HEADER VIRAL PROTEIN 23-APR-10 2XCJ TITLE CRYSTAL STRUCTURE OF P2 C, THE IMMUNITY REPRESSOR OF TEMPERATE E. COLI TITLE 2 PHAGE P2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: C PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE P2; SOURCE 3 ORGANISM_TAXID: 10679; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS DIRECT REPEATS, REPRESSOR, HELIX-TURN-HELIX, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.MASSAD,K.SKAAR,M.HOGBOM,P.STENMARK REVDAT 3 08-MAY-24 2XCJ 1 REMARK LINK REVDAT 2 15-DEC-10 2XCJ 1 JRNL HETNAM FORMUL REVDAT 1 28-JUL-10 2XCJ 0 JRNL AUTH T.MASSAD,K.SKAAR,H.NILSSON,P.DAMBERG,P.HENRIKSSON-PELTOLA, JRNL AUTH 2 E.HAGGARD-LJUNGQUIST,M.HOGBOM,P.STENMARK JRNL TITL CRYSTAL STRUCTURE OF THE P2 C-REPRESSOR: A BINDER OF JRNL TITL 2 NON-PALINDROMIC DIRECT DNA REPEATS. JRNL REF NUCLEIC ACIDS RES. V. 38 7778 2010 JRNL REFN ISSN 0305-1048 JRNL PMID 20639540 JRNL DOI 10.1093/NAR/GKQ626 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0044 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 32402 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.151 REMARK 3 R VALUE (WORKING SET) : 0.149 REMARK 3 FREE R VALUE : 0.173 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.800 REMARK 3 FREE R VALUE TEST SET COUNT : 3125 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2372 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.3200 REMARK 3 BIN FREE R VALUE SET COUNT : 223 REMARK 3 BIN FREE R VALUE : 0.3090 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1324 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 17 REMARK 3 SOLVENT ATOMS : 210 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 0.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 10.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.77000 REMARK 3 B22 (A**2) : 0.77000 REMARK 3 B33 (A**2) : -1.15000 REMARK 3 B12 (A**2) : 0.38000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.068 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.071 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.047 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.447 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.974 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.967 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1406 ; 0.025 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 949 ; 0.008 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1916 ; 1.989 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2334 ; 1.119 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 177 ; 5.245 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 59 ;44.616 ;24.407 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 237 ;12.776 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;23.713 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 215 ; 0.130 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1535 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 273 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 860 ; 1.086 