data_2XEU # _entry.id 2XEU # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.329 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2XEU PDBE EBI-43956 WWPDB D_1290043956 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2XEU _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2010-05-18 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Plechanovova, A.' 1 'McMahon, S.A.' 2 'Johnson, K.A.' 3 'Navratilova, I.' 4 'Naismith, J.H.' 5 'Hay, R.T.' 6 # _citation.id primary _citation.title 'Mechanism of Ubiquitylation by Dimeric Ring Ligase Rnf4' _citation.journal_abbrev Nat.Struct.Mol.Biol. _citation.journal_volume 18 _citation.page_first 1052 _citation.page_last ? _citation.year 2011 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1545-9993 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21857666 _citation.pdbx_database_id_DOI 10.1038/NSMB.2108 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Plechanovova, A.' 1 ? primary 'Jaffray, E.G.' 2 ? primary 'Mcmahon, S.A.' 3 ? primary 'Johnson, K.A.' 4 ? primary 'Navratilova, I.' 5 ? primary 'Naismith, J.H.' 6 ? primary 'Hay, R.T.' 7 ? # _cell.entry_id 2XEU _cell.length_a 72.616 _cell.length_b 72.616 _cell.length_c 72.616 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2XEU _symmetry.space_group_name_H-M 'P 41 3 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 213 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'RING FINGER PROTEIN 4' 7215.458 1 ? ? 'RING DOMAIN, RESIDUES 130-190' ? 2 branched man 'beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose' 342.297 1 ? ? ? ? 3 non-polymer syn 'ZINC ION' 65.409 2 ? ? ? ? 4 non-polymer syn 'SULFATE ION' 96.063 2 ? ? ? ? 5 water nat water 18.015 54 ? ? ? ? # _entity_name_com.entity_id 2 _entity_name_com.name sucrose # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GAMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYI _entity_poly.pdbx_seq_one_letter_code_can GAMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYI _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ALA n 1 3 MET n 1 4 VAL n 1 5 SER n 1 6 CYS n 1 7 PRO n 1 8 ILE n 1 9 CYS n 1 10 MET n 1 11 ASP n 1 12 GLY n 1 13 TYR n 1 14 SER n 1 15 GLU n 1 16 ILE n 1 17 VAL n 1 18 GLN n 1 19 ASN n 1 20 GLY n 1 21 ARG n 1 22 LEU n 1 23 ILE n 1 24 VAL n 1 25 SER n 1 26 THR n 1 27 GLU n 1 28 CYS n 1 29 GLY n 1 30 HIS n 1 31 VAL n 1 32 PHE n 1 33 CYS n 1 34 SER n 1 35 GLN n 1 36 CYS n 1 37 LEU n 1 38 ARG n 1 39 ASP n 1 40 SER n 1 41 LEU n 1 42 LYS n 1 43 ASN n 1 44 ALA n 1 45 ASN n 1 46 THR n 1 47 CYS n 1 48 PRO n 1 49 THR n 1 50 CYS n 1 51 ARG n 1 52 LYS n 1 53 LYS n 1 54 ILE n 1 55 ASN n 1 56 HIS n 1 57 LYS n 1 58 ARG n 1 59 TYR n 1 60 HIS n 1 61 PRO n 1 62 ILE n 1 63 TYR n 1 64 ILE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name HUMAN _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'HOMO SAPIENS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code RNF4_HUMAN _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession P78317 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2XEU _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 64 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P78317 _struct_ref_seq.db_align_beg 130 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 190 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 4 _struct_ref_seq.pdbx_auth_seq_align_end 64 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2XEU GLY A 1 ? UNP P78317 ? ? 