HEADER IMMUNE SYSTEM 28-MAY-10 2XFX TITLE CATTLE MHC CLASS I N01301 PRESENTING AN 11MER FROM THEILERIA PARVA COMPND MOL_ID: 1; COMPND 2 MOLECULE: MHC CLASS 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 22-297; COMPND 5 SYNONYM: N01301; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: MHC CLASS I ALPHA CHAIN; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: BETA-2-MICROGLOBULIN; COMPND 10 CHAIN: B; COMPND 11 SYNONYM: LACTOLLIN; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 15 CHAIN: C; COMPND 16 FRAGMENT: 214-224 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: CATTLE; SOURCE 4 ORGANISM_TAXID: 9913; SOURCE 5 STRAIN: BRITISH FRIESIAN CATTLE; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTABLUE (DE3); SOURCE 9 EXPRESSION_SYSTEM_PLASMID: POPIN-I; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 12 ORGANISM_COMMON: CATTLE; SOURCE 13 ORGANISM_TAXID: 9913; SOURCE 14 STRAIN: BRITISH FRIESIAN CATTLE; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 17 EXPRESSION_SYSTEM_STRAIN: ROSETTABLUE (DE3); SOURCE 18 MOL_ID: 3; SOURCE 19 ORGANISM_SCIENTIFIC: THEILERIA PARVA; SOURCE 20 ORGANISM_TAXID: 5875 KEYWDS IMMUNE SYSTEM, MAJOR HISTOCOMPATIBILITY, EAST COAST FEVER, KEYWDS 2 THEILERIOSIS EXPDTA X-RAY DIFFRACTION AUTHOR I.K.MACDONALD,M.HARKIOLAKI,L.HUNT,W.I.MORRISON,T.CONNELLEY, AUTHOR 2 S.P.GRAHAM,E.Y.JONES,D.R.FLOWER,S.A.ELLIS REVDAT 3 20-DEC-23 2XFX 1 REMARK REVDAT 2 28-MAR-12 2XFX 1 JRNL REMARK VERSN REVDAT 1 27-OCT-10 2XFX 0 JRNL AUTH I.K.MACDONALD,M.HARKIOLAKI,L.HUNT,T.CONNELLEY,A.V.CARROLL, JRNL AUTH 2 N.D.MACHUGH,S.P.GRAHAM,E.Y.JONES,W.I.MORRISON,D.R.FLOWER, JRNL AUTH 3 S.A.ELLIS JRNL TITL MHC CLASS I BOUND TO AN IMMUNODOMINANT THEILERIA PARVA JRNL TITL 2 EPITOPE DEMONSTRATES UNCONVENTIONAL PRESENTATION TO T CELL JRNL TITL 3 RECEPTORS. JRNL REF PLOS PATHOG. V. 6 01149 2010 JRNL REFN ISSN 1553-7366 JRNL PMID 20976198 JRNL DOI 10.1371/JOURNAL.PPAT.1001149 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0070 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.51 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 41373 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2207 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3042 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.72 REMARK 3 BIN R VALUE (WORKING SET) : 0.3110 REMARK 3 BIN FREE R VALUE SET COUNT : 159 REMARK 3 BIN FREE R VALUE : 0.3620 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3192 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 149 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.25000 REMARK 3 B22 (A**2) : 0.28000 REMARK 3 B33 (A**2) : -0.