HEADER CHAPERONE 30-MAY-10 2XG4 TITLE E. COLI P PILUS CHAPERONE-SUBUNIT COMPLEX PAPD-PAPH BOUND TO PILUS TITLE 2 BIOGENESIS INHIBITOR, PILICIDE 2C COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHAPERONE PROTEIN PAPD; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PAPD; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: C-TERMINAL 6XHIS TAG; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: PAP FIMBRIAL MINOR PILIN PROTEIN; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: PAPH; COMPND 11 ENGINEERED: YES; COMPND 12 OTHER_DETAILS: N-TERMINAL RESIDUES 1-22 DELETED REMOVED. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 STRAIN: J96; SOURCE 5 ATCC: 700336; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: C600; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PTRC99A; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 12 ORGANISM_TAXID: 562; SOURCE 13 STRAIN: J96; SOURCE 14 ATCC: 700336; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 17 EXPRESSION_SYSTEM_STRAIN: C600; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PTRC99A KEYWDS CHAPERONE, CHAPERONE-SURFACE ACTIVE PROTEIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.REMAUT,G.PHAN,F.BUELENS,E.CHORELL,J.S.PINKNER,S.EDVINSSON, AUTHOR 2 F.ALMQVIST,S.J.HULTGREN,G.WAKSMAN REVDAT 3 20-DEC-23 2XG4 1 REMARK LINK REVDAT 2 03-NOV-10 2XG4 1 KEYWDS JRNL REMARK HETSYN REVDAT 1 14-JUL-10 2XG4 0 JRNL AUTH E.CHORELL,J.S.PINKNER,G.PHAN,S.EDVINSSON,F.BUELENS,H.REMAUT, JRNL AUTH 2 G.WAKSMAN,S.J.HULTGREN,F.ALMQVIST JRNL TITL DESIGN AND SYNTHESIS OF C-2 SUBSTITUTED THIAZOLO AND JRNL TITL 2 DIHYDROTHIAZOLO RING-FUSED 2-PYRIDONES: PILICIDES WITH JRNL TITL 3 INCREASED ANTIVIRULENCE ACTIVITY. JRNL REF J.MED.CHEM. V. 53 5690 2010 JRNL REFN ISSN 0022-2623 JRNL PMID 20586493 JRNL DOI 10.1021/JM100470T REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0088 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 22814 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1290 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1744 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.30 REMARK 3 BIN R VALUE (WORKING SET) : 0.2090 REMARK 3 BIN FREE R VALUE SET COUNT : 89 REMARK 3 BIN FREE R VALUE : 0.2350 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2800 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 41 REMARK 3 SOLVENT ATOMS : 83 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.12000 REMARK 3 B22 (A**2) : -0.31000 REMARK 3 B33 (A**2) : -0.81000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.217 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.185 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.130 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.131 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.936 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.921 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2891 ; 0.026 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3934 ; 1.941 ; 1.981 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 