'expression tag' 1 1 1 2XEU ALA A 2 ? UNP P78317 ? ? 'expression tag' 2 2 1 2XEU MET A 3 ? UNP P78317 ? ? 'expression tag' 3 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 FRU 'D-saccharide, beta linking' . beta-D-fructofuranose ? 'C6 H12 O6' 180.156 GLC 'D-saccharide, alpha linking' . alpha-D-glucopyranose ? 'C6 H12 O6' 180.156 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.entry_id 2XEU _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.91 _exptl_crystal.density_percent_sol 35.17 _exptl_crystal.description NONE # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.28 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID14-4' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID14-4 _diffrn_source.pdbx_wavelength 1.28 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2XEU _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 18.00 _reflns.d_resolution_high 1.50 _reflns.number_obs 10402 _reflns.number_all ? _reflns.percent_possible_obs 99.8 _reflns.pdbx_Rmerge_I_obs 0.06 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 18.00 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 9 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.50 _reflns_shell.d_res_low 1.55 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 0.43 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.90 _reflns_shell.pdbx_redundancy 7.3 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2XEU _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 10391 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 18.15 _refine.ls_d_res_high 1.50 _refine.ls_percent_reflns_obs 99.83 _refine.ls_R_factor_obs 0.16972 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.16836 _refine.ls_R_factor_R_free 0.19727 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.8 _refine.ls_number_reflns_R_free 525 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.968 _refine.correlation_coeff_Fo_to_Fc_free 0.957 _refine.B_iso_mean 21.475 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT. U VALUES WITH TLS ADDED.' _refine.pdbx_starting_model NONE _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.089 _refine.pdbx_overall_ESU_R_Free 0.072 _refine.overall_SU_ML 0.051 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 3.011 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 498 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 35 _refine_hist.number_atoms_solvent 54 _refine_hist.number_atoms_total 587 _refine_hist.d_res_high 1.50 _refine_hist.d_res_low 18.15 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.009 0.021 ? 