HEADER DNA BINDING PROTEIN/DNA 10-MAY-10 2XE0 TITLE MOLECULAR BASIS OF ENGINEERED MEGANUCLEASE TARGETING OF THE ENDOGENOUS TITLE 2 HUMAN RAG1 LOCUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: I-CREI V2V3 VARIANT; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: I-CREI V2V3 VARIANT; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: 24MER DNA; COMPND 11 CHAIN: C; COMPND 12 SYNONYM: 5'-D(*TP*TP*GP*TP*TP*CP*TP*CP*AP*GP*GP*TP COMPND 13 *AP*CP*CP*TP*CP*AP*GP*CP*CP*AP*GP*A)-3'; COMPND 14 ENGINEERED: YES; COMPND 15 MOL_ID: 4; COMPND 16 MOLECULE: 24MER DNA; COMPND 17 CHAIN: D; COMPND 18 SYNONYM: 5'-D(*TP*CP*TP*GP*GP*CP*TP*GP*AP*GP*GP*TP*AP*CP COMPND 19 CP*TP*GP*AP*GP*AP*AP*CP*AP*A)-3'; COMPND 20 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CHLAMYDOMONAS REINHARDTII; SOURCE 3 ORGANISM_TAXID: 3055; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: PET24D; SOURCE 7 EXPRESSION_SYSTEM_VECTOR: CDFDUET1; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: CHLAMYDOMONAS REINHARDTII; SOURCE 10 ORGANISM_TAXID: 3055; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 13 EXPRESSION_SYSTEM_STRAIN: PET24D; SOURCE 14 EXPRESSION_SYSTEM_VECTOR: CDFDUET1; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 18 ORGANISM_COMMON: HUMAN; SOURCE 19 ORGANISM_TAXID: 9606; SOURCE 20 MOL_ID: 4; SOURCE 21 SYNTHETIC: YES; SOURCE 22 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 23 ORGANISM_COMMON: HUMAN; SOURCE 24 ORGANISM_TAXID: 9606 KEYWDS DNA BINDING PROTEIN-DNA COMPLEX, HOMING ENDONUCLEASES, DOUBLE-STRAND KEYWDS 2 BREAK, HOMOLOGOUS RECOMBINATION, HUMAN RAG1 GENE, SEVERE COMBINED KEYWDS 3 IMMUNODEFICIENCY (SCID), DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR I.G.MUNOZ,J.PRIETO,S.SUBRAMANIAN,J.COLOMA,P.REDONDO,M.VILLATE, AUTHOR 2 N.MERINO,M.MARENCHINO,M.D'ABRAMO,F.L.GERVASIO,S.GRIZOT,F.DABOUSSI, AUTHOR 3 J.SMITH,I.CHION-SOTINE,F.PAQUES,P.DUCHATEAU,A.ALIBES,F.STRICHER, AUTHOR 4 L.SERRANO,F.J.BLANCO,G.MONTOYA REVDAT 3 20-DEC-23 2XE0 1 JRNL REMARK LINK REVDAT 2 02-FEB-11 2XE0 1 JRNL REMARK REVDAT 1 29-SEP-10 2XE0 0 JRNL AUTH I.G.MUNOZ,J.PRIETO,S.SUBRAMANIAN,J.COLOMA,P.REDONDO, JRNL AUTH 2 M.VILLATE,N.MERINO,M.MARENCHINO,M.D'ABRAMO,F.L.GERVASIO, JRNL AUTH 3 S.GRIZOT,F.DABOUSSI,J.SMITH,I.CHION-SOTINE,F.PAQUES, JRNL AUTH 4 P.DUCHATEAU,A.ALIBES,F.STRICHER,L.SERRANO,F.J.BLANCO, JRNL AUTH 5 G.MONTOYA JRNL TITL MOLECULAR BASIS OF ENGINEERED MEGANUCLEASE TARGETING OF THE JRNL TITL 2 ENDOGENOUS HUMAN RAG1 LOCUS JRNL REF NUCLEIC ACIDS RES. V. 39 729 2011 JRNL REFN ISSN 0305-1048 JRNL PMID 20846960 JRNL DOI 10.1093/NAR/GKQ801 REMARK 2 REMARK 2 RESOLUTION. 2.31 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.31 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.77 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 3 NUMBER OF REFLECTIONS : 24762 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1239 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.7733 - 4.8018 0.98 2896 144 0.2055 0.2275 REMARK 3 2 4.8018 - 3.8127 1.00 2765 162 0.1689 0.2207 REMARK 3 3 3.8127 - 3.3311 0.99 2741 154 0.1951 0.2721 REMARK 3 4 3.3311 - 3.0267 0.99 2688 152 0.2103 0.2455 REMARK 3 5 3.0267 - 2.8099 0.99 2691 151 0.2235 0.2623 REMARK 3 6 2.8099 - 2.6443 0.98 2689 128 0.2433 0.3130 REMARK 3 7 2.6443 - 2.5119 0.96 2625 128 