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 339 ; 0.393 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1404 ; 1.727 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 546 ; 2.883 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 506 ; 4.131 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 17 REMARK 3 ORIGIN FOR THE GROUP (A): -9.7110 43.4440 5.8270 REMARK 3 T TENSOR REMARK 3 T11: 0.2392 T22: 0.1404 REMARK 3 T33: 0.0126 T12: -0.0308 REMARK 3 T13: -0.0204 T23: -0.0153 REMARK 3 L TENSOR REMARK 3 L11: 9.4296 L22: 7.6025 REMARK 3 L33: 7.2721 L12: 3.9789 REMARK 3 L13: -3.3153 L23: -1.9153 REMARK 3 S TENSOR REMARK 3 S11: -0.1871 S12: 0.5865 S13: 0.1485 REMARK 3 S21: -0.8711 S22: 0.0742 S23: 0.2112 REMARK 3 S31: 0.1190 S32: -0.8959 S33: 0.1128 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 18 A 28 REMARK 3 ORIGIN FOR THE GROUP (A): -2.0100 33.3450 4.4480 REMARK 3 T TENSOR REMARK 3 T11: 0.4803 T22: 0.1276 REMARK 3 T33: 0.1549 T12: -0.0306 REMARK 3 T13: 0.2008 T23: -0.0664 REMARK 3 L TENSOR REMARK 3 L11: 9.8260 L22: 9.0018 REMARK 3 L33: 5.5260 L12: -1.6464 REMARK 3 L13: 2.2152 L23: -2.6636 REMARK 3 S TENSOR REMARK 3 S11: -0.1896 S12: 0.2716 S13: -0.3352 REMARK 3 S21: -0.9982 S22: 0.0460 S23: -0.5595 REMARK 3 S31: 0.8405 S32: -0.2590 S33: 0.1436 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 29 A 44 REMARK 3 ORIGIN FOR THE GROUP (A): -12.6290 31.1310 8.7480 REMARK 3 T TENSOR REMARK 3 T11: 0.3700 T22: 0.2047 REMARK 3 T33: 0.1152 T12: -0.1596 REMARK 3 T13: 0.0452 T23: -0.0899 REMARK 3 L TENSOR REMARK 3 L11: 7.2761 L22: 9.4302 REMARK 3 L33: 5.6749 L12: -1.7105 REMARK 3 L13: -3.7322 L23: 0.1170 REMARK 3 S TENSOR REMARK 3 S11: -0.3526 S12: 0.5968 S13: -0.6796 REMARK 3 S21: -1.1935 S22: 0.1732 S23: 0.2316 REMARK 3 S31: 0.9225 S32: -0.4740 S33: 0.1794 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 45 A 78 REMARK 3 ORIGIN FOR THE GROUP (A): -3.6920 45.4530 15.3240 REMARK 3 T TENSOR REMARK 3 T11: 0.0415 T22: 0.0565 REMARK 3 T33: 0.0108 T12: -0.0126 REMARK 3 T13: 0.0097 T23: -0.0132 REMARK 3 L TENSOR REMARK 3 L11: 4.4367 L22: 7.0213 REMARK 3 L33: 4.0702 L12: 2.4664 REMARK 3 L13: -1.4860 L23: -1.8744 REMARK 3 S TENSOR REMARK 3 S11: -0.0453 S12: 0.0031 S13: 0.0077 REMARK 3 S21: 0.0185 S22: -0.0106 S23: -0.1722 REMARK 3 S31: -0.0076 S32: 0.0017 S33: 0.0559 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 79 A 85 REMARK 3 ORIGIN FOR THE GROUP (A): -8.7560 52.6830 5.5670 REMARK 3 T TENSOR REMARK 3 T11: 0.1472 T22: 0.1980 REMARK 3 T33: 0.1196 T12: 0.0398 REMARK 3 T13: -0.0103 T23: -0.0406 REMARK 3 L TENSOR REMARK 3 L11: 10.8096 L22: 16.3485 REMARK 3 L33: 17.3986 L12: -2.4299 REMARK 3 L13: -0.9127 L23: -0.0608 REMARK 3 S TENSOR REMARK 3 S11: -0.2127 S12: -0.0365 S13: 0.7780 REMARK 3 S21: -0.1466 S22: 0.0485 S23: 0.5586 REMARK 3 S31: -1.2673 S32: -1.2089 S33: 0.1642 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 17 REMARK 3 ORIGIN FOR THE GROUP (A): -5.6830 40.8290 34.6910 REMARK 3 T TENSOR REMARK 3 T11: 0.0419 T22: 0.1601 REMARK 3 