558 'X-RAY DIFFRACTION' ? r_bond_other_d 0.001 0.020 ? 382 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.439 2.026 ? 749 'X-RAY DIFFRACTION' ? r_angle_other_deg 0.938 3.015 ? 930 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.820 5.000 ? 66 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 24.178 22.857 ? 21 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 11.322 15.000 ? 96 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 13.871 15.000 ? 4 'X-RAY DIFFRACTION' ? r_chiral_restr 0.075 0.200 ? 87 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.004 0.021 ? 571 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 102 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr 2.674 3.000 ? 3051 'X-RAY DIFFRACTION' ? r_sphericity_free 6.755 5.000 ? 54 'X-RAY DIFFRACTION' ? r_sphericity_bonded 3.955 5.000 ? 924 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.503 _refine_ls_shell.d_res_low 1.542 _refine_ls_shell.number_reflns_R_work 727 _refine_ls_shell.R_factor_R_work 0.155 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.R_factor_R_free 0.172 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 48 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 2XEU _struct.title 'Ring domain' _struct.pdbx_descriptor 'RING FINGER PROTEIN 4' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2XEU _struct_keywords.pdbx_keywords TRANSCRIPTION _struct_keywords.text 'TRANSCRIPTION, ZINC-FINGER, METAL-BINDING' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? F N N 4 ? G N N 5 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 12 ? ASN A 19 ? GLY A 12 ASN A 19 1 ? 8 HELX_P HELX_P2 2 SER A 34 ? ALA A 44 ? SER A 34 ALA A 44 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B GLC . C1 ? ? ? 1_555 B FRU . O2 ? ? B GLC 1 B FRU 2 1_555 ? ? ? ? ? ? ? 1.419 sing ? metalc1 metalc ? ? A CYS 6 SG ? ? ? 1_555 C ZN . ZN ? ? A CYS 6 A ZN 1065 1_555 ? ? ? ? ? ? ? 2.376 ? ? metalc2 metalc ? ? A CYS 9 SG ? ? ? 1_555 C ZN . ZN ? ? A CYS 9 A ZN 1065 1_555 ? ? ? ? ? ? ? 2.352 ? ? metalc3 metalc ? ? A CYS 28 SG ? ? ? 1_555 D ZN . ZN ? ? A CYS 28 A ZN 1066 1_555 ? ? ? ? ? ? ? 2.354 ? ? metalc4 metalc ? ? A HIS 30 ND1 ? ? ? 1_555 D ZN . ZN ? ? A HIS 30 A ZN 1066 1_555 ? ? ? ? ? ? ? 2.060 ? ? metalc5 metalc ? ? A CYS 33 SG ? ? ? 1_555 C ZN . ZN ? ? A CYS 33 A ZN 1065 1_555 ? ? ? ? ? ? ? 2.386 ? ? metalc6 metalc ? ? A CYS 36 SG ? ? ? 1_555 C ZN . ZN ? ? A CYS 36 A ZN 1065 1_555 ? ? ? ? ? ? ? 2.365 ? ? metalc7 metalc ? ? A CYS 47 SG ? ? ? 1_555 D ZN . ZN ? ? A CYS 47 A ZN 1066 1_555 ? ? ? ? ? ? ? 2.346 ? ? metalc8 metalc ? ? A CYS 50 SG ? ? ? 1_555 D ZN . ZN ? ? A CYS 50 A ZN 1066 1_555 ? ? ? ? ? ? ? 