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.132 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.131 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.095 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.667 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3282 ; 0.024 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 2320 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4450 ; 1.867 ; 1.947 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5568 ; 1.030 ; 3.002 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 384 ; 6.666 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 182 ;30.123 ;23.352 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 546 ;14.127 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 33 ;16.580 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 442 ; 0.126 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3690 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 712 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 99 REMARK 3 ORIGIN FOR THE GROUP (A): 77.0214 39.0384 30.1836 REMARK 3 T TENSOR REMARK 3 T11: 0.1424 T22: 0.0135 REMARK 3 T33: 0.0578 T12: 0.0059 REMARK 3 T13: -0.0091 T23: -0.0196 REMARK 3 L TENSOR REMARK 3 L11: 0.4982 L22: 0.8854 REMARK 3 L33: 2.3597 L12: 0.1841 REMARK 3 L13: -0.5805 L23: 0.1320 REMARK 3 S TENSOR REMARK 3 S11: 0.0513 S12: 0.0100 S13: 0.0359 REMARK 3 S21: 0.2245 S22: -0.0379 S23: 0.0061 REMARK 3 S31: 0.0892 S32: 0.0034 S33: -0.0134 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 181 A 277 REMARK 3 ORIGIN FOR THE GROUP (A): 78.5843 61.2540 32.9747 REMARK 3 T TENSOR REMARK 3 T11: 0.1339 T22: 0.1103 REMARK 3 T33: 0.0499 T12: -0.0129 REMARK 3 T13: 0.0137 T23: -0.0025 REMARK 3 L TENSOR REMARK 3 L11: 0.5561 L22: 0.5823 REMARK 3 L33: 3.1165 L12: 0.1407 REMARK 3 L13: 0.7499 L23: 1.2207 REMARK 3 S TENSOR REMARK 3 S11: -0.0031 S12: -0.0666 S13: -0.0723 REMARK 3 S21: -0.1886 S22: -0.0087 S23: 0.0450 REMARK 3 S31: -0.3643 S32: 0.0574 S33: 0.0118 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 180 REMARK 3 ORIGIN FOR THE GROUP (A): 72.7197 40.8149 3.7307 REMARK 3 T TENSOR REMARK 3 T11: 0.0578 T22: 0.0701 REMARK 3 T33: 0.1066 T12: 0.0243 REMARK 3 T13: -0.0051 T23: -0.0186 REMARK 3 L TENSOR REMARK 3 L11: 0.7140 L22: 0.2146 REMARK 3 L33: 1.0068 L12: -0.1536 REMARK 3 L13: 0.2836 L23: 0.2880 REMARK 3 S TENSOR REMARK 3 S11: -0.0397 S12: 0.0499 S13: -0.0370 REMARK 3 S21: -0.0220 S22: -0.0215 S23: -0.0027 REMARK 3 S31: -0.1256 S32: -0.1137 S33: 0.0612 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 8 C 18 REMARK 3 ORIGIN FOR THE GROUP (A): 73.4040 36.0306 -4.7008 REMARK 3 T TENSOR REMARK 3 T11: 0.0780 T22: 0.0970 REMARK 3 T33: 0.0824 T12: 0.0195 REMARK 3 T13: 0.0066 T23: 0.0045 REMARK 3 L TENSOR REMARK 3 L11: 2.8356 L22: 1.2651 REMARK 3 L33: 1.1702 L12: -0.9062 REMARK 3 L13: -1.6761 L23: 0.9505 REMARK 3 S TENSOR REMARK 3 S11: -0.1725 S12: -0.1393 S13: -0.0724 REMARK 3 S21: -0.0093 S22: 0.1360 S23: 0.0089 REMARK 3 S31: 0.0651 S32: 0.1072 S33: 0.0364 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B REMARK 3 FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U REMARK 3 FACTORS. REMARK 4 REMARK 4 2XFX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-MAY-10. REMARK 100 THE DEPOSITION ID IS D_1290044092. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-DEC-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44056 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : 1.00000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1AGF REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 8000, 50MM POTASSIUM REMARK 280 PHOSPHATE, PH 7.