0.2534 0.3569 REMARK 3 8 2.5119 - 2.4026 0.89 2392 117 0.2680 0.3132 REMARK 3 9 2.4026 - 2.3101 0.75 2036 103 0.2953 0.3199 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.35 REMARK 3 B_SOL : 48.69 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.010 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 49.04 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3563 REMARK 3 ANGLE : 1.309 5025 REMARK 3 CHIRALITY : 0.068 579 REMARK 3 PLANARITY : 0.004 472 REMARK 3 DIHEDRAL : 22.934 1352 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2XE0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-MAY-10. REMARK 100 THE DEPOSITION ID IS D_1290043879. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24763 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.310 REMARK 200 RESOLUTION RANGE LOW (A) : 35.760 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 74.4 REMARK 200 DATA REDUNDANCY : 2.700 REMARK 200 R MERGE (I) : 0.44000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 1.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 35.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.30 REMARK 200 R MERGE FOR SHELL (I) : 0.06000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 12.10 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1G9Z REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 88.92850 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.76900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 88.92850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.76900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -97.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -44.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 38 N7 DG D 604 1.08 REMARK 500 NH2 ARG A 40 O6 DG D 605 1.30 REMARK 500 NH1 ARG A 38 O6 DG D 604 1.43 REMARK 500 O HOH C 2006 O HOH D 2009 1.89 REMARK 500 OD1 ASP B 130 NH2 ARG B 141 1.91 REMARK 500 OH TYR B 66 OP1 DT C 505 1.98 REMARK 500 NE ARG A 40 O HOH A 2005 1.99 REMARK 500 O ALA A 134 OXT ACT A 1154 2.00 REMARK 500 O GLU A 124 OG1 THR A 127 2.03 REMARK 500 NH2 ARG B 30 O6 DG C 503 2.05 REMARK 500 OG1 THR B 143 O HOH B 2012 2.12 REMARK 500 NH2 ARG A 38 C5 DG D 604 2.17 REMARK 500 NH2 ARG A 38 C8 DG D 604 2.18 REMARK 500 NH2 ARG A 40 C6 DG D 605 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS B 126 CB CYS B 126 SG -0.103 REMARK 500 DC C 515 P DC C 515 OP3 -0.142 REMARK 500 DC D 615 P DC D 615 OP3 -0.154 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DA C 509 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 DA C 513 O4' - C1' - N9 ANGL. DEV. = -5.2 DEGREES REMARK 500 DG C 519 O4' - C1' - N9 ANGL. DEV. = 2.9 DEGREES REMARK 500 DT D 601 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DA D 609 C3' - C2' - C1' ANGL. DEV. = -5.7 DEGREES REMARK 500 DG D 611 O4' - C1' - N9 ANGL. DEV. = 3.4 DEGREES REMARK 500 DT D 612 N3 - C4 - O4 ANGL. DEV. = 3.7 DEGREES REMARK 500 DA D 613 O4' - C1' - N9 ANGL. DEV. = -6.5 DEGREES REMARK 500 DG D 617 C5 - C6 - O6 ANGL. DEV. = -3.7 DEGREES REMARK 500 DA D 621 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 36 2.46 82.31 REMARK 500 SER A 118 135.17 147.59 REMARK 500 LYS A 142 -51.94 -121.88 REMARK 500 ALA B 36 0.80 82.