2.360 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # _struct_sheet.id AA _struct_sheet.type ? _struct_sheet.number_strands 3 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 VAL A 31 ? CYS A 33 ? VAL A 31 CYS A 33 AA 2 ILE A 23 ? THR A 26 ? ILE A 23 THR A 26 AA 3 TYR A 59 ? PRO A 61 ? TYR A 59 PRO A 61 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N PHE A 32 ? N PHE A 32 O VAL A 24 ? O VAL A 24 AA 2 3 N SER A 25 ? N SER A 25 O HIS A 60 ? O HIS A 60 # _database_PDB_matrix.entry_id 2XEU _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2XEU _atom_sites.fract_transf_matrix[1][1] 0.013771 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013771 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013771 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 ALA 2 2 2 ALA ALA A . n A 1 3 MET 3 3 3 MET MET A . n A 1 4 VAL 4 4 4 VAL VAL A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 CYS 6 6 6 CYS CYS A . n A 1 7 PRO 7 7 7 PRO PRO A . n A 1 8 ILE 8 8 8 ILE ILE A . n A 1 9 CYS 9 9 9 CYS CYS A . n A 1 10 MET 10 10 10 MET MET A . n A 1 11 ASP 11 11 11 ASP ASP A . n A 1 12 GLY 12 12 12 GLY GLY A . n A 1 13 TYR 13 13 13 TYR TYR A . n A 1 14 SER 14 14 14 SER SER A . n A 1 15 GLU 15 15 15 GLU GLU A . n A 1 16 ILE 16 16 16 ILE ILE A . n A 1 17 VAL 17 17 17 VAL VAL A . n A 1 18 GLN 18 18 18 GLN GLN A . n A 1 19 ASN 19 19 19 ASN ASN A . n A 1 20 GLY 20 20 20 GLY GLY A . n A 1 21 ARG 21 21 21 ARG ARG A . n A 1 22 LEU 22 22 22 LEU LEU A . n A 1 23 ILE 23 23 23 ILE ILE A . n A 1 24 VAL 24 24 24 VAL VAL A . n A 1 25 SER 25 25 25 SER SER A . n A 1 26 THR 26 26 26 THR THR A . n A 1 27 GLU 27 27 27 GLU GLU A . n A 1 28 CYS 28 28 28 CYS CYS A . n A 1 29 GLY 29 29 29 GLY GLY A . n A 1 30 HIS 30 30 30 HIS HIS A . n A 1 31 VAL 31 31 31 VAL VAL A . n A 1 32 PHE 32 32 32 PHE PHE A . n A 1 33 CYS 33 33 33 CYS CYS A . n A 1 34 SER 34 34 34 SER SER A . n A 1 35 GLN 35 35 35 GLN GLN A . n A 1 36 CYS 36 36 36 CYS CYS A . n A 1 37 LEU 37 37 37 LEU LEU A . n A 1 38 ARG 38 38 38 ARG ARG A . n A 1 39 ASP 39 39 39 ASP ASP A . n A 1 40 SER 40 40 40 SER SER A . n A 1 41 LEU 41 41 41 LEU LEU A . n A 1 42 LYS 42 42 42 LYS LYS A . n A 1 43 ASN 43 43 43 ASN ASN A . n A 1 44 ALA 44 44 44 ALA ALA A . n A 1 45 ASN 45 45 45 ASN ASN A . n A 1 46 THR 46 46 46 THR THR A . n A 1 47 CYS 47 47 47 CYS CYS A . n A 1 48 PRO 48 48 48 PRO PRO A . n A 1 49 THR 49 49 49 THR THR A . n A 1 50 CYS 50 50 50 CYS CYS A . n A 1 51 ARG 51 51 51 ARG ARG A . n A 1 52 LYS 52 52 52 LYS LYS A . n A 1 53 LYS 53 53 53 LYS LYS A . n A 1 54 ILE 54 54 54 ILE ILE A . n A 1 55 ASN 55 55 55 ASN ASN A . n A 1 56 HIS 56 56 56 HIS HIS A . n A 1 57 LYS 57 57 57 LYS LYS A . n A 1 58 ARG 58 58 58 ARG ARG A . n A 1 59 TYR 59 59 59 TYR TYR A . n A 1 60 HIS 60 60 60 HIS HIS A . n A 1 61 PRO 61 61 61 PRO PRO A . n A 1 62 ILE 62 62 62 ILE ILE A . n A 1 63 TYR 63 63 63 TYR TYR A . n A 1 64 ILE 64 64 64 ILE ILE A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN 1 1065 1065 ZN ZN A . D 3 ZN 1 1066 1066 ZN ZN A . E 4 SO4 1 1068 1068 SO4 SO4 A . F 4 SO4 1 1069 1069 SO4 SO4 A . G 5 HOH 1 2001 2001 HOH HOH A . G 5 HOH 2 2002 2002 HOH HOH A . G 5 HOH 3 2003 2003 HOH HOH A . G 5 HOH 4 2004 2004 HOH HOH A . G 5 HOH 5 2005 2005 HOH HOH A . G 5 HOH 6 2006 2006 HOH HOH A . G 5 HOH 7 2007 2007 HOH HOH A . G 5 HOH 8 2008 2008 HOH HOH A . G 5 HOH 9 2009 2009 HOH HOH A . G 5 HOH 10 2010 2010 HOH HOH A . G 5 HOH 11 2011 2011 HOH HOH A . G 5 HOH 12 2012 2012 HOH HOH A . G 5 HOH 13 2013 2013 HOH HOH A . G 5 HOH 14 2014 2014 HOH HOH A . G 5 HOH 15 2015 2015 HOH HOH A . G 5 HOH 16 2016 2016 HOH HOH A . G 5 HOH 17 2017 2017 HOH HOH A . G 5 HOH 18 2018 2018 HOH HOH A . G 5 HOH 19 2019 2019 HOH HOH A . G 5 HOH 20 2020 2020 HOH HOH A . G 5 HOH 21 2021 2021 HOH HOH A . G 5 HOH 22 2022 2022 HOH HOH A . G 5 HOH 23 2023 2023 HOH HOH A . G 5 HOH 24 2024 2024 HOH HOH A . G 5 HOH 25 2025 2025 HOH HOH A . G 5 HOH 26 2026 2026 HOH HOH A . G 5 HOH 27 2027 2027 HOH HOH A . G 5 HOH 28 2028 2028 HOH HOH A . G 5 HOH 29 2029 2029 HOH HOH A . G 5 HOH 30 2030 2030 HOH HOH A . G 5 HOH 31 2031 2031 HOH HOH A . G 5 HOH 32 2032 2032 HOH HOH A . G 5 HOH 33 2033 2033 HOH HOH A . G 5 HOH 34 2034 2034 HOH HOH A . G 5 HOH 35 2035 2035 HOH HOH A . G 5 HOH 36 2036 2036 HOH HOH A . G 5 HOH 37 2037 2037 HOH HOH A . G 5 HOH 38 2038 2038 HOH HOH A . G 5 HOH 39 2039 2039 HOH HOH A . G 5 HOH 40 2040 2040 HOH HOH A . G 5 HOH 41 2041 2041 HOH HOH A . G 5 HOH 42 2042 2042 HOH HOH A . G 5 HOH 43 2043 2043 HOH HOH A . G 5 HOH 44 2044 2044 HOH HOH A . G 5 HOH 45 2045 2045 HOH HOH A . G 5 HOH 46 2046 2046 HOH HOH A . G 5 HOH 47 2047 2047 HOH HOH A . G 5 HOH 48 2048 2048 HOH HOH A . G 5 HOH 49 2049 2049 HOH HOH A . G 5 HOH 50 2050 2050 HOH HOH A . G 5 HOH 51 2051 2051 HOH HOH A . G 5 HOH 52 2052 2052 HOH HOH A . G 5 HOH 53 2053 2053 HOH HOH A . G 5 HOH 54 2054 2054 HOH HOH A . # _pdbx_molecule_features.prd_id PRD_900003 _pdbx_molecule_features.name sucrose _pdbx_molecule_features.type Oligosaccharide _pdbx_molecule_features.class Nutrient _pdbx_molecule_features.details 'oligosaccharide with reducing-end-to-reducing-end glycosidic bond' # _pdbx_molecule.instance_id 1 _pdbx_molecule.prd_id PRD_900003 _pdbx_molecule.asym_id B # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2420 ? 1 MORE -60.3 ? 1 'SSA (A^2)' 7800 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 22_564 z+1/4,-y+5/4,x-1/4 0.0000000000 0.0000000000 1.0000000000 18.1540000000 0.0000000000 -1.0000000000 0.0000000000 90.7700000000 1.0000000000 0.0000000000 0.0000000000 -18.1540000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 2012 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id G _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? A CYS 6 ? A CYS 6 ? 1_555 ZN ? C ZN . ? A ZN 1065 ? 1_555 SG ? A CYS 9 ? A CYS 9 ? 1_555 104.8 ? 2 SG ? A CYS 6 ? A CYS 6 ? 1_555 ZN ? C ZN . ? A ZN 1065 ? 1_555 SG ? A CYS 33 ? A CYS 33 ? 1_555 115.2 ? 3 SG ? A CYS 9 ? A CYS 9 ? 1_555 ZN ? C ZN . ? A ZN 1065 ? 1_555 SG ? A CYS 33 ? A CYS 33 ? 1_555 117.4 ? 4 SG ? A CYS 6 ? A CYS 6 ? 1_555 ZN ? C ZN . ? A ZN 1065 ? 1_555 SG ? A CYS 36 ? A CYS 36 ? 1_555 112.4 ? 5 SG ? A CYS 9 ? A CYS 9 ? 1_555 ZN ? C ZN . ? A ZN 1065 ? 1_555 SG ? A CYS 36 ? A CYS 36 ? 1_555 112.6 ? 6 SG ? A CYS 33 ? A CYS 33 ? 1_555 ZN ? C ZN . ? A ZN 1065 ? 1_555 SG ? A CYS 36 ? A CYS 36 ? 1_555 94.5 ? 7 SG ? A CYS 28 ? A CYS 28 ? 1_555 ZN ? D ZN . ? A ZN 1066 ? 