HEADER TRANSCRIPTION 18-MAY-10 2XEU TITLE RING DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: RING FINGER PROTEIN 4; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RING DOMAIN, RESIDUES 130-190; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSCRIPTION, ZINC-FINGER, METAL-BINDING EXPDTA X-RAY DIFFRACTION AUTHOR A.PLECHANOVOVA,S.A.MCMAHON,K.A.JOHNSON,I.NAVRATILOVA,J.H.NAISMITH, AUTHOR 2 R.T.HAY REVDAT 5 29-JUL-20 2XEU 1 COMPND REMARK HET HETNAM REVDAT 5 2 1 FORMUL LINK SITE ATOM REVDAT 4 03-OCT-12 2XEU 1 JRNL REVDAT 3 14-SEP-11 2XEU 1 JRNL REMARK MASTER REVDAT 2 24-AUG-11 2XEU 1 JRNL REMARK VERSN REVDAT 1 28-JUL-10 2XEU 0 JRNL AUTH A.PLECHANOVOVA,E.G.JAFFRAY,S.A.MCMAHON,K.A.JOHNSON, JRNL AUTH 2 I.NAVRATILOVA,J.H.NAISMITH,R.T.HAY JRNL TITL MECHANISM OF UBIQUITYLATION BY DIMERIC RING LIGASE RNF4 JRNL REF NAT.STRUCT.MOL.BIOL. V. 18 1052 2011 JRNL REFN ISSN 1545-9993 JRNL PMID 21857666 JRNL DOI 10.1038/NSMB.2108 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 18.15 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 10391 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 525 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 727 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.1550 REMARK 3 BIN FREE R VALUE SET COUNT : 48 REMARK 3 BIN FREE R VALUE : 0.1720 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 498 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 35 REMARK 3 SOLVENT ATOMS : 54 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.089 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.072 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.051 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.011 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.957 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 558 ; 0.009 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 382 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 749 ; 1.439 ; 2.026 REMARK 3 BOND ANGLES OTHERS (DEGREES): 930 ; 0.938 ; 3.015 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 66 ; 6.820 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 21 ;24.178 ;22.857 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 96 ;11.322 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ;13.871 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 87 ; 0.075 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 571 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 102 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3051 ; 2.674 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 54 ; 6.755 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 924 ; 3.955 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 21 REMARK 3 ORIGIN FOR THE GROUP (A): 55.8890 36.5310 30.3780 REMARK 3 T TENSOR REMARK 3 T11: 0.0307 T22: 0.0488 REMARK 3 T33: 0.2090 T12: 0.0068 REMARK 3 T13: 0.0167 T23: 0.0537 REMARK 3 L TENSOR REMARK 3 L11: 2.4454 L22: 3.9592 REMARK 3 L33: 5.3180 L12: 2.2465 REMARK 3 L13: -0.1393 L23: -1.6036 REMARK 3 S TENSOR REMARK 3 S11: 0.1676 S12: -0.1487 S13: -0.4432 REMARK 3 S21: 0.0495 S22: -0.1774 S23: -0.6287 REMARK 3 S31: 0.0641 S32: 0.3202 S33: 0.0098 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 22 A 34 REMARK 3 ORIGIN FOR THE GROUP (A): 44.9360 39.3710 26.2910 REMARK 3 T TENSOR REMARK 3 T11: 0.0070 T22: 0.0115 REMARK 3 T33: 0.0113 T12: 0.0024 REMARK 3 T13: 0.0074 T23: 0.0004 REMARK 3 L TENSOR REMARK 3 L11: 7.2990 L22: 8.3672 REMARK 3 L33: 3.7284 L12: 0.0526 REMARK 3 L13: -2.0115 L23: 0.0013 REMARK 3 S TENSOR REMARK 3 S11: 0.0075 S12: 