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.30550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.85850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.94400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 61.85850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.30550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.94400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 74 CE1 TYR A 74 CZ -0.093 REMARK 500 GLU A 89 CG GLU A 89 CD 0.100 REMARK 500 TYR A 118 CD1 TYR A 118 CE1 0.092 REMARK 500 GLU A 232 CG GLU A 232 CD 0.101 REMARK 500 GLU A 232 CD GLU A 232 OE1 0.084 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 62 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ASP A 122 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ARG A 157 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG A 157 NE - CZ - NH2 ANGL. DEV. = -4.6 DEGREES REMARK 500 ARG A 219 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 29 -123.29 52.25 REMARK 500 ARG A 131 -1.74 -145.43 REMARK 500 ASN A 220 65.35 -151.02 REMARK 500 PRO A 276 130.56 -37.92 REMARK 500 TRP B 60 -4.38 74.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1BMG RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BOVINE BETA-2-MICROGLOBULIN DBREF 2XFX A 1 276 UNP Q30291 Q30291_BOVIN 22 297 DBREF 2XFX B 1 99 UNP P01888 B2MG_BOVIN 20 118 DBREF 2XFX C 8 18 UNP Q4MYJ2 Q4MYJ2_THEPA 214 224 SEQADV 2XFX GLY A 277 UNP Q30291 EXPRESSION TAG SEQRES 1 A 277 GLY SER HIS SER LEU ARG TYR PHE HIS THR ALA VAL SER SEQRES 2 A 277 ARG PRO GLY LEU ARG GLU PRO LEU PHE ILE THR VAL GLY SEQRES 3 A 277 TYR VAL ASP ASP THR GLN PHE VAL ARG PHE ASP SER ASP SEQRES 4 A 277 ALA ARG ASP PRO ARG THR GLU PRO ARG GLN PRO TRP MET SEQRES 5 A 277 GLU LYS GLU GLY PRO GLU TYR TRP ASP ARG GLU THR GLN SEQRES 6 A 277 ILE SER LYS GLU ASN ALA LEU TRP TYR ARG GLU ALA LEU SEQRES 7 A 277 ASN ASN LEU ARG GLY TYR TYR ASN GLN SER GLU ALA GLY SEQRES 8 A 277 SER HIS THR LEU GLN GLU MET TYR GLY CYS ASP VAL GLY SEQRES 9 A 277 SER ASP GLY ARG LEU ARG ARG GLY TYR GLU GLN TYR GLY SEQRES 10 A 277 TYR ASP GLY ARG ASP TYR LEU ALA LEU ASN GLU ASP LEU SEQRES 11 A 277 ARG SER TRP THR ALA ALA ASP THR ALA ALA GLN ILE SER SEQRES 12 A 277 LYS ARG LYS MET GLU ALA ALA GLY ALA ALA GLU ARG PHE SEQRES 13 A 277 ARG ASN TYR LEU GLU GLY THR CYS VAL GLU TRP LEU ARG SEQRES 14 A 277 ARG TYR LEU GLU ASN GLY LYS ASP THR LEU LEU ARG ALA SEQRES 15 A 277 ASP PRO PRO LYS ALA HIS VAL THR ARG HIS PRO SER SER SEQRES 16 A 277 GLU HIS GLU VAL THR LEU ARG CYS TRP ALA LEU GLY PHE SEQRES 17 A 277 TYR PRO GLU GLU ILE SER LEU THR TRP GLN ARG ASN GLY SEQRES 18 A 277 GLU ASP GLN THR GLN ASP MET GLU LEU VAL GLU THR ARG SEQRES 19 A 277 PRO SER GLY ASP GLY ASN PHE GLN LYS TRP ALA ALA LEU SEQRES 20 A 277 VAL VAL PRO SER GLY GLU GLU GLN ARG TYR THR CYS ARG SEQRES 21 A 277 VAL GLN HIS GLU GLY LEU GLN GLU PRO LEU THR LEU ARG SEQRES 22 A 277 TRP GLU PRO GLY