1_555 ND1 ? A HIS 30 ? A HIS 30 ? 1_555 116.1 ? 8 SG ? A CYS 28 ? A CYS 28 ? 1_555 ZN ? D ZN . ? A ZN 1066 ? 1_555 SG ? A CYS 47 ? A CYS 47 ? 1_555 109.1 ? 9 ND1 ? A HIS 30 ? A HIS 30 ? 1_555 ZN ? D ZN . ? A ZN 1066 ? 1_555 SG ? A CYS 47 ? A CYS 47 ? 1_555 107.3 ? 10 SG ? A CYS 28 ? A CYS 28 ? 1_555 ZN ? D ZN . ? A ZN 1066 ? 1_555 SG ? A CYS 50 ? A CYS 50 ? 1_555 99.4 ? 11 ND1 ? A HIS 30 ? A HIS 30 ? 1_555 ZN ? D ZN . ? A ZN 1066 ? 1_555 SG ? A CYS 50 ? A CYS 50 ? 1_555 110.9 ? 12 SG ? A CYS 47 ? A CYS 47 ? 1_555 ZN ? D ZN . ? A ZN 1066 ? 1_555 SG ? A CYS 50 ? A CYS 50 ? 1_555 114.2 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-07-28 2 'Structure model' 1 1 2011-08-24 3 'Structure model' 1 2 2011-09-14 4 'Structure model' 1 3 2012-10-03 5 'Structure model' 2 0 2020-07-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 5 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 2 'Structure model' Other 3 2 'Structure model' 'Refinement description' 4 2 'Structure model' 'Version format compliance' 5 3 'Structure model' 'Database references' 6 3 'Structure model' Other 7 3 'Structure model' 'Refinement description' 8 4 'Structure model' 'Database references' 9 5 'Structure model' 'Atomic model' 10 5 'Structure model' 'Data collection' 11 5 'Structure model' 'Derived calculations' 12 5 'Structure model' 'Non-polymer description' 13 5 'Structure model' Other 14 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' atom_site 2 5 'Structure model' atom_site_anisotrop 3 5 'Structure model' chem_comp 4 5 'Structure model' entity 5 5 'Structure model' entity_name_com 6 5 'Structure model' pdbx_branch_scheme 7 5 'Structure model' pdbx_chem_comp_identifier 8 5 'Structure model' pdbx_database_status 9 5 'Structure model' pdbx_entity_branch 10 5 'Structure model' pdbx_entity_branch_descriptor 11 5 'Structure model' pdbx_entity_branch_link 12 5 'Structure model' pdbx_entity_branch_list 13 5 'Structure model' pdbx_entity_nonpoly 14 5 'Structure model' pdbx_molecule_features 15 5 'Structure model' pdbx_nonpoly_scheme 16 5 'Structure model' pdbx_struct_conn_angle 17 5 'Structure model' struct_asym 18 5 'Structure model' struct_conn 19 5 'Structure model' struct_conn_type 20 5 'Structure model' struct_site 21 5 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_atom_site.B_iso_or_equiv' 2 5 'Structure model' '_atom_site.Cartn_x' 3 5 'Structure model' '_atom_site.Cartn_y' 4 5 'Structure model' '_atom_site.Cartn_z' 5 5 'Structure model' '_atom_site.auth_asym_id' 6 5 'Structure model' '_atom_site.auth_atom_id' 7 5 'Structure model' '_atom_site.auth_comp_id' 8 5 'Structure model' '_atom_site.auth_seq_id' 9 5 'Structure model' '_atom_site.label_asym_id' 10 5 'Structure model' '_atom_site.label_atom_id' 11 5 'Structure model' '_atom_site.label_comp_id' 12 5 'Structure model' '_atom_site.label_entity_id' 13 5 'Structure model' '_atom_site.type_symbol' 14 5 'Structure model' '_atom_site_anisotrop.U[1][1]' 15 5 'Structure model' '_atom_site_anisotrop.U[1][2]' 16 5 'Structure