104 -1 O THR F 102 N ILE F 36 LINK OE1 GLN A 112 CA CA A1132 1555 1555 2.78 LINK O1G DUP A1131 CA CA A1134 1555 1555 2.34 LINK CA CA A1132 O2 GOL A1133 1555 1555 2.39 LINK CA CA A1132 O3 GOL A1133 1555 1555 2.46 LINK CA CA A1132 O HOH A2035 1555 1555 2.54 LINK CA CA A1132 O HOH A2036 1555 1555 2.15 LINK CA CA A1132 O HOH A2130 1555 1555 2.26 LINK CA CA A1132 O1G DUP B1131 1555 1555 2.23 LINK CA CA A1134 O1 GOL A1135 1555 1555 2.44 LINK CA CA A1134 O2 GOL A1135 1555 1555 2.32 LINK CA CA A1134 O HOH A2133 1555 1555 2.34 LINK CA CA A1134 OE1 GLN C 112 1555 1555 2.44 LINK CA CA A1134 O HOH C2034 1555 1555 2.37 LINK CA CA A1134 O HOH C2035 1555 1555 2.33 LINK O HOH A2046 CA CA C1132 1555 1555 2.43 LINK CA CA B1132 O HOH B2029 1555 1555 2.44 LINK CA CA B1132 O HOH B2030 1555 1555 2.27 LINK CA CA B1132 O2A DUP C1131 1555 1555 2.30 LINK CA CA B1132 O1B DUP C1131 1555 1555 2.22 LINK CA CA B1132 O1G DUP C1131 1555 1555 2.20 LINK CA CA B1132 O HOH C2124 1555 1555 2.36 LINK O HOH B2045 CA CA C1132 1555 1555 2.05 LINK CA CA C1132 O HOH C2051 1555 1555 2.54 LINK O2G DUP D1131 CA CA D1133 1555 1555 2.34 LINK CA CA D1133 O1 GOL D1134 1555 1555 2.38 LINK CA CA D1133 O2 GOL D1134 1555 1555 2.33 LINK CA CA D1133 O HOH D2140 1555 1555 2.42 LINK CA CA D1133 OE1 GLN F 112 1555 1555 2.48 LINK CA CA D1133 O HOH F2030 1555 1555 2.51 LINK CA CA D1133 O HOH F2032 1555 1555 2.36 LINK CA CA D1146 O HOH D2033 1555 1555 2.39 LINK CA CA D1146 O HOH D2034 1555 1555 2.38 LINK CA CA D1146 O3G DUP E1131 1555 1555 2.19 LINK CA CA D1146 O1B DUP E1131 1555 1555 2.24 LINK CA CA D1146 O1A DUP E1131 1555 1555 2.38 LINK CA CA D1146 O HOH E2119 1555 1555 2.33 LINK O HOH D2055 CA CA E1147 1555 1555 2.22 LINK CA CA E1146 O HOH E2030 1555 1555 2.34 LINK CA CA E1146 O HOH E2032 1555 1555 2.33 LINK CA CA E1146 O2G DUP F1131 1555 1555 2.20 LINK CA CA E1146 O2B DUP F1131 1555 1555 2.34 LINK CA CA E1146 O1A DUP F1131 1555 1555 2.36 LINK CA CA E1146 O HOH F2133 1555 1555 2.23 LINK CA CA E1147 O HOH E2052 1555 1555 2.36 LINK CA CA E1147 O HOH F2052 1555 1555 2.53 SITE 1 AC1 25 ASN A 76 GLY A 79 ILE A 81 TYR A 85 SITE 2 AC1 25 TRP A 92 PHE A 93 PRO A 95 CA A1134 SITE 3 AC1 25 GOL A1135 HOH A2080 HOH A2122 HOH A2123 SITE 4 AC1 25 HOH A2125 HOH A2126 HOH A2127 HOH A2128 SITE 5 AC1 25 HOH A2129 HOH A2135 SER C 64 HOH C2035 SITE 6 AC1 25 HOH C2070 HOH C2071 ASP D 33 LYS D 105 SITE 7 AC1 25 HOH D2106 SITE 1 AC2 6 GLN A 112 GOL A1133 HOH A2035 HOH A2036 SITE 2 AC2 6 HOH A2130 DUP B1131 SITE 1 AC3 9 TRP A 25 GLN A 112 CA A1132 HOH A2130 SITE 2 AC3 9 HOH A2131 HOH A2132 VAL B 80 DUP B1131 SITE 3 AC3 9 HOH B2072 SITE 1 AC4 23 SER A 64 CA A1132 GOL A1133 HOH A2036 SITE 2 AC4 23 HOH A2068 HOH A2132 ASN B 76 GLY