363 ; 6.546 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 131 ;33.635 ;23.969 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 464 ;17.603 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;19.257 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 437 ; 0.139 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2233 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1819 ; 1.096 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2928 ; 2.045 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1072 ; 3.581 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1003 ; 5.893 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 25 B 173 REMARK 3 ORIGIN FOR THE GROUP (A): 16.9560 24.8230 -10.2270 REMARK 3 T TENSOR REMARK 3 T11: 0.0967 T22: 0.0942 REMARK 3 T33: 0.0542 T12: -0.0905 REMARK 3 T13: 0.0173 T23: -0.0107 REMARK 3 L TENSOR REMARK 3 L11: 1.2575 L22: 0.9330 REMARK 3 L33: 2.9564 L12: 0.3270 REMARK 3 L13: -1.3356 L23: -0.2758 REMARK 3 S TENSOR REMARK 3 S11: -0.0475 S12: 0.1010 S13: -0.0104 REMARK 3 S21: -0.1397 S22: 0.0759 S23: -0.0499 REMARK 3 S31: -0.2405 S32: 0.1935 S33: -0.0284 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 119 REMARK 3 ORIGIN FOR THE GROUP (A): 8.3270 10.2160 3.5410 REMARK 3 T TENSOR REMARK 3 T11: 0.0292 T22: 0.0071 REMARK 3 T33: 0.0588 T12: -0.0034 REMARK 3 T13: -0.0035 T23: -0.0046 REMARK 3 L TENSOR REMARK 3 L11: 0.8438 L22: 1.3433 REMARK 3 L33: 3.6991 L12: 0.1965 REMARK 3 L13: 1.0222 L23: -0.8522 REMARK 3 S TENSOR REMARK 3 S11: 0.0305 S12: 0.0057 S13: -0.1180 REMARK 3 S21: -0.0334 S22: 0.0489 S23: 0.0031 REMARK 3 S31: 0.1484 S32: 0.0242 S33: -0.0793 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 120 A 216 REMARK 3 ORIGIN FOR THE GROUP (A): 22.8410 25.6780 21.7710 REMARK 3 T TENSOR REMARK 3 T11: 0.0705 T22: 0.0876 REMARK 3 T33: 0.0476 T12: -0.0552 REMARK 3 T13: -0.0358 T23: -0.0049 REMARK 3 L TENSOR REMARK 3 L11: 1.8342 L22: 2.6679 REMARK 3 L33: 1.4895 L12: 1.3243 REMARK 3 L13: 0.8352 L23: 0.9016 REMARK 3 S TENSOR REMARK 3 S11: 0.0144 S12: -0.0239 S13: -0.0523 REMARK 3 S21: 0.1366 S22: 0.0434 S23: -0.1718 REMARK 3 S31: -0.1308 S32: 0.2134 S33: -0.0579 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS.ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B FACTORS REMARK 3 ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U FACTORS. REMARK 4 REMARK 4 2XG4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-MAY-10. REMARK 100 THE DEPOSITION ID IS D_1290044120. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAR-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98023 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24104 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 0.40000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 7.