data_2XEN # _entry.id 2XEN # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2XEN PDBE EBI-43944 WWPDB D_1290043944 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 2XEH unspecified 'STRUCTURAL DETERMINANTS FOR IMPROVED THERMAL STABILITY OF DESIGNED ANKYRIN REPEAT PROTEINS WITH A REDESIGNED C-CAPPING MODULE.' PDB 2XEE unspecified 'STRUCTURAL DETERMINANTS FOR IMPROVED THERMAL STABILITY OF DESIGNED ANKYRIN REPEAT PROTEINS WITH A REDESIGNED C-CAPPING MODULE.' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2XEN _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2010-05-17 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kramer, M.' 1 'Wetzel, S.K.' 2 'Pluckthun, A.' 3 'Mittl, P.' 4 'Grutter, M.' 5 # _citation.id primary _citation.title 'Structural Determinants for Improved Thermal Stability of Designed Ankyrin Repeat Proteins with a Redesigned C-Capping Module.' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 404 _citation.page_first 381 _citation.page_last ? _citation.year 2010 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20851127 _citation.pdbx_database_id_DOI 10.1016/J.JMB.2010.09.023 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Kramer, M.' 1 primary 'Wetzel, S.K.' 2 primary 'Pluckthun, A.' 3 primary 'Mittl, P.' 4 primary 'Grutter, M.' 5 # _cell.entry_id 2XEN _cell.length_a 77.150 _cell.length_b 35.330 _cell.length_c 32.400 _cell.angle_alpha 90.00 _cell.angle_beta 114.43 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2XEN _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'NI1C MUT4' 9727.865 1 ? ? ? ? 2 non-polymer syn 1,2-ETHANEDIOL 62.068 1 ? ? ? ? 3 non-polymer syn METHANOL 32.042 1 ? ? ? ? 4 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 5 water nat water 18.015 47 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;DLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGN EDLAEILQKAA ; _entity_poly.pdbx_seq_one_letter_code_can ;DLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGN EDLAEILQKAA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASP n 1 2 LEU n 1 3 GLY n 1 4 LYS n 1 5 LYS n 1 6 LEU n 1 7 LEU n 1 8 GLU n 1 9 ALA n 1 10 ALA n 1 11 ARG n 1 12 ALA n 1 13 GLY n 1 14 GLN n 1 15 ASP n 1 16 ASP n 1 17 GLU n 1 18 VAL n 1 19 ARG n 1 20 ILE n 1 21 LEU n 1 22 MET n 1 23 ALA n 1 24 ASN n 1 25 GLY n 1 26 ALA n 1 27 ASP n 1 28 VAL n 1 29 ASN n 1 30 ALA n 1 31 LYS n 1 32 ASP n 1 33 LYS n 1 34 ASP n 1 35 GLY n 1 36 TYR n 1 37 THR n 1 38 PRO n 1 39 LEU n 1 40 HIS n 1 41 LEU n 1 42 ALA n 1 43 ALA n 1 44 ARG n 1 45 GLU n 1 46 GLY n 1 47 HIS n 1 48 LEU n 1 49 GLU n 1 50 ILE n 1 51 VAL n 1 52 GLU n 1 53 VAL n 1 54 LEU n 1 55 LEU n 1 56 LYS n 1 57 ALA n 1 58 GLY n 1 59 ALA n 1 60 ASP n 1 61 VAL n 1 62 ASN n 1 63 ALA n 1 64 GLN n 1 65 ASP n 1 66 LYS n 1 67 PHE n 1 68 GLY n 1 69 LYS n 1 70 THR n 1 71 ALA n 1 72 PHE n 1 73 ASP n 1 74 ILE n 1 75 SER n 1 76 ILE n 1 77 ASP n 1 78 ASN n 1 79 GLY n 1 80 ASN n 1 81 GLU n 1 82 ASP n 1 83 LEU n 1 84 ALA n 1 85 GLU n 1 86 ILE n 1 87 LEU n 1 88 GLN n 1 89 LYS n 1 90 ALA n 1 91 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'SYNTHETIC CONSTRUCT' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 32630 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 2XEN _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession 2XEN _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2XEN _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 91 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 2XEN _struct_ref_seq.db_align_beg 13 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 103 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 13 _struct_ref_seq.pdbx_auth_seq_align_end 103 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MOH non-polymer . METHANOL ? 