T33: 0.0295 T12: -0.0058 REMARK 3 T13: -0.0008 T23: 0.0232 REMARK 3 L TENSOR REMARK 3 L11: 5.3048 L22: 11.8617 REMARK 3 L33: 7.0352 L12: 0.7384 REMARK 3 L13: 0.4067 L23: 4.4984 REMARK 3 S TENSOR REMARK 3 S11: -0.0032 S12: -0.6159 S13: -0.1675 REMARK 3 S21: 0.5198 S22: -0.1247 S23: -0.2914 REMARK 3 S31: 0.4767 S32: 0.1398 S33: 0.1279 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 18 B 25 REMARK 3 ORIGIN FOR THE GROUP (A): -17.2470 44.0380 38.2500 REMARK 3 T TENSOR REMARK 3 T11: 0.1087 T22: 0.4473 REMARK 3 T33: 0.0858 T12: -0.0846 REMARK 3 T13: 0.0329 T23: -0.1242 REMARK 3 L TENSOR REMARK 3 L11: 10.3637 L22: 6.9517 REMARK 3 L33: 8.4808 L12: 0.1454 REMARK 3 L13: 4.9184 L23: -2.0355 REMARK 3 S TENSOR REMARK 3 S11: 0.1862 S12: -1.4896 S13: 0.4002 REMARK 3 S21: 0.5977 S22: -0.1592 S23: 0.4929 REMARK 3 S31: 0.1454 S32: -0.4794 S33: -0.0270 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 26 B 68 REMARK 3 ORIGIN FOR THE GROUP (A): -12.3240 41.4270 28.2060 REMARK 3 T TENSOR REMARK 3 T11: 0.0414 T22: 0.1071 REMARK 3 T33: 0.0070 T12: -0.0099 REMARK 3 T13: 0.0040 T23: -0.0137 REMARK 3 L TENSOR REMARK 3 L11: 5.0802 L22: 3.4121 REMARK 3 L33: 1.7252 L12: 3.3463 REMARK 3 L13: -0.3267 L23: -0.8246 REMARK 3 S TENSOR REMARK 3 S11: 0.0191 S12: -0.3317 S13: -0.0101 REMARK 3 S21: 0.0316 S22: -0.0608 S23: 0.0281 REMARK 3 S31: -0.0015 S32: -0.1765 S33: 0.0418 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 69 B 78 REMARK 3 ORIGIN FOR THE GROUP (A): 2.5270 51.8220 25.2610 REMARK 3 T TENSOR REMARK 3 T11: 0.1099 T22: 0.1156 REMARK 3 T33: 0.0573 T12: -0.0569 REMARK 3 T13: 0.0301 T23: -0.0290 REMARK 3 L TENSOR REMARK 3 L11: 6.1342 L22: 14.1030 REMARK 3 L33: 5.8328 L12: -0.8438 REMARK 3 L13: -0.5449 L23: -5.4486 REMARK 3 S TENSOR REMARK 3 S11: -0.0347 S12: 0.0357 S13: 0.0589 REMARK 3 S21: -0.3480 S22: -0.0871 S23: -0.7284 REMARK 3 S31: -0.4049 S32: 0.5675 S33: 0.1218 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 79 B 85 REMARK 3 ORIGIN FOR THE GROUP (A): 2.8300 44.5730 34.6560 REMARK 3 T TENSOR REMARK 3 T11: 0.0765 T22: 0.1435 REMARK 3 T33: 0.0989 T12: 0.0358 REMARK 3 T13: 0.0081 T23: -0.0076 REMARK 3 L TENSOR REMARK 3 L11: 14.7733 L22: 13.8910 REMARK 3 L33: 15.9070 L12: -2.6636 REMARK 3 L13: -1.4351 L23: 1.2990 REMARK 3 S TENSOR REMARK 3 S11: 0.0192 S12: 0.1217 S13: -0.2412 REMARK 3 S21: -0.0173 S22: -0.1787 S23: -0.8120 REMARK 3 S31: 0.5544 S32: 1.2919 S33: 0.1594 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B REMARK 3 FACTORS.ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U FACTORS. REMARK 4 REMARK 4 2XCJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-APR-10. REMARK 100 THE DEPOSITION ID IS D_1290043695. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-MAR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32402 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 35.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 0.67000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX AUTOSOL REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: STRUCTURE WAS SOLVED USING SAD ON A SELENOMETHIONINE REMARK 200 LABELED ISOMORPHUS CRYSTAL. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3.9M NA-FORMATE, 0.1M TRIS PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.83600 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 26.91800 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 26.91800 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 53.83600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLN A 86 REMARK 465 ASN A 87 REMARK 465 GLU A 88 REMARK 465 THR A 89 REMARK 465 THR A 90 REMARK 465 SER A 91 REMARK 465 PRO A 92 REMARK 465 HIS A 93 REMARK 465 SER A 94 REMARK 465 GLY A 95 REMARK 465 GLN A 96 REMARK 465 LYS A 97 REMARK 465 THR A 98 REMARK 465 GLY A 99 REMARK 465 MET B 1 REMARK 465 GLN B 86 REMARK 465 ASN B 87 REMARK 465 GLU B 88 REMARK 465 THR B 89 REMARK 465 THR B 90 REMARK 465 SER B 91 REMARK 465 PRO B 92 REMARK 465 HIS B 93 REMARK 465 SER B 94 REMARK 465 GLY B 95 REMARK 465 GLN B 96 REMARK 465 LYS B 97 REMARK 465 THR B 98 REMARK 465 GLY B 99 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2015 O HOH A 2016 1.96 REMARK 500 ND2 ASN B 51 O HOH B 2080 2.05 REMARK 500 OD1 ASN B 51 O HOH B 2079 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2041 O HOH A 2044 2664 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 73 CG GLU A 73 CD 0.112 REMARK 500 GLU A 73 CD GLU A 73 OE1 0.087 REMARK 500 GLU A 73 CD GLU A 73 OE2 0.098 REMARK 500 GLU B 73 CG GLU B 73 CD 0.105 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 20 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG B 20 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG B 20 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 71 77.58 -154.28 REMARK 500 ALA B 71 72.48 -155.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2012 DISTANCE = 6.37 ANGSTROMS REMARK 525 HOH A2022 DISTANCE = 6.58 ANGSTROMS REMARK 525 HOH A2024 DISTANCE = 5.99 ANGSTROMS REMARK 525 HOH B2025 DISTANCE = 5.94 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1086 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 17 O REMARK 620 2 GLN A 22 OE1 97.2 REMARK 620 3 HOH A2032 O 86.6 176.2 REMARK 620 4 HOH A2040 O 163.0 85.4 90.8 REMARK 620 5 HOH A2041 O 78.0 92.0 88.4 85.1 REMARK 620 6 HOH A2043 O 103.3 88.4 91.1 93.5 178.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B1089 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR B 17 O REMARK 620 2 GLN B 22 OE1 98.1 REMARK 620 3 HOH B2020 O 140.4 100.5 REMARK 620 4 HOH B2033 O 82.5 177.5 77.7 REMARK 620 5 HOH B2036 O 101.2 94.0 111.9 88.3 REMARK 620 6 HOH B2043 O 71.9 90.0 73.5 87.9 172.