model' '_atom_site_anisotrop.U[1][3]' 17 5 'Structure model' '_atom_site_anisotrop.U[2][2]' 18 5 'Structure model' '_atom_site_anisotrop.U[2][3]' 19 5 'Structure model' '_atom_site_anisotrop.U[3][3]' 20 5 'Structure model' '_atom_site_anisotrop.pdbx_auth_asym_id' 21 5 'Structure model' '_atom_site_anisotrop.pdbx_auth_atom_id' 22 5 'Structure model' '_atom_site_anisotrop.pdbx_auth_comp_id' 23 5 'Structure model' '_atom_site_anisotrop.pdbx_auth_seq_id' 24 5 'Structure model' '_atom_site_anisotrop.pdbx_label_asym_id' 25 5 'Structure model' '_atom_site_anisotrop.pdbx_label_atom_id' 26 5 'Structure model' '_atom_site_anisotrop.pdbx_label_comp_id' 27 5 'Structure model' '_atom_site_anisotrop.type_symbol' 28 5 'Structure model' '_chem_comp.formula' 29 5 'Structure model' '_chem_comp.formula_weight' 30 5 'Structure model' '_chem_comp.id' 31 5 'Structure model' '_chem_comp.mon_nstd_flag' 32 5 'Structure model' '_chem_comp.name' 33 5 'Structure model' '_chem_comp.type' 34 5 'Structure model' '_entity.formula_weight' 35 5 'Structure model' '_entity.pdbx_description' 36 5 'Structure model' '_entity.pdbx_number_of_molecules' 37 5 'Structure model' '_entity.src_method' 38 5 'Structure model' '_entity.type' 39 5 'Structure model' '_pdbx_database_status.status_code_sf' 40 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 41 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 42 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 43 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 44 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 45 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 46 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 47 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 48 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 49 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 50 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 51 5 'Structure model' '_pdbx_struct_conn_angle.value' 52 5 'Structure model' '_struct_asym.entity_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 55.8890 36.5310 30.3780 0.0307 0.0488 0.2090 0.0068 0.0167 0.0537 2.4454 3.9592 5.3180 2.2465 -0.1393 -1.6036 0.1676 -0.1487 -0.4432 0.0495 -0.1774 -0.6287 0.0641 0.3202 0.0098 'X-RAY DIFFRACTION' 2 ? refined 44.9360 39.3710 26.2910 0.0070 0.0115 0.0113 0.0024 0.0074 0.0004 7.2990 8.3672 3.7284 0.0526 -2.0115 0.0013 0.0075 0.2419 -0.0155 -0.1413 -0.1150 -0.0240 0.0521 -0.1075 0.1075 'X-RAY DIFFRACTION' 3 ? refined 47.5120 30.9080 21.4890 0.0737 0.0655 0.1017 0.0287 0.0399 -0.0354 12.0679 6.1117 9.0311 2.3974 4.0990 1.3677 0.1085 0.7446 -0.6540 -0.4368 -0.1394 -0.2048 0.3511 0.3097 0.0309 'X-RAY DIFFRACTION' 4 ? refined 40.1790 29.7270 24.1280 0.1174 0.0487 0.3008 0.0069 -0.0969 -0.0747 2.7530 10.3634 8.9368 0.4222 -1.6795 4.0088 -0.0307 0.2325 -0.7000 -0.3071 0.3293 0.1710 0.6177 0.1458 -0.2986 'X-RAY DIFFRACTION' 5 ? refined 34.7420 33.4830 23.0590 0.1608 0.1027 0.5101 -0.0266 -0.2081 -0.0516 3.2451 1.3831 22.6128 1.1263 -6.3888 0.4609 -0.1141 0.4758 -0.0640 -0.1541 0.2582 0.2769 0.4135 -0.5198 -0.1442 'X-RAY DIFFRACTION' 6 ? refined 44.4450 41.8790 20.2910 0.0850 0.0470 0.0517 -0.0060 -0.0107 -0.0002 7.2949 9.9647 2.7477 4.7939 0.6611 0.3563 -0.3323 0.3962 0.0297 -0.8253 0.1848 0.3763 0.0435 -0.1755 0.1475 'X-RAY DIFFRACTION' 7 ? refined 52.0340 32.4170 28.4070 0.0274 0.0326 0.2316 0.0139 0.0410 0.0524 0.0054 0.0267 0.0073 -0.0002 0.0016 0.0078 0.0032 0.0100 0.0022 0.0145 -0.0005 0.0011 0.0054 -0.0019 -0.0028 'X-RAY DIFFRACTION' 8 ? refined 38.0570 36.8780 28.9530 0.0285 0.0207 0.0799 -0.0063 0.0437 0.0029 0.0005 0.0008 0.0040 0.0003 -0.0007 -0.0009 -0.0025 0.0015 -0.0026 -0.0002 -0.0008 0.0010 0.0060 -0.0052 0.0033 'X-RAY DIFFRACTION' 9 ? refined 57.5100 45.3460 21.6200 0.0075 0.0444 0.0753 -0.0121 0.0212 -0.0344 7.0767 10.9303 9.5229 -6.5620 -8.2084 7.5197 0.0949 -0.3114 0.1250 -0.1018 0.0461 -0.2394 -0.1078 0.3658 -0.1410 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 1 ? ? A 21 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 22 ? ? A 34 ? ? ? ? 'X-RAY DIFFRACTION' 3 3 A 35 ? ? A 41 ? ? ? ? 'X-RAY DIFFRACTION' 4 4 A 42 ? ? A 50 ? ? ? ? 'X-RAY DIFFRACTION' 5 5 A 51 ? ? A 55 ? ? ? ? 'X-RAY DIFFRACTION' 6 6 A 56 ? ? A 64 ? ? ? ? 'X-RAY DIFFRACTION' 7 7 A 1065 ? ? A 1065 ? ? ? ? 'X-RAY DIFFRACTION' 8 8 A 1066 ? ? A 1066 ? ? ? ? 'X-RAY DIFFRACTION' 9 9 A 1067 ? ? A 1067 ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.6.0073 ? 1 HKL-2000 'data reduction' . ? 2 HKL-2000 'data scaling' . ? 3 SHELX phasing . ? 4 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ARG A 51 ? ? 55.70 18.74 2 1 ARG A 58 ? ? -85.73 48.57 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero B 2 GLC 1 B GLC 1 A SUC 1067 n B 2 FRU 2 B FRU 2 A SUC 1067 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier FRU 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DFrufb FRU 'COMMON NAME' GMML 1.0 b-D-fructofuranose FRU 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Fruf FRU 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Fru GLC 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpa GLC 'COMMON NAME' GMML 1.0 a-D-glucopyranose GLC 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-Glcp GLC 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Glc # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 DFrufb2-1DGlcpa 'Glycam Condensed Sequence' GMML 1.0 2 2 'WURCS=2.0/2,2,1/[ha122h-2b_2-5][a2122h-1a_1-5]/1-2/a2-b1' WURCS PDB2Glycan 1.1.0 3 2 '[][b-D-Fruf]{[(2+1)][a-D-Glcp]{}}' LINUCS PDB-CARE ? # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 1 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.entity_branch_list_num_2 2 _pdbx_entity_branch_link.comp_id_2 FRU _pdbx_entity_branch_link.atom_id_2 O2 _pdbx_entity_branch_link.leaving_atom_id_2 HO2 _pdbx_entity_branch_link.value_order sing _pdbx_entity_branch_link.details ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 GLC 1 n 2 FRU 2 n # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'ZINC ION' ZN 4 'SULFATE ION' SO4 5 water HOH #