HEADER SUGAR BINDING PROTEIN 21-MAY-10 2XFD TITLE VCBM60 IN COMPLEX WITH CELLOBIOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CARBOHYDRATE BINDING MODULE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: VCBM60 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 OTHER_DETAILS: ENVIRONMENTAL ISOLATE KEYWDS SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.MONTANIER,J.E.FLINT,D.N.BOLAM,H.XIE,Z.LIU,A.ROGOWSKI,D.P.WEINER, AUTHOR 2 D.NURIZZO,S.M.ROBERTS,J.P.TURKENBURG,G.J.DAVIES,H.J.GILBERT REVDAT 4 01-MAY-24 2XFD 1 HETSYN REVDAT 3 29-JUL-20 2XFD 1 COMPND REMARK HET HETNAM REVDAT 3 2 1 FORMUL LINK SITE ATOM REVDAT 2 15-AUG-12 2XFD 1 COMPND AUTHOR JRNL REMARK REVDAT 2 2 1 VERSN DBREF SEQADV HETSYN REVDAT 1 16-JUN-10 2XFD 0 JRNL AUTH C.MONTANIER,J.E.FLINT,D.N.BOLAM,H.XIE,Z.LIU,A.ROGOWSKI, JRNL AUTH 2 D.P.WEINER,S.RATNAPARKHE,D.NURIZZO,S.M.ROBERTS, JRNL AUTH 3 J.P.TURKENBURG,G.J.DAVIES,H.J.GILBERT JRNL TITL CIRCULAR PERMUTATION PROVIDES AN EVOLUTIONARY LINK BETWEEN JRNL TITL 2 TWO FAMILIES OF CALCIUM-DEPENDENT CARBOHYDRATE BINDING JRNL TITL 3 MODULES. JRNL REF J.BIOL.CHEM. V. 285 31742 2010 JRNL REFN ISSN 0021-9258 JRNL PMID 20659893 JRNL DOI 10.1074/JBC.M110.142133 REMARK 2 REMARK 2 RESOLUTION. 1.19 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0066 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.19 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.04 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 30656 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.119 REMARK 3 R VALUE (WORKING SET) : 0.117 REMARK 3 FREE R VALUE : 0.148 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1630 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.19 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.22 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2246 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.83 REMARK 3 BIN R VALUE (WORKING SET) : 0.1430 REMARK 3 BIN FREE R VALUE SET COUNT : 119 REMARK 3 BIN FREE R VALUE : 0.1650 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 816 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 31 REMARK 3 SOLVENT ATOMS : 172 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 7.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.14000 REMARK 3 B22 (A**2) : -0.03000 REMARK 3 B33 (A**2) : -0.11000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.031 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.033 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.016 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.760 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.962 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 870 ; 0.023 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 728 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1188 ; 1.890 ; 1.921 REMARK 3 BOND ANGLES OTHERS (DEGREES): 1688 ; 0.828 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 114 ; 6.932 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 42 ;36.039 ;25.476 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 125 ; 8.342 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 5 ; 9.114 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 143 ; 0.143 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 988 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 170 ; 0.000 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 540 ; 2.107 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 236 ; 1.027 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 872 ; 2.925 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 308 ; 3.957 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 288 ; 5.251 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 1598 ; 2.016 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 174 ;14.526 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 1582 ; 5.408 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES REFINED INDIVIDUALLY. REMARK 4 REMARK 4 2XFD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-MAY-10. REMARK 100 THE DEPOSITION ID IS D_1290044026. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-APR-09 REMARK 200 TEMPERATURE (KELVIN) : 287 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97980 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30656 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.190 REMARK 200 RESOLUTION RANGE LOW (A) : 40.040 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.19 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.22 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.18000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: APO-VCBM60 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.4 M SODIUM MALONATE, 10 MM REMARK 280 CELLOTRIOSE, PH 8 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 14.80500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.04000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 20.99500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 40.04000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 14.80500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 20.99500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 SER A 1 REMARK 465 SER A 111 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2021 O HOH A 2022 2.00 REMARK 500 NE2 GLN A 27 O HOH A 2050 2.04 REMARK 500 O HOH A 2030 O HOH A 2032 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2047 O HOH A 2061 1655 1.