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 2J2Z REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.01 M COBALT CHLORIDE, 0.1 M MES PH REMARK 280 6.5 AND 1.8 M AMMONIUM SULPHATE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.31950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 41.31950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 52.05000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 74.36500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 52.05000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 74.36500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 41.31950 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 52.05000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 74.36500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 41.31950 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 52.05000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 74.36500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CO CO B1174 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 218 REMARK 465 GLY B 1 REMARK 465 PRO B 2 REMARK 465 PHE B 3 REMARK 465 PRO B 4 REMARK 465 PRO B 5 REMARK 465 PRO B 6 REMARK 465 GLY B 7 REMARK 465 MET B 8 REMARK 465 SER B 9 REMARK 465 LEU B 10 REMARK 465 PRO B 11 REMARK 465 GLU B 12 REMARK 465 TYR B 13 REMARK 465 TRP B 14 REMARK 465 GLY B 15 REMARK 465 GLU B 16 REMARK 465 GLU B 17 REMARK 465 HIS B 18 REMARK 465 VAL B 19 REMARK 465 TRP B 20 REMARK 465 TRP B 21 REMARK 465 ASP B 22 REMARK 465 GLY B 23 REMARK 465 ARG B 24 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 16 CG CD CE NZ REMARK 470 LYS A 27 CD CE NZ REMARK 470 LYS A 182 CG CD CE NZ REMARK 470 LYS A 216 CG CD CE NZ REMARK 470 GLU A 217 CA C O CB CG CD OE1 REMARK 470 GLU A 217 OE2 REMARK 470 GLU B 41 CG CD OE1 OE2 REMARK 470 GLU B 51 CG CD OE1 OE2 REMARK 470 ARG B 55 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 67 CG CD CE NZ REMARK 470 GLN B 80 CG CD OE1 NE2 REMARK 470 ARG B 98 CD NE CZ NH1 NH2 REMARK 470 GLN B 110 CG CD OE1 NE2 REMARK 470 LYS B 112 CG CD CE NZ REMARK 470 ASN B 140 CG OD1 ND2 REMARK 470 GLU B 141 CG CD OE1 OE2 REMARK 470 LYS B 155 CG CD CE NZ REMARK 470 LYS B 156 CG CD CE NZ REMARK 470 PHE B 163 CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2013 O HOH A 2038 1.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 144 CG GLU A 144 CD 0.091 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 6 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 ASP B 48 CB - CG - OD2 ANGL. DEV. = 7.7 DEGREES REMARK 500 ARG B 89 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG B 89 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG B 98 CA - CB - CG ANGL. DEV. = 13.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 46 -23.84 -140.52 REMARK 500 GLU A 98 30.42 -89.81 REMARK 500 LYS A 215 112.52 -38.89 REMARK 500 ASN B 140 42.75 17.