'C H4 O' 32.042 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2XEN _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.07 _exptl_crystal.density_percent_sol 40.48 _exptl_crystal.description NONE # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SLS BEAMLINE X06SA' _diffrn_source.pdbx_synchrotron_site SLS _diffrn_source.pdbx_synchrotron_beamline X06SA _diffrn_source.pdbx_wavelength 1.0000 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2XEN _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 31.00 _reflns.d_resolution_high 2.20 _reflns.number_obs 4117 _reflns.number_all ? _reflns.percent_possible_obs 98.8 _reflns.pdbx_Rmerge_I_obs 0.06 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate 19.51 _reflns.pdbx_redundancy 6.1 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2XEN _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 4113 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.36 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 29.499 _refine.ls_d_res_high 2.200 _refine.ls_percent_reflns_obs 99.28 _refine.ls_R_factor_obs 0.1737 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1681 _refine.ls_R_factor_R_free 0.2224 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.9 _refine.ls_number_reflns_R_free 407 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 23.7 _refine.aniso_B[1][1] 13.3944 _refine.aniso_B[2][2] -6.4351 _refine.aniso_B[3][3] -6.9594 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] 9.2660 _refine.aniso_B[2][3] 0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.411 _refine.solvent_model_param_bsol 51.541 _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model NONE _refine.pdbx_method_to_determine_struct OTHER _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.37 _refine.pdbx_overall_phase_error 25.05 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 682 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 11 _refine_hist.number_atoms_solvent 47 _refine_hist.number_atoms_total 740 _refine_hist.d_res_high 2.200 _refine_hist.d_res_low 29.499 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.008 ? ? 700 'X-RAY DIFFRACTION' ? f_angle_d 0.944 ? ? 941 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 15.763 ? ? 259 'X-RAY DIFFRACTION' ? f_chiral_restr 0.060 ? ? 108 'X-RAY DIFFRACTION' ? f_plane_restr 0.003 ? ? 126 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all 'X-RAY DIFFRACTION' . 2.2005 2.5188 1231 0.1809 99.00 0.2474 . . 140 . . 'X-RAY DIFFRACTION' . 2.5188 3.1728 1215 0.1635 100.00 0.2241 . . 133 . . 'X-RAY DIFFRACTION' . 3.1728 29.5015 1260 0.1640 99.00 0.2048 . . 134 . . # _struct.entry_id 2XEN _struct.title 'Structural Determinants for Improved Thermal Stability of Designed Ankyrin Repeat Proteins With a Redesigned C-capping Module.' _struct.pdbx_descriptor 'NI1C MUT4' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2XEN _struct_keywords.pdbx_keywords 'DE NOVO PROTEIN' _struct_keywords.text 'DE NOVO PROTEIN, PROTEIN ENGINEERING, REPEAT PROTEIN, ANKYRIN, DESIGN, PROTEIN-PROTEIN INTERACTION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 1 ? ALA A 12 ? ASP A 13 ALA A 24 1 ? 