SEQRES 1 B 99 ALA ILE GLN ARG PRO PRO LYS ILE GLN VAL TYR SER ARG SEQRES 2 B 99 HIS PRO PRO GLU ASP GLY LYS PRO ASN TYR LEU ASN CYS SEQRES 3 B 99 TYR VAL TYR GLY PHE HIS PRO PRO GLN ILE GLU ILE ASP SEQRES 4 B 99 LEU LEU LYS ASN GLY GLU LYS ILE LYS SER GLU GLN SER SEQRES 5 B 99 ASP LEU SER PHE SER LYS ASP TRP SER PHE TYR LEU LEU SEQRES 6 B 99 SER HIS ALA GLU PHE THR PRO ASN SER LYS ASP GLN TYR SEQRES 7 B 99 SER CYS ARG VAL LYS HIS VAL THR LEU GLU GLN PRO ARG SEQRES 8 B 99 ILE VAL LYS TRP ASP ARG ASP LEU SEQRES 1 C 11 VAL GLY TYR PRO LYS VAL LYS GLU GLU MET LEU FORMUL 4 HOH *149(H2 O) HELIX 1 1 GLN A 49 GLU A 55 5 7 HELIX 2 2 GLY A 56 TYR A 85 1 30 HELIX 3 3 ASP A 137 ALA A 150 1 14 HELIX 4 4 GLY A 151 GLY A 162 1 12 HELIX 5 5 GLY A 162 GLY A 175 1 14 HELIX 6 6 GLY A 175 LEU A 180 1 6 HELIX 7 7 GLU A 253 TYR A 257 5 5 SHEET 1 AA 8 GLU A 46 PRO A 47 0 SHEET 2 AA 8 THR A 31 ASP A 37 -1 O ARG A 35 N GLU A 46 SHEET 3 AA 8 LEU A 21 VAL A 28 -1 O THR A 24 N PHE A 36 SHEET 4 AA 8 HIS A 3 VAL A 12 -1 O ARG A 6 N TYR A 27 SHEET 5 AA 8 THR A 94 VAL A 103 -1 O LEU A 95 N ALA A 11 SHEET 6 AA 8 LEU A 109 TYR A 118 -1 N ARG A 110 O ASP A 102 SHEET 7 AA 8 ARG A 121 LEU A 126 -1 O ARG A 121 N TYR A 118 SHEET 8 AA 8 TRP A 133 ALA A 135 -1 O THR A 134 N ALA A 125 SHEET 1 AB 4 LYS A 186 PRO A 193 0 SHEET 2 AB 4 GLU A 198 PHE A 208 -1 O THR A 200 N HIS A 192 SHEET 3 AB 4 PHE A 241 PRO A 250 -1 O PHE A 241 N PHE A 208 SHEET 4 AB 4 ARG A 234 PRO A 235 1 O ARG A 234 N GLN A 242 SHEET 1 AC 4 LYS A 186 PRO A 193 0 SHEET 2 AC 4 GLU A 198 PHE A 208 -1 O THR A 200 N HIS A 192 SHEET 3 AC 4 PHE A 241 PRO A 250 -1 O PHE A 241 N PHE A 208 SHEET 4 AC 4 GLU A 229 LEU A 230 -1 O GLU A 229 N ALA A 246 SHEET 1 AD 2 ARG A 234 PRO A 235 0 SHEET 2 AD 2 PHE A 241 PRO A 250 1 O GLN A 242 N ARG A 234 SHEET 1 AE 3 SER A 214 GLN A 218 0 SHEET 2 AE 3 THR A 258 GLN A 262 -1 O THR A 258 N GLN A 218 SHEET 3 AE 3 LEU A 270 LEU A 272 -1 O LEU A 270 N VAL A 261 SHEET 1 BA 4 LYS B 7 SER B 12 0 SHEET 2 BA 4 ASN B 22 PHE B 31 -1 O ASN B 25 N TYR B 11 SHEET 3 BA 4 PHE B 62 PHE B 70 -1 O PHE B 62 N PHE B 31 SHEET 4 BA 4 SER B 55 PHE B 56 1 O SER B 55 N TYR B 63 SHEET 1 BB 4 LYS B 7 SER B 12 0 SHEET 2 BB 4 ASN B 22 PHE B 31 -1 O ASN B 25 N TYR B 11 SHEET 3 BB 4 PHE B 62 PHE B 70 -1 O PHE B 62 N PHE B 31 SHEET 4 BB 4 GLU B 50 GLN B 51 -1 O GLU B 50 N HIS B 67 SHEET 1 BC 2 SER B 55 PHE B 56 0 SHEET 2 BC 2 PHE B 62 PHE B 70 1 O TYR B 63 N SER B 55 SHEET 1 BD 4 GLU B 45 LYS B 46 0 SHEET 2 BD 4 GLU B 37 LYS B 42 -1 O LYS B 42 N GLU B 45 SHEET 3 BD 4 TYR B 78 LYS B 83 -1 O SER B 79 N LEU B 41 SHEET 4 BD 4 ARG B 91 LYS B 94 -1 O ARG B 91 N VAL B 82 SSBOND 1 CYS A 101 CYS A 164 1555 1555 2.11 SSBOND 2 CYS A 203 CYS A 259 1555 1555 2.03 SSBOND 3 CYS B 26 CYS B 80 1555 1555 2.06 CISPEP 1 TYR A 209 PRO A 210 0 4.28 CISPEP 2 HIS B 32 PRO B 33 0 -1.08 CRYST1 44.611 97.888 123.717 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022416 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010216 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008083 0.00000