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 XC2 A 1218 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO B1174 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 28 NE2 REMARK 620 2 HIS B 28 NE2 94.1 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE XC2 A 1218 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO B 1174 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 3001 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2J2Z RELATED DB: PDB REMARK 900 X-RAY STRUCTURE OF THE CHAPERONE PAPD IN COMPLEX WITH THE PILUS REMARK 900 TERMINATOR SUBUNIT PAPH AT 2.3 ANGSTROM RESOLUTION REMARK 900 RELATED ID: 1QPP RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURES OF SELF CAPPING PAPD CHAPERONE HOMODIMERS REMARK 900 RELATED ID: 1QPX RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURES OF SELF-CAPPING PAPD CHAPERONE HOMODIMERS REMARK 900 RELATED ID: 2WMP RELATED DB: PDB REMARK 900 STRUCTURE OF THE E. COLI CHAPERONE PAPD IN COMPLEX WITH THE PILIN REMARK 900 DOMAIN OF THE PAPGII ADHESIN REMARK 900 RELATED ID: 3DPA RELATED DB: PDB REMARK 900 PAPD REMARK 900 RELATED ID: 1PDK RELATED DB: PDB REMARK 900 PAPD-PAPK CHAPERONE-PILUS SUBUNIT COMPLEX FROM E.COLI P PILUS REMARK 900 RELATED ID: 1N0L RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE PAPD CHAPERONE (C- TERMINALLY 6XHISTIDINE- REMARK 900 TAGGED) BOUND TO THE PAPE PILUS SUBUNIT (N-TERMINAL-DELETED) FROM REMARK 900 UROPATHOGENIC E. COLI REMARK 900 RELATED ID: 2XG5 RELATED DB: PDB REMARK 900 E. COLI P PILUS CHAPERONE-SUBUNIT COMPLEX PAPD-PAPH BOUND TO PILUS REMARK 900 BIOGENESIS INHIBITOR, PILICIDE 5D DBREF 2XG4 A 1 218 UNP P15319 PAPD_ECOLX 22 239 DBREF 2XG4 B 1 173 UNP P07111 PAPH_ECOLX 23 195 SEQRES 1 A 218 ALA VAL SER LEU ASP ARG THR ARG ALA VAL PHE ASP GLY SEQRES 2 A 218 SER GLU LYS SER MET THR LEU ASP ILE SER ASN ASP ASN SEQRES 3 A 218 LYS GLN LEU PRO TYR LEU ALA GLN ALA TRP ILE GLU ASN SEQRES 4 A 218 GLU ASN GLN GLU LYS ILE ILE THR GLY PRO VAL ILE ALA SEQRES 5 A 218 THR PRO PRO VAL GLN ARG LEU GLU PRO GLY ALA LYS SER SEQRES 6 A 218 MET VAL ARG LEU SER THR THR PRO ASP ILE SER LYS LEU SEQRES 7 A 218 PRO GLN ASP ARG GLU SER LEU PHE TYR PHE ASN LEU ARG SEQRES 8 A 218 GLU ILE PRO PRO ARG SER GLU LYS ALA ASN VAL LEU GLN SEQRES 9 A 218 ILE ALA LEU GLN THR LYS ILE LYS LEU PHE TYR ARG PRO SEQRES 10 A 218 ALA ALA ILE LYS THR ARG PRO ASN GLU VAL TRP GLN ASP SEQRES 11 A 218 GLN LEU ILE LEU ASN LYS VAL SER GLY GLY TYR ARG ILE SEQRES 12 A 218 GLU ASN PRO THR PRO TYR TYR VAL THR VAL ILE GLY LEU SEQRES 13 A 218 GLY GLY SER GLU LYS GLN ALA GLU GLU GLY GLU PHE GLU SEQRES 14 A 218 THR VAL MET LEU SER PRO ARG SER GLU GLN THR VAL LYS SEQRES 15 A 218 SER ALA ASN TYR ASN THR PRO TYR LEU SER TYR ILE ASN SEQRES 16 A 218 ASP TYR GLY GLY ARG PRO VAL LEU SER PHE ILE CYS ASN SEQRES 17 A 218 GLY SER ARG CYS SER VAL LYS LYS GLU LYS SEQRES 1 B 173 GLY PRO PHE PRO PRO PRO GLY MET SER LEU PRO GLU TYR SEQRES 2 B 173 TRP GLY GLU GLU HIS VAL TRP TRP ASP GLY ARG ALA ALA SEQRES 3 B 173 PHE HIS GLY GLU VAL VAL ARG PRO ALA CYS THR LEU ALA SEQRES 4 B 173 MET GLU ASP ALA TRP GLN ILE ILE ASP MET GLY GLU THR SEQRES 5 B 173 PRO VAL ARG ASP LEU GLN ASN GLY PHE SER GLY PRO GLU SEQRES 6 B 173 ARG LYS PHE SER LEU ARG LEU ARG ASN CYS GLU PHE ASN SEQRES 7 B 173 SER GLN GLY GLY ASN LEU PHE SER ASP SER ARG ILE ARG SEQRES 8 B 173 VAL THR PHE ASP GLY VAL ARG GLY GLU THR PRO ASP LYS SEQRES 9 B 173 PHE ASN LEU SER GLY