B 79 SITE 3 AC4 23 ILE B 81 TYR B 85 TRP B 92 PHE B 93 SITE 4 AC4 23 PRO B 95 HOH B2072 HOH B2116 HOH B2117 SITE 5 AC4 23 HOH B2118 HOH B2119 HOH B2120 HOH B2121 SITE 6 AC4 23 LYS E 105 HOH E2042 HOH E2098 SITE 1 AC5 4 HOH B2029 HOH B2030 DUP C1131 HOH C2124 SITE 1 AC6 24 ARG B 63 SER B 64 SER B 65 GLN B 112 SITE 2 AC6 24 CA B1132 HOH B2030 ASN C 76 GLY C 79 SITE 3 AC6 24 VAL C 80 ILE C 81 TYR C 85 TRP C 92 SITE 4 AC6 24 PHE C 93 PRO C 95 HOH C2087 HOH C2123 SITE 5 AC6 24 HOH C2125 HOH C2126 HOH C2127 HOH C2128 SITE 6 AC6 24 HOH C2129 HOH C2130 GLU F 103 HOH F2112 SITE 1 AC7 6 DUP A1131 GOL A1135 HOH A2133 GLN C 112 SITE 2 AC7 6 HOH C2034 HOH C2035 SITE 1 AC8 8 VAL A 80 DUP A1131 CA A1134 HOH A2133 SITE 2 AC8 8 HOH A2134 HOH A2135 TRP C 25 GLN C 112 SITE 1 AC9 28 ASP B 33 GLU B 103 LYS B 105 ASN D 76 SITE 2 AC9 28 GLY D 79 ILE D 81 TYR D 85 TRP D 92 SITE 3 AC9 28 PHE D 93 PRO D 95 CA D1133 GOL D1134 SITE 4 AC9 28 HOH D2126 HOH D2127 HOH D2128 HOH D2129 SITE 5 AC9 28 HOH D2130 HOH D2131 HOH D2132 HOH D2133 SITE 6 AC9 28 HOH D2134 HOH D2135 HOH D2136 HOH D2138 SITE 7 AC9 28 SER F 64 HOH F2032 HOH F2071 HOH F2072 SITE 1 BC1 4 HOH D2033 HOH D2034 DUP E1131 HOH E2119 SITE 1 BC2 9 ASN C 69 ASP C 108 ARG C 109 HOH C2074 SITE 2 BC2 9 HOH C2081 GLY D 107 ASP D 108 ARG D 109 SITE 3 BC2 9 HOH D2137 SITE 1 BC3 22 HOH C2106 ARG D 63 SER D 64 SER D 65 SITE 2 BC3 22 GLN D 112 CA D1146 ASN E 76 GLY E 79 SITE 3 BC3 22 VAL E 80 ILE E 81 TYR E 85 TRP E 92 SITE 4 BC3 22 PHE E 93 PRO E 95 HOH E2079 HOH E2118 SITE 5 BC3 22 HOH E2120 HOH E2121 HOH E2122 HOH E2123 SITE 6 BC3 22 HOH E2124 HOH E2125 SITE 1 BC4 4 HOH E2030 HOH E2032 DUP F1131 HOH F2133 SITE 1 BC5 3 HOH D2055 HOH E2052 HOH F2052 SITE 1 BC6 10 ASN A 69 PHE A 70 ASP A 108 ARG A 109 SITE 2 BC6 10 HOH A2069 HOH A2073 GLY E 107 ASP E 108 SITE 3 BC6 10 ARG E 109 HOH E2126 SITE 1 BC7 21 HOH A2099 ARG E 63 SER E 64 SER E 65 SITE 2 BC7 21 GLN E 112 CA E1146 ASN F 76 GLY F 79 SITE 3 BC7 21 VAL F 80 ILE F 81 TYR F 85 TRP F 92 SITE 4 BC7 21 PHE F 93 PRO F 95 HOH F2089 HOH F2132 SITE 5 BC7 21 HOH F2135 HOH F2136 HOH F2137 HOH F2138 SITE 6 BC7 21 HOH F2139 SITE 1 BC8 6 DUP D1131 GOL D1134 HOH D2140 GLN F 112 SITE 2 BC8 6 HOH F2030 HOH F2032 SITE 1 BC9 10 GLY B 107 ASP B 108 ARG B 109 ASN F 69 SITE 2 BC9 10 PHE F 70 ASP F 108 ARG F 109 HOH F2075 SITE 3 BC9 10 HOH F2082 HOH F2140 SITE 1 CC1 8 VAL D 80 DUP D1131 CA D1133 HOH D2138 SITE 2 CC1 8 HOH D2139 HOH D2140 TRP F 25 GLN F 112 CRYST1 99.116 99.345 99.252 90.00 90.00 90.00 P 21 21 21 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010089 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010066 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010075 0.00000