0.2419 S13: -0.0155 REMARK 3 S21: -0.1413 S22: -0.1150 S23: -0.0240 REMARK 3 S31: 0.0521 S32: -0.1075 S33: 0.1075 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 35 A 41 REMARK 3 ORIGIN FOR THE GROUP (A): 47.5120 30.9080 21.4890 REMARK 3 T TENSOR REMARK 3 T11: 0.0737 T22: 0.0655 REMARK 3 T33: 0.1017 T12: 0.0287 REMARK 3 T13: 0.0399 T23: -0.0354 REMARK 3 L TENSOR REMARK 3 L11: 12.0679 L22: 6.1117 REMARK 3 L33: 9.0311 L12: 2.3974 REMARK 3 L13: 4.0990 L23: 1.3677 REMARK 3 S TENSOR REMARK 3 S11: 0.1085 S12: 0.7446 S13: -0.6540 REMARK 3 S21: -0.4368 S22: -0.1394 S23: -0.2048 REMARK 3 S31: 0.3511 S32: 0.3097 S33: 0.0309 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 42 A 50 REMARK 3 ORIGIN FOR THE GROUP (A): 40.1790 29.7270 24.1280 REMARK 3 T TENSOR REMARK 3 T11: 0.1174 T22: 0.0487 REMARK 3 T33: 0.3008 T12: 0.0069 REMARK 3 T13: -0.0969 T23: -0.0747 REMARK 3 L TENSOR REMARK 3 L11: 2.7530 L22: 10.3634 REMARK 3 L33: 8.9368 L12: 0.4222 REMARK 3 L13: -1.6795 L23: 4.0088 REMARK 3 S TENSOR REMARK 3 S11: -0.0307 S12: 0.2325 S13: -0.7000 REMARK 3 S21: -0.3071 S22: 0.3293 S23: 0.1710 REMARK 3 S31: 0.6177 S32: 0.1458 S33: -0.2986 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 51 A 55 REMARK 3 ORIGIN FOR THE GROUP (A): 34.7420 33.4830 23.0590 REMARK 3 T TENSOR REMARK 3 T11: 0.1608 T22: 0.1027 REMARK 3 T33: 0.5101 T12: -0.0266 REMARK 3 T13: -0.2081 T23: -0.0516 REMARK 3 L TENSOR REMARK 3 L11: 3.2451 L22: 1.3831 REMARK 3 L33: 22.6128 L12: 1.1263 REMARK 3 L13: -6.3888 L23: 0.4609 REMARK 3 S TENSOR REMARK 3 S11: -0.1141 S12: 0.4758 S13: -0.0640 REMARK 3 S21: -0.1541 S22: 0.2582 S23: 0.2769 REMARK 3 S31: 0.4135 S32: -0.5198 S33: -0.1442 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 56 A 64 REMARK 3 ORIGIN FOR THE GROUP (A): 44.4450 41.8790 20.2910 REMARK 3 T TENSOR REMARK 3 T11: 0.0850 T22: 0.0470 REMARK 3 T33: 0.0517 T12: -0.0060 REMARK 3 T13: -0.0107 T23: -0.0002 REMARK 3 L TENSOR REMARK 3 L11: 7.2949 L22: 9.9647 REMARK 3 L33: 2.7477 L12: 4.7939 REMARK 3 L13: 0.6611 L23: 0.3563 REMARK 3 S TENSOR REMARK 3 S11: -0.3323 S12: 0.3962 S13: 0.0297 REMARK 3 S21: -0.8253 S22: 0.1848 S23: 0.3763 REMARK 3 S31: 0.0435 S32: -0.1755 S33: 0.1475 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1065 A 1065 REMARK 3 ORIGIN FOR THE GROUP (A): 52.0340 32.4170 28.4070 REMARK 3 T TENSOR REMARK 3 T11: 0.0274 T22: 0.0326 REMARK 3 T33: 0.2316 T12: 0.0139 REMARK 3 T13: 0.0410 T23: 0.0524 REMARK 3 L TENSOR REMARK 3 L11: 0.0054 L22: 0.0267 REMARK 3 L33: 0.0073 L12: -0.0002 REMARK 3 L13: 0.0016 L23: 0.0078 REMARK 3 S TENSOR REMARK 3 S11: 0.0032 S12: 0.0100 S13: 0.0022 REMARK 3 S21: 0.0145 S22: -0.0005 S23: 0.0011 REMARK 3 S31: 0.0054 S32: -0.0019 S33: -0.0028 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1066 A 1066 REMARK 3 ORIGIN FOR THE GROUP (A): 38.0570 36.8780 28.9530 REMARK 3 T TENSOR REMARK 3 T11: 0.0285 T22: 0.0207 REMARK 3 T33: 0.0799 T12: -0.0063 REMARK 3 T13: 0.0437 T23: 0.0029 REMARK 3 L TENSOR REMARK 3 L11: 0.0005 L22: 0.0008 REMARK 3 L33: 0.0040 L12: 0.0003 REMARK 3 L13: -0.0007 L23: -0.0009 REMARK 3 S TENSOR REMARK 3 S11: -0.0025 S12: 0.0015 S13: -0.0026 REMARK 3 S21: -0.0002 S22: -0.0008 S23: 0.0010 REMARK 3 S31: 0.0060 S32: -0.0052 S33: 0.0033 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1067 A 1067 REMARK 3 ORIGIN FOR THE GROUP (A): 57.5100 45.3460 21.6200 REMARK 3 T TENSOR REMARK 3 T11: 0.0075 T22: 0.0444 REMARK 3 T33: 0.0753 T12: -0.0121 REMARK 3 T13: 0.0212 T23: -0.0344 REMARK 3 L TENSOR REMARK 3 L11: 7.0767 L22: 10.9303 REMARK 3 L33: 9.5229 L12: -6.5620 REMARK 3 L13: -8.2084 L23: 7.5197 REMARK 3 S TENSOR REMARK 3 S11: 0.0949 S12: -0.3114 S13: 0.1250 REMARK 3 S21: -0.1018 S22: 0.0461 S23: -0.2394 REMARK 3 S31: -0.1078 S32: 0.3658 S33: -0.1410 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT. U REMARK 3 VALUES WITH TLS ADDED. REMARK 4 REMARK 4 2XEU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-MAY-10. REMARK 100 THE DEPOSITION ID IS D_1290043956. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.28 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10402 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 18.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 9.000 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : 0.43000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 Y+3/4,X+1/4,-Z+1/4 REMARK 290 14555 -Y+3/4,-X+3/4,-Z+3/4 REMARK 290 15555 Y+1/4,-X+1/4,Z+3/4 REMARK 290 16555 -Y+1/4,X+3/4,Z+1/4 REMARK 290 17555 X+3/4,Z+1/4,-Y+1/4 REMARK 290 18555 -X+1/4,Z+3/4,Y+1/4 REMARK 290 19555 -X+3/4,-Z+3/4,-Y+3/4 REMARK 290 20555 X+1/4,-Z+1/4,Y+3/4 REMARK 290 21555 Z+3/4,Y+1/4,-X+1/4 REMARK 290 22555 Z+1/4,-Y+1/4,X+3/4 REMARK 290 23555 -Z+1/4,Y+3/4,X+1/4 REMARK 290 24555 -Z+3/4,-Y+3/4,-X+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 36.30800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 36.30800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.30800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 36.30800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.30800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.30800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 36.30800 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 36.30800 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 36.30800 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 36.30800 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 36.30800 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 36.30800 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 36.30800 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 36.30800 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 36.30800 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 36.30800 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 36.30800 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 36.30800 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 54.46200 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 18.15400 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 18.15400 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 54.46200 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 54.46200 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 54.46200 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 18.15400 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 18.15400 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 54.46200 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 18.15400 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 54.46200 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 18.15400 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 54.46200 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 18.15400 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 18.15400 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 18.15400 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 54.46200 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 18.15400 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 54.46200 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 54.46200 