12 HELX_P HELX_P2 2 GLN A 14 ? ASN A 24 ? GLN A 26 ASN A 36 1 ? 11 HELX_P HELX_P3 3 THR A 37 ? GLU A 45 ? THR A 49 GLU A 57 1 ? 9 HELX_P HELX_P4 4 HIS A 47 ? ALA A 57 ? HIS A 59 ALA A 69 1 ? 11 HELX_P HELX_P5 5 THR A 70 ? ASN A 78 ? THR A 82 ASN A 90 1 ? 9 HELX_P HELX_P6 6 ASN A 80 ? ALA A 91 ? ASN A 92 ALA A 103 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE EDO A 1104' AC2 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE MOH A 1105' AC3 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE SO4 A 1106' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 LYS A 4 ? LYS A 16 . ? 4_456 ? 2 AC1 5 HIS A 47 ? HIS A 59 . ? 1_555 ? 3 AC1 5 LEU A 48 ? LEU A 60 . ? 1_555 ? 4 AC1 5 GLU A 49 ? GLU A 61 . ? 1_555 ? 5 AC1 5 ASP A 77 ? ASP A 89 . ? 4_455 ? 6 AC2 6 TYR A 36 ? TYR A 48 . ? 1_555 ? 7 AC2 6 ASP A 65 ? ASP A 77 . ? 1_555 ? 8 AC2 6 LYS A 69 ? LYS A 81 . ? 1_555 ? 9 AC2 6 ASN A 80 ? ASN A 92 . ? 4_445 ? 10 AC2 6 ASP A 82 ? ASP A 94 . ? 4_445 ? 11 AC2 6 HOH E . ? HOH A 2040 . ? 4_445 ? 12 AC3 4 ARG A 19 ? ARG A 31 . ? 1_555 ? 13 AC3 4 LYS A 33 ? LYS A 45 . ? 1_565 ? 14 AC3 4 HOH E . ? HOH A 2026 . ? 1_555 ? 15 AC3 4 HOH E . ? HOH A 2047 . ? 1_555 ? # _database_PDB_matrix.entry_id 2XEN _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2XEN _atom_sites.fract_transf_matrix[1][1] 0.012962 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.005888 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.028305 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.033899 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASP 1 13 13 ASP ASP A . n A 1 2 LEU 2 14 14 LEU LEU A . n A 1 3 GLY 3 15 15 GLY GLY A . n A 1 4 LYS 4 16 16 LYS LYS A . n A 1 5 LYS 5 17 17 LYS LYS A . n A 1 6 LEU 6 18 18 LEU LEU A . n A 1 7 LEU 7 19 19 LEU LEU A . n A 1 8 GLU 8 20 20 GLU GLU A . n A 1 9 ALA 9 21 21 ALA ALA A . n A 1 10 ALA 10 22 22 ALA ALA A . n A 1 11 ARG 11 23 23 ARG ARG A . n A 1 12 ALA 12 24 24 ALA ALA A . n A 1 13 GLY 13 25 25 GLY GLY A . n A 1 14 GLN 14 26 26 GLN GLN A . n A 1 15 ASP 15 27 27 ASP ASP A . n A 1 16 ASP 16 28 28 ASP ASP A . n A 1 17 GLU 17 29 29 GLU GLU A . n A 1 18 VAL 18 30 30 VAL VAL A . n A 1 19 ARG 19 31 31 ARG ARG A . n A 1 20 ILE 20 32 32 ILE ILE A . n A 1 21 LEU 21 33 33 LEU LEU A . n A 1 22 MET 22 34 34 MET MET A . n A 1 23 ALA 23 35 35 ALA ALA A . n A 1 24 ASN 24 36 36 ASN ASN A . n A 1 25 GLY 25 37 37 GLY GLY A . n A 1 26 ALA 26 38 38 ALA ALA A . n A 1 27 ASP 27 39 39 ASP ASP A . n A 1 28 VAL 28 40 40 VAL VAL A . n A 1 29 ASN 29 41 41 ASN ASN A . n A 1 30 ALA 30 42 42 ALA ALA A . n A 1 31 LYS 31 43 43 LYS LYS A . n A 1 32 ASP 32 44 44 ASP ASP A . n A 1 33 LYS 33 45 45 LYS LYS A . n A 1 34 ASP 34 46 46 ASP ASP A . n A 1 35 GLY 35 47 47 GLY GLY A . n A 1 36 TYR 36 48 48 TYR TYR A . n A 1 37 THR 37 49 49 THR THR A . n A 1 38 PRO 38 50 50 PRO PRO A . n A 1 39 LEU 39 51 51 LEU LEU A . n A 1 40 HIS 40 52 52 HIS HIS A . n A 1 41 LEU 41 53 53 LEU LEU A . n A 1 42 ALA 42 54 54 ALA ALA A . n A 1 43 ALA 43 55 55 ALA ALA A . n A 1 44 ARG 44 56 56 ARG ARG A . n A 1 45 GLU 45 57 57 GLU GLU A . n A 1 46 GLY 46 58 58 GLY GLY A . n A 1 47 HIS 47 59 59 HIS HIS A . n A 1 48 LEU 48 60 60 LEU LEU A . n A 1 49 GLU 49 61 61 GLU GLU A . n A 1 50 ILE 50 62 62 ILE ILE A . n A 1 51 VAL 51 63 63 VAL VAL A . n A 1 52 GLU 52 64 64 GLU GLU A . n A 1 53 VAL 53 65 65 VAL VAL A . n A 1 54 LEU 54 66 66 LEU LEU A . n A 1 55 LEU 55 67 67 LEU LEU A . n A 1 