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C1525 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 19 O REMARK 620 2 HOH A2002 O 92.6 REMARK 620 3 ASP B 20 OD1 82.9 124.6 REMARK 620 4 ASP B 20 OD2 95.7 79.0 47.1 REMARK 620 5 DC C 515 OP3 80.1 158.2 75.2 122.0 REMARK 620 6 DC C 515 OP1 91.3 102.8 132.4 172.6 57.3 REMARK 620 7 DC D 614 OP1 177.3 84.7 98.9 84.0 102.3 89.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C1526 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 20 OD1 REMARK 620 2 ASP B 20 OD1 102.4 REMARK 620 3 DC C 514 O3' 84.2 146.0 REMARK 620 4 DC C 515 OP3 107.3 90.6 55.9 REMARK 620 5 DC D 614 O3' 149.9 84.7 106.4 101.9 REMARK 620 6 DC D 615 OP3 99.9 110.1 101.3 141.3 50.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG D1625 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 20 OD1 REMARK 620 2 ASP A 20 OD2 45.1 REMARK 620 3 GLY B 19 O 80.0 98.7 REMARK 620 4 HOH B2001 O 132.4 89.9 95.8 REMARK 620 5 DC C 514 OP1 94.1 73.2 171.9 84.1 REMARK 620 6 DC D 615 OP3 70.9 113.6 83.6 156.4 99.7 REMARK 620 7 DC D 615 OP1 130.4 162.2 96.7 97.3 91.2 59.5 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG D 1625 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG C 1525 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG C 1526 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 1154 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGO B 1155 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 1154 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 1156 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 1155 REMARK 999 REMARK 999 SEQUENCE REMARK 999 AUTHOR MENTIONED MUTATIONS TO THE CRYSTALLIZED SEQUENCE REMARK 999 AT THE FOLLOWING POSITIONS V2 N30R,Y33N,Q44A,R68Y,R70S, REMARK 999 I77R V3 K28N,Y33S,Q38R,S40R,Q44Y,R70S,D75Q,I77V DBREF 2XE0 A 2 153 PDB 2XE0 2XE0 2 153 DBREF 2XE0 B 2 153 PDB 2XE0 2XE0 2 153 DBREF 2XE0 C 501 524 PDB 2XE0 2XE0 501 524 DBREF 2XE0 D 601 624 PDB 2XE0 2XE0 601 624 SEQRES 1 A 152 ASN THR LYS TYR ASN LYS GLU PHE LEU LEU TYR LEU ALA SEQRES 2 A 152 GLY PHE VAL ASP GLY ASP GLY SER ILE ILE ALA GLN ILE SEQRES 3 A 152 ASN PRO ASN ALA SER SER LYS PHE LYS HIS ARG LEU ARG SEQRES 4 A 152 LEU THR PHE TYR VAL THR GLN LYS THR GLN ARG ARG TRP SEQRES 5 A 152 PHE LEU ASP LYS LEU VAL ASP GLU ILE GLY VAL GLY TYR SEQRES 6 A 152 VAL ARG ASP SER GLY SER VAL SER GLN TYR VAL LEU SER SEQRES 7 A 152 GLU ILE ALA PRO LEU HIS ASN PHE LEU THR GLN LEU GLN SEQRES 8 A 152 PRO PHE LEU LYS LEU LYS GLN LYS GLN ALA ASN LEU VAL SEQRES 9 A 152 LEU LYS ILE ILE GLU GLN LEU PRO SER ALA LYS ALA SER SEQRES 10 A 152 PRO ALA ALA PHE LEU GLU VAL CYS THR TRP VAL ASP GLN SEQRES 11 A 152 ILE ALA ALA LEU ASN ASP SER ALA THR ARG LYS THR THR SEQRES 12 A 152 SER GLU THR VAL ALA ALA VAL LEU ASP SEQRES 1 B 152 ASN THR LYS TYR ASN LYS GLU PHE LEU LEU TYR LEU ALA SEQRES 2 B 152 GLY PHE VAL ASP GLY ASP GLY SER ILE ILE ALA GLN ILE SEQRES 3 B 152 LYS PRO ARG ALA SER ASN LYS PHE ALA HIS GLN LEU SER SEQRES 4 B 152 LEU THR PHE ALA VAL THR GLN LYS THR GLN ARG ARG TRP SEQRES 5 B 152 PHE LEU ASP LYS LEU VAL ASP GLU ILE GLY VAL GLY TYR SEQRES 6 B 152 VAL TYR ASP SER GLY SER VAL SER ASP TYR ARG LEU SER SEQRES 7 B 152 GLU ILE LYS PRO LEU HIS ASN PHE LEU THR GLN LEU GLN SEQRES 8 B 152 PRO PHE LEU LYS LEU LYS GLN LYS GLN ALA ASN LEU VAL SEQRES 9 B 152 LEU ALA ILE ILE GLU GLN LEU PRO SER ALA