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 54.46200 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 18.15400 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 18.15400 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 54.46200 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 54.46200 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 18.15400 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 18.15400 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 18.15400 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 18.15400 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 54.46200 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 18.15400 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 54.46200 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 18.15400 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 54.46200 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 54.46200 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 54.46200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -60.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 18.15400 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 90.77000 REMARK 350 BIOMT3 2 1.000000 0.000000 0.000000 -18.15400 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2012 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 51 18.74 55.70 REMARK 500 ARG A 58 48.57 -85.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1065 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 6 SG REMARK 620 2 CYS A 9 SG 104.8 REMARK 620 3 CYS A 33 SG 115.2 117.4 REMARK 620 4 CYS A 36 SG 112.4 112.6 94.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1066 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 28 SG REMARK 620 2 HIS A 30 ND1 116.1 REMARK 620 3 CYS A 47 SG 109.1 107.3 REMARK 620 4 CYS A 50 SG 99.4 110.9 114.2 REMARK 620 N 1 2 3 DBREF 2XEU A 4 64 UNP P78317 RNF4_HUMAN 130 190 SEQADV 2XEU GLY A 1 UNP P78317 EXPRESSION TAG SEQADV 2XEU ALA A 2 UNP P78317 EXPRESSION TAG SEQADV 2XEU MET A 3 UNP P78317 EXPRESSION TAG SEQRES 1 A 64 GLY ALA MET VAL SER CYS PRO ILE CYS MET ASP GLY TYR SEQRES 2 A 64 SER GLU ILE VAL GLN ASN GLY ARG LEU ILE VAL SER THR SEQRES 3 A 64 GLU CYS GLY HIS VAL PHE CYS SER GLN CYS LEU ARG ASP SEQRES 4 A 64 SER LEU LYS ASN ALA ASN THR CYS PRO THR CYS ARG LYS SEQRES 5 A 64 LYS ILE ASN HIS LYS ARG TYR HIS PRO ILE TYR ILE HET GLC B 1 11 HET FRU B 2 12 HET ZN A1065 1 HET ZN A1066 1 HET SO4 A1068 5 HET SO4 A1069 5 HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM FRU BETA-D-FRUCTOFURANOSE HETNAM ZN ZINC ION HETNAM SO4 SULFATE ION FORMUL 2 GLC C6 H12 O6 FORMUL 2 FRU C6 H12 O6 FORMUL 3 ZN 2(ZN 2+) FORMUL 5 SO4 2(O4 S 2-) FORMUL 7 HOH *54(H2 O) HELIX 1 1 GLY A 12 ASN A 19 1 8 HELIX 2 2 SER A 34 ALA A 44 1 11 SHEET 1 AA 3 VAL A 31 CYS A 33 0 SHEET 2 AA 3 ILE A 23 THR A 26 -1 O VAL A 24 N PHE A 32 SHEET 3 AA 3 TYR A 59 PRO A 61 -1 O HIS A 60 N SER A 25 LINK C1 GLC B 1 O2 FRU B 2 1555 1555 1.42 LINK SG CYS A 6 ZN ZN A1065 1555 1555 2.38 LINK SG CYS A 9 ZN ZN A1065 1555 1555 2.35 LINK SG CYS A 28 ZN ZN A1066 1555 1555 2.35 LINK ND1 HIS A 30 ZN ZN A1066 1555 1555 2.06 LINK SG CYS A 33 ZN ZN A1065 1555 1555 2.39 LINK SG CYS A 36 ZN ZN A1065 1555 1555 2.37 LINK SG CYS A 47 ZN ZN A1066 1555 1555 2.35 LINK SG CYS A 50 ZN ZN A1066 1555 1555 2.36 CRYST1 72.616 72.616 72.616 90.00 90.00 90.00 P 41 3 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013771 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013771 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013771 0.00000