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1086 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1087 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT B 1088 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1086 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 1089 DBREF 2XCJ A 1 99 UNP Q83VS7 Q83VS7_BPP2 1 99 DBREF 2XCJ B 1 99 UNP Q83VS7 Q83VS7_BPP2 1 99 SEQRES 1 A 99 MET SER ASN THR ILE SER GLU LYS ILE VAL LEU MET ARG SEQRES 2 A 99 LYS SER GLU TYR LEU SER ARG GLN GLN LEU ALA ASP LEU SEQRES 3 A 99 THR GLY VAL PRO TYR GLY THR LEU SER TYR TYR GLU SER SEQRES 4 A 99 GLY ARG SER THR PRO PRO THR ASP VAL MET MET ASN ILE SEQRES 5 A 99 LEU GLN THR PRO GLN PHE THR LYS TYR THR LEU TRP PHE SEQRES 6 A 99 MET THR ASN GLN ILE ALA PRO GLU SER GLY GLN ILE ALA SEQRES 7 A 99 PRO ALA LEU ALA HIS PHE GLY GLN ASN GLU THR THR SER SEQRES 8 A 99 PRO HIS SER GLY GLN LYS THR GLY SEQRES 1 B 99 MET SER ASN THR ILE SER GLU LYS ILE VAL LEU MET ARG SEQRES 2 B 99 LYS SER GLU TYR LEU SER ARG GLN GLN LEU ALA ASP LEU SEQRES 3 B 99 THR GLY VAL PRO TYR GLY THR LEU SER TYR TYR GLU SER SEQRES 4 B 99 GLY ARG SER THR PRO PRO THR ASP VAL MET MET ASN ILE SEQRES 5 B 99 LEU GLN THR PRO GLN PHE THR LYS TYR THR LEU TRP PHE SEQRES 6 B 99 MET THR ASN GLN ILE ALA PRO GLU SER GLY GLN ILE ALA SEQRES 7 B 99 PRO ALA LEU ALA HIS PHE GLY GLN ASN GLU THR THR SER SEQRES 8 B 99 PRO HIS SER GLY GLN LYS THR GLY HET NA A1086 1 HET GOL B1086 6 HET GOL B1087 6 HET FMT B1088 3 HET NA B1089 1 HETNAM NA SODIUM ION HETNAM GOL GLYCEROL HETNAM FMT FORMIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 NA 2(NA 1+) FORMUL 4 GOL 2(C3 H8 O3) FORMUL 6 FMT C H2 O2 FORMUL 8 HOH *210(H2 O) HELIX 1 1 THR A 4 GLU A 16 1 13 HELIX 2 2 SER A 19 GLY A 28 1 10 HELIX 3 3 PRO A 30 SER A 39 1 10 HELIX 4 4 PRO A 45 THR A 55 1 11 HELIX 5 5 PRO A 56 LYS A 60 5 5 HELIX 6 6 TYR A 61 ASN A 68 1 8 HELIX 7 7 PRO A 72 GLY A 75 5 4 HELIX 8 8 PRO A 79 HIS A 83 5 5 HELIX 9 9 THR B 4 GLU B 16 1 13 HELIX 10 10 SER B 19 GLY B 28 1 10 HELIX 11 11 PRO B 30 GLY B 40 1 11 HELIX 12 12 PRO B 45 GLN B 54 1 10 HELIX 13 13 THR B 55 LYS B 60 5 6 HELIX 14 14 TYR B 61 ASN B 68 1 8 HELIX 15 15 PRO B 72 GLY B 75 5 4 HELIX 16 16 PRO B 79 HIS B 83 5 5 LINK O TYR A 17 NA NA A1086 1555 1555 2.41 LINK OE1 GLN A 22 NA NA A1086 1555 1555 2.51 LINK NA NA A1086 O HOH A2032 1555 1555 2.43 LINK NA NA A1086 O HOH A2040 1555 1555 2.48 LINK NA NA A1086 O HOH A2041 1555 1555 2.58 LINK NA NA A1086 O HOH A2043 1555 1555 2.31 LINK O TYR B 17 NA NA B1089 1555 1555 2.57 LINK OE1 GLN B 22 NA NA B1089 1555 1555 2.43 LINK NA NA B1089 O HOH B2020 1555 1555 2.40 LINK NA NA B1089 O HOH B2033 1555 1555 2.31 LINK NA NA B1089 O HOH B2036 1555 1555 2.55 LINK NA NA B1089 O HOH B2043 1555 1555 2.72 SITE 1 AC1 9 SER A 42 THR A 43 SER B 35 TYR B 36 SITE 2 AC1 9 SER B 39 ARG B 41 HOH B2060 HOH B2110 SITE 3 AC1 9 HOH B2111 SITE 1 AC2 9 THR B 27 GLY B 28 VAL B 29 PRO B 30 SITE 2 AC2 9 ASN B 51 HOH B2053 HOH B2112 HOH B2113 SITE 3 AC2 9 HOH B2114 SITE 1 AC3 2 HOH A2063 ARG B 41 SITE 1 AC4 6 TYR A 17 GLN A 22 HOH A2032 HOH A2040 SITE 2 AC4 6 HOH A2041 HOH A2043 SITE 1 AC5 6 TYR B 17 GLN B 22 HOH B2020 HOH B2033 SITE 2 AC5 6 HOH B2036 HOH B2043 CRYST1 91.103 91.103 80.754 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010977 0.006337 0.000000 0.00000 SCALE2 0.000000 0.012675 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012383 0.00000