56 LYS 56 68 68 LYS LYS A . n A 1 57 ALA 57 69 69 ALA ALA A . n A 1 58 GLY 58 70 70 GLY GLY A . n A 1 59 ALA 59 71 71 ALA ALA A . n A 1 60 ASP 60 72 72 ASP ASP A . n A 1 61 VAL 61 73 73 VAL VAL A . n A 1 62 ASN 62 74 74 ASN ASN A . n A 1 63 ALA 63 75 75 ALA ALA A . n A 1 64 GLN 64 76 76 GLN GLN A . n A 1 65 ASP 65 77 77 ASP ASP A . n A 1 66 LYS 66 78 78 LYS LYS A . n A 1 67 PHE 67 79 79 PHE PHE A . n A 1 68 GLY 68 80 80 GLY GLY A . n A 1 69 LYS 69 81 81 LYS LYS A . n A 1 70 THR 70 82 82 THR THR A . n A 1 71 ALA 71 83 83 ALA ALA A . n A 1 72 PHE 72 84 84 PHE PHE A . n A 1 73 ASP 73 85 85 ASP ASP A . n A 1 74 ILE 74 86 86 ILE ILE A . n A 1 75 SER 75 87 87 SER SER A . n A 1 76 ILE 76 88 88 ILE ILE A . n A 1 77 ASP 77 89 89 ASP ASP A . n A 1 78 ASN 78 90 90 ASN ASN A . n A 1 79 GLY 79 91 91 GLY GLY A . n A 1 80 ASN 80 92 92 ASN ASN A . n A 1 81 GLU 81 93 93 GLU GLU A . n A 1 82 ASP 82 94 94 ASP ASP A . n A 1 83 LEU 83 95 95 LEU LEU A . n A 1 84 ALA 84 96 96 ALA ALA A . n A 1 85 GLU 85 97 97 GLU GLU A . n A 1 86 ILE 86 98 98 ILE ILE A . n A 1 87 LEU 87 99 99 LEU LEU A . n A 1 88 GLN 88 100 100 GLN GLN A . n A 1 89 LYS 89 101 101 LYS LYS A . n A 1 90 ALA 90 102 102 ALA ALA A . n A 1 91 ALA 91 103 103 ALA ALA A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO 1 1104 1104 EDO EDO A . C 3 MOH 1 1105 1105 MOH MOH A . D 4 SO4 1 1106 1106 SO4 SO4 A . E 5 HOH 1 2001 2001 HOH HOH A . E 5 HOH 2 2002 2002 HOH HOH A . E 5 HOH 3 2003 2003 HOH HOH A . E 5 HOH 4 2004 2004 HOH HOH A . E 5 HOH 5 2005 2005 HOH HOH A . E 5 HOH 6 2006 2006 HOH HOH A . E 5 HOH 7 2007 2007 HOH HOH A . E 5 HOH 8 2008 2008 HOH HOH A . E 5 HOH 9 2009 2009 HOH HOH A . E 5 HOH 10 2010 2010 HOH HOH A . E 5 HOH 11 2011 2011 HOH HOH A . E 5 HOH 12 2012 2012 HOH HOH A . E 5 HOH 13 2013 2013 HOH HOH A . E 5 HOH 14 2014 2014 HOH HOH A . E 5 HOH 15 2015 2015 HOH HOH A . E 5 HOH 16 2016 2016 HOH HOH A . E 5 HOH 17 2017 2017 HOH HOH A . E 5 HOH 18 2018 2018 HOH HOH A . E 5 HOH 19 2019 2019 HOH HOH A . E 5 HOH 20 2020 2020 HOH HOH A . E 5 HOH 21 2021 2021 HOH HOH A . E 5 HOH 22 2022 2022 HOH HOH A . E 5 HOH 23 2023 2023 HOH HOH A . E 5 HOH 24 2024 2024 HOH HOH A . E 5 HOH 25 2025 2025 HOH HOH A . E 5 HOH 26 2026 2026 HOH HOH A . E 5 HOH 27 2027 2027 HOH HOH A . E 5 HOH 28 2028 2028 HOH HOH A . E 5 HOH 29 2029 2029 HOH HOH A . E 5 HOH 30 2030 2030 HOH HOH A . E 5 HOH 31 2031 2031 HOH HOH A . E 5 HOH 32 2032 2032 HOH HOH A . E 5 HOH 33 2033 2033 HOH HOH A . E 5 HOH 34 2034 2034 HOH HOH A . E 5 HOH 35 2035 2035 HOH HOH A . E 5 HOH 36 2036 2036 HOH HOH A . E 5 HOH 37 2037 2037 HOH HOH A . E 5 HOH 38 2038 2038 HOH HOH A . E 5 HOH 39 2039 2039 HOH HOH A . E 5 HOH 40 2040 2040 HOH HOH A . E 5 HOH 41 2041 2041 HOH HOH A . E 5 HOH 42 2042 2042 HOH HOH A . E 5 HOH 43 2043 2043 HOH HOH A . E 5 HOH 44 2044 2044 HOH HOH A . E 5 HOH 45 2045 2045 HOH HOH A . E 5 HOH 46 2046 2046 HOH HOH A . E 5 HOH 47 2047 2047 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 2028 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id E _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-08-18 2 'Structure model' 1 1 2011-05-08 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' # _software.name PHENIX _software.classification refinement _software.version '(PHENIX.REFINE)' _software.citation_id ? _software.pdbx_ordinal 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 1,2-ETHANEDIOL EDO 3 METHANOL MOH 4 'SULFATE ION' SO4 5 water HOH #