LYS ALA SER SEQRES 10 B 152 PRO ASP ALA PHE LEU GLU VAL CYS THR TRP VAL ASP GLN SEQRES 11 B 152 ILE ALA ALA LEU ASN ASP SER LYS THR ARG ALA THR THR SEQRES 12 B 152 SER ALA THR VAL ARG ALA ALA LEU ASP SEQRES 1 C 24 DT DT DG DT DT DC DT DC DA DG DG DT DA SEQRES 2 C 24 DC DC DT DC DA DG DC DC DA DG DA SEQRES 1 D 24 DT DC DT DG DG DC DT DG DA DG DG DT DA SEQRES 2 D 24 DC DC DT DG DA DG DA DA DC DA DA HET ACT A1154 4 HET ACT A1155 4 HET ACT B1154 4 HET PGO B1155 5 HET ACT B1156 4 HET MG C1525 1 HET MG C1526 1 HET MG D1625 1 HETNAM ACT ACETATE ION HETNAM PGO S-1,2-PROPANEDIOL HETNAM MG MAGNESIUM ION FORMUL 5 ACT 4(C2 H3 O2 1-) FORMUL 8 PGO C3 H8 O2 FORMUL 10 MG 3(MG 2+) FORMUL 13 HOH *63(H2 O) HELIX 1 1 ASN A 6 ASP A 20 1 15 HELIX 2 2 ARG A 51 GLY A 63 1 13 HELIX 3 3 GLU A 80 GLN A 92 1 13 HELIX 4 4 LYS A 98 GLN A 111 1 14 HELIX 5 5 GLN A 111 ALA A 117 1 7 HELIX 6 6 SER A 118 ASN A 136 1 19 HELIX 7 7 GLU A 146 ALA A 150 5 5 HELIX 8 8 ASN B 6 ASP B 20 1 15 HELIX 9 9 ARG B 51 GLY B 63 1 13 HELIX 10 10 GLU B 80 GLN B 92 1 13 HELIX 11 11 PRO B 93 LEU B 95 5 3 HELIX 12 12 LYS B 98 GLN B 111 1 14 HELIX 13 13 GLN B 111 SER B 118 1 8 HELIX 14 14 SER B 118 ASN B 136 1 19 HELIX 15 15 THR B 144 ARG B 149 1 6 SHEET 1 AA 4 GLY A 21 PRO A 29 0 SHEET 2 AA 4 HIS A 37 LYS A 48 -1 O ARG A 38 N ASN A 28 SHEET 3 AA 4 VAL A 73 LEU A 78 -1 O SER A 74 N GLN A 47 SHEET 4 AA 4 TYR A 66 SER A 70 -1 O TYR A 66 N VAL A 77 SHEET 1 BA 4 GLY B 21 PRO B 29 0 SHEET 2 BA 4 HIS B 37 LYS B 48 -1 O GLN B 38 N LYS B 28 SHEET 3 BA 4 VAL B 73 LEU B 78 -1 O SER B 74 N GLN B 47 SHEET 4 BA 4 TYR B 66 SER B 70 -1 O TYR B 66 N ARG B 77 LINK O GLY A 19 MG MG C1525 1555 1555 2.36 LINK OD1 ASP A 20 MG MG C1526 1555 1555 2.14 LINK OD1 ASP A 20 MG MG D1625 1555 1555 2.97 LINK OD2 ASP A 20 MG MG D1625 1555 1555 2.25 LINK O HOH A2002 MG MG C1525 1555 1555 2.40 LINK O GLY B 19 MG MG D1625 1555 1555 2.19 LINK OD1 ASP B 20 MG MG C1525 1555 1555 2.81 LINK OD2 ASP B 20 MG MG C1525 1555 1555 2.45 LINK OD1 ASP B 20 MG MG C1526 1555 1555 2.40 LINK O HOH B2001 MG MG D1625 1555 1555 2.50 LINK O3' DC C 514 MG MG C1526 1555 1555 2.84 LINK OP1 DC C 514 MG MG D1625 1555 1555 2.33 LINK OP3 DC C 515 MG MG C1525 1555 1555 2.43 LINK OP1 DC C 515 MG MG C1525 1555 1555 2.54 LINK OP3 DC C 515 MG MG C1526 1555 1555 2.12 LINK MG MG C1525 OP1 DC D 614 1555 1555 2.28 LINK MG MG C1526 O3' DC D 614 1555 1555 2.81 LINK MG MG C1526 OP3 DC D 615 1555 1555 2.09 LINK OP3 DC D 615 MG MG D1625 1555 1555 2.58 LINK OP1 DC D 615 MG MG D1625 1555 1555 2.33 SITE 1 AC1 6 ASP A 20 GLY B 19 HOH B2001 DC C 514 SITE 2 AC1 6 MG C1526 DC D 615 SITE 1 AC2 6 GLY A 19 HOH A2002 ASP B 20 DC C 515 SITE 2 AC2 6 MG C1526 DC D 614 SITE 1 AC3 10 GLY A 19 ASP A 20 GLY B 19 ASP B 20 SITE 2 AC3 10 DC C 514 DC C 515 MG C1525 DC D 614 SITE 3 AC3 10 DC D 615 MG D1625 SITE 1 AC4 4 LYS A 96 PHE B 54 LYS B 57 GLU B 61 SITE 1 AC5 5 ARG A 51 LEU B 97 LYS B 98 DC D 615 SITE 2 AC5 5 DT D 616 SITE 1 AC6 4 ALA A 134 ASN A 136 ASP A 137 GLN B 50 SITE 1 AC7 3 GLN A 50 ALA B 134 ASN B 136 SITE 1 AC8 4 LYS A 98 ARG B 51 DC C 515 DT C 516 CRYST1 177.857 71.538 45.005 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005622 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013979 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022220 0.00000