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL A 11 CB VAL A 11 CG2 -0.230 REMARK 500 TYR A 104 CZ TYR A 104 CE2 -0.082 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2073 DISTANCE = 5.86 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1111 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 55 OD1 REMARK 620 2 ARG A 59 O 78.3 REMARK 620 3 ASP A 60 OD2 140.3 74.0 REMARK 620 4 HIS A 100 O 78.6 115.0 87.9 REMARK 620 5 HOH A2100 O 97.2 80.8 105.7 161.9 REMARK 620 6 BGC B 2 O2 139.0 141.9 75.7 86.1 85.8 REMARK 620 7 BGC B 2 O3 73.7 144.1 141.1 81.1 80.8 66.4 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1112 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 64 OD1 REMARK 620 2 ASP A 64 O 76.7 REMARK 620 3 GLN A 74 OE1 95.7 80.1 REMARK 620 4 GLU A 76 OE2 154.2 80.3 91.8 REMARK 620 5 GLU A 76 OE1 152.4 130.8 88.1 52.3 REMARK 620 6 GLU A 97 OE2 87.0 97.3 175.7 84.4 91.1 REMARK 620 7 HOH A2110 O 75.1 148.4 88.8 129.9 77.6 95.1 REMARK 620 N 1 2 3 4 5 6 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2XFE RELATED DB: PDB REMARK 900 VCBM60 IN COMPLEX WITH GALACTOBIOSE REMARK 900 RELATED ID: 2XHH RELATED DB: PDB REMARK 900 CIRCULAR PERMUTATION PROVIDES AN EVOLUTIONARY LINK BETWEEN TWO REMARK 900 FAMILIES OF CALCIUM-DEPENDENT CARBOHYDRATE BINDING MODULES REMARK 900 RELATED ID: 2XHJ RELATED DB: PDB REMARK 900 CIRCULAR PERMUTATION PROVIDES AN EVOLUTIONARY LINK BETWEEN TWO REMARK 900 FAMILIES OF CALCIUM-DEPENDENT CARBOHYDRATE BINDING MODULES. SEMET REMARK 900 FORM OF VCBM60. DBREF 2XFD A 2 111 UNP D7GNB4 D7GNB4_9BACT 2 111 SEQADV 2XFD MET A 0 UNP D7GNB4 EXPRESSION TAG SEQADV 2XFD SER A 1 UNP D7GNB4 EXPRESSION TAG SEQRES 1 A 112 MET SER ASN SER ILE THR VAL ARG ALA ARG GLY VAL ASN SEQRES 2 A 112 GLY GLN GLU SER VAL SER LEU GLN VAL GLY GLY THR THR SEQRES 3 A 112 VAL GLN THR TRP THR LEU THR THR ALA MET GLN ASP TYR SEQRES 4 A 112 THR ALA SER THR SER LEU THR GLY GLU ILE ARG VAL ALA SEQRES 5 A 112 PHE THR ASN ASP ALA THR GLY ARG ASP VAL GLN VAL ASP SEQRES 6 A 112 TYR ILE VAL VAL ASN GLY GLN THR ARG GLN ALA GLU ASN SEQRES 7 A 112 GLN SER VAL ASN THR GLY VAL TRP ALA ASN ASN GLN CYS SEQRES 8 A 112 GLY GLY SER GLY ASN SER GLU TRP LEU HIS CYS ASN GLY SEQRES 9 A 112 TYR ILE SER PHE GLY ASN VAL SER HET BGC B 1 12 HET BGC B 2 11 HET CA A1111 1 HET CA A1112 1 HET GOL A1114 6 HETNAM BGC BETA-D-GLUCOPYRANOSE HETNAM CA CALCIUM ION HETNAM GOL GLYCEROL HETSYN BGC BETA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 BGC 2(C6 H12 O6) FORMUL 3 CA 2(CA 2+) FORMUL 5 GOL C3 H8 O3 FORMUL 6 HOH *172(H2 O) HELIX 1 1 GLU A 76 GLN A 78 5 3 SHEET 1 AA 4 GLN A 36 SER A 41 0 SHEET 2 AA 4 SER A 3 GLY A 10 -1 O ILE A 4 N ALA A 40 SHEET 3 AA 4 VAL A 61 VAL A 68 -1 O GLN A 62 N ARG A 9 SHEET 4 AA 4 GLN A 71 GLN A 74 -1 O GLN A 71 N VAL A 68 SHEET 1 AB 4 GLN A 36 SER A 41 0 SHEET 2 AB 4 SER A 3 GLY A 10 -1 O ILE A 4 N ALA A 40 SHEET 3 AB 4 VAL A 61 VAL A 68 -1 O GLN A 62 N ARG A 9 SHEET 4 AB 4 TRP A 98 LEU A 99 -1 O LEU A 99 N VAL A 61 SHEET 1 AC 2 GLN A 71 GLN A 74 0 SHEET 2 AC 2 VAL A 61 VAL A 68 -1 O ILE A 66 N ARG A 73 SHEET 1 AD 4 THR A 24 THR A 30 0 SHEET 2 AD 4 SER A 16 VAL A 21 -1 O VAL A 17 N TRP A 29 SHEET 3 AD 4 GLU A 47 PHE A 52 -1 O ARG A 49 N GLN A 20 SHEET 4 AD 4 GLY A 103 ASN A 109 -1 O GLY A 103 N PHE A 52 SHEET 1 AE 2 TRP A 85 ALA A 86 0 SHEET 2 AE 2 GLN A 89 CYS A 90 -1 O GLN A 89 N ALA A 86 SSBOND 1 CYS A 90 CYS A 101 1555 1555 2.08 LINK O4 BGC B 1 C1 BGC B 2 1555 1555 1.43 LINK OD1 ASP A 55 CA CA A1111 1555 1555 2.43 LINK O ARG A 59 CA CA A1111 1555 1555 2.37 LINK OD2 ASP A 60 CA CA A1111 1555 1555 2.34 LINK OD1 ASP A 64 CA CA A1112 1555 1555 2.32 LINK O ASP A 64 CA CA A1112 1555 1555 2.47 LINK OE1 GLN A 74 CA CA A1112 1555 1555 2.32 LINK OE2 GLU A 76 CA CA A1112 1555 1555 2.46 LINK OE1 GLU A 76 CA CA A1112 1555 1555 2.50 LINK OE2 GLU A 97 CA CA A1112 1555 1555 2.34 LINK O HIS A 100 CA CA A1111 1555 1555 2.33 LINK CA CA A1111 O HOH A2100 1555 1555 2.39 LINK CA CA A1111 O2 BGC B 2 1555 1555 2.56 LINK CA CA A1111 O3 BGC B 2 1555 1555 2.47 LINK CA CA A1112 O HOH A2110 1555 1555 2.38 CRYST1 29.610 41.990 80.080 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.033772 0.000000 0.000000 0.00000 SCALE2 0.000000 0.023815 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012488 0.00000