GLN ALA LYS GLY ILE ASN LEU GLN SEQRES 10 B 173 ILE ALA ASP VAL ARG GLY ASN ILE ALA ARG ALA GLY LYS SEQRES 11 B 173 VAL MET PRO ALA ILE PRO LEU THR GLY ASN GLU GLU ALA SEQRES 12 B 173 LEU ASP TYR THR LEU ARG ILE VAL ARG ASN GLY LYS LYS SEQRES 13 B 173 LEU GLU ALA GLY ASN TYR PHE ALA VAL LEU GLY PHE ARG SEQRES 14 B 173 VAL ASP TYR GLU HET XC2 A1218 34 HET CO B1174 1 HET GOL B3001 6 HETNAM XC2 (3R)-8-CYCLOPROPYL-6-(MORPHOLIN-4-YLMETHYL)-7-(1- HETNAM 2 XC2 NAPHTHYLMETHYL)-5-OXO-2,3-DIHYDRO-5H-[1,3]THIAZOLO[3, HETNAM 3 XC2 2-A]PYRIDINE-3-CARBOXYLIC ACID HETNAM CO COBALT (II) ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 XC2 C27 H28 N2 O4 S FORMUL 4 CO CO 2+ FORMUL 5 GOL C3 H8 O3 FORMUL 6 HOH *83(H2 O) HELIX 1 1 PRO A 73 LEU A 78 5 6 HELIX 2 2 PRO A 117 LYS A 121 5 5 HELIX 3 3 TRP A 128 LEU A 132 5 5 HELIX 4 4 SER A 159 GLY A 166 1 8 HELIX 5 5 PRO B 53 ASN B 59 1 7 SHEET 1 AA 4 VAL A 2 LEU A 4 0 SHEET 2 AA 4 SER A 17 ASN A 24 -1 O SER A 23 N SER A 3 SHEET 3 AA 4 LYS A 64 THR A 71 -1 O SER A 65 N ILE A 22 SHEET 4 AA 4 VAL A 50 THR A 53 -1 O ILE A 51 N SER A 70 SHEET 1 AB 2 ARG A 8 ASP A 12 0 SHEET 2 AB 2 VAL A 102 ARG A 116 -1 O LYS A 112 N ALA A 9 SHEET 1 AC 2 LYS A 44 ILE A 45 0 SHEET 2 AC 2 TYR A 31 GLU A 38 -1 O ILE A 37 N ILE A 45 SHEET 1 AD 2 VAL A 56 LEU A 59 0 SHEET 2 AD 2 TYR A 31 GLU A 38 -1 O TYR A 31 N LEU A 59 SHEET 1 BA 2 ILE B 46 ASP B 48 0 SHEET 2 BA 2 VAL A 102 ARG A 116 1 O LEU A 103 N ILE B 47 SHEET 1 BB 2 ILE B 90 ASP B 95 0 SHEET 2 BB 2 TYR B 162 TYR B 172 -1 O GLY B 167 N ASP B 95 SHEET 1 BC 2 SER B 108 GLY B 109 0 SHEET 2 BC 2 TYR B 162 TYR B 172 1 O PHE B 163 N SER B 108 SHEET 1 AE 8 VAL A 171 LEU A 173 0 SHEET 2 AE 8 VAL A 151 GLY A 157 -1 O VAL A 151 N LEU A 173 SHEET 3 AE 8 TYR A 190 ILE A 194 -1 O TYR A 190 N GLY A 157 SHEET 4 AE 8 VAL A 202 ASN A 208 -1 O LEU A 203 N LEU A 191 SHEET 5 AE 8 ARG A 211 VAL A 214 -1 O ARG A 211 N ASN A 208 SHEET 6 AE 8 ILE A 133 VAL A 137 -1 O LEU A 134 N CYS A 212 SHEET 7 AE 8 GLY A 140 ASN A 145 -1 O GLY A 140 N VAL A 137 SHEET 8 AE 8 SER A 177 LYS A 182 -1 O SER A 177 N ASN A 145 SHEET 1 BD 5 THR B 37 ALA B 39 0 SHEET 2 BD 5 ARG B 66 ARG B 73 -1 O ARG B 71 N ALA B 39 SHEET 3 BD 5 ALA B 143 ARG B 152 -1 O LEU B 144 N LEU B 70 SHEET 4 BD 5 ILE B 114 ASP B 120 -1 O ASN B 115 N VAL B 151 SHEET 5 BD 5 PHE B 105 ASN B 106 -1 O PHE B 105 N LEU B 116 SSBOND 1 CYS A 207 CYS A 212 1555 1555 2.21 SSBOND 2 CYS B 36 CYS B 75 1555 1555 2.14 LINK NE2 HIS B 28 CO CO B1174 1555 1555 2.21 LINK NE2 HIS B 28 CO CO B1174 3555 1555 2.23 CISPEP 1 GLY A 48 PRO A 49 0 8.36 CISPEP 2 THR A 53 PRO A 54 0 -7.46 SITE 1 AC1 7 LEU A 32 ILE A 51 THR A 53 SER A 70 SITE 2 AC1 7 THR A 71 THR A 72 PRO A 73 SITE 1 AC2 1 HIS B 28 SITE 1 AC3 7 PHE B 85 ASP B 120 VAL B 121 LEU B 137 SITE 2 AC3 7 LEU B 144 ASP B 145 TYR B 146 CRYST1 104.100 148.730 82.639 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009606 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006724 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012101 0.00000