HEADER CHAPERONE 30-MAY-10 2XG5 TITLE E. COLI P PILUS CHAPERONE-SUBUNIT COMPLEX PAPD-PAPH BOUND TO PILUS TITLE 2 BIOGENESIS INHIBITOR, PILICIDE 5D COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHAPERONE PROTEIN PAPD; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PAPD; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: C-TERMINAL 6XHIS TAG; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: PAP FIMBRIAL MINOR PILIN PROTEIN; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: PAPH; COMPND 11 ENGINEERED: YES; COMPND 12 OTHER_DETAILS: N-TERMINAL RESIDUES 1-22 DELETED SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 STRAIN: J96; SOURCE 5 ATCC: 700336; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: C600; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PTRC99A; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 12 ORGANISM_TAXID: 562; SOURCE 13 STRAIN: J96; SOURCE 14 ATCC: 700336; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 17 EXPRESSION_SYSTEM_STRAIN: C600; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PTRC99A KEYWDS CHAPERONE, CHAPERONE-SURFACE ACTIVE PROTEIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.REMAUT,G.PHAN,F.BUELENS,E.CHORELL,J.S.PINKNER,S.EDVINSSON, AUTHOR 2 F.ALMQVIST,S.J.HULTGREN,G.WAKSMAN REVDAT 3 20-DEC-23 2XG5 1 REMARK LINK REVDAT 2 03-NOV-10 2XG5 1 KEYWDS JRNL REMARK HETSYN REVDAT 1 14-JUL-10 2XG5 0 JRNL AUTH E.CHORELL,J.S.PINKNER,G.PHAN,S.EDVINSSON,F.BUELENS,H.REMAUT, JRNL AUTH 2 G.WAKSMAN,S.J.HULTGREN,F.ALMQVIST JRNL TITL DESIGN AND SYNTHESIS OF C-2 SUBSTITUTED THIAZOLO AND JRNL TITL 2 DIHYDROTHIAZOLO RING-FUSED 2-PYRIDONES: PILICIDES WITH JRNL TITL 3 INCREASED ANTIVIRULENCE ACTIVITY. JRNL REF J.MED.CHEM. V. 53 5690 2010 JRNL REFN ISSN 0022-2623 JRNL PMID 20586493 JRNL DOI 10.1021/JM100470T REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0088 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 89.5 REMARK 3 NUMBER OF REFLECTIONS : 37302 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1970 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2780 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.57 REMARK 3 BIN R VALUE (WORKING SET) : 0.1790 REMARK 3 BIN FREE R VALUE SET COUNT : 159 REMARK 3 BIN FREE R VALUE : 0.2360 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2789 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 79 REMARK 3 SOLVENT ATOMS : 202 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 8.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.08000 REMARK 3 B22 (A**2) : -0.04000 REMARK 3 B33 (A**2) : -0.04000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.141 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.131 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.078 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.909 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.938 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2974 ; 0.026 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4054 ; 1.828 ; 2.001 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 372 ; 6.224 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 133 ;31.732 ;23.910 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 476 ;13.996 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;13.429 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 448 ; 0.154 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2297 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1827 ; 0.928 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2951 ; 1.326 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1147 ; 2.190 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1091 ; 2.993 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 25 B 173 REMARK 3 ORIGIN FOR THE GROUP (A): -34.7350 -24.7970 10.5440 REMARK 3 T TENSOR REMARK 3 T11: 0.2130 T22: 0.1814 REMARK 3 T33: 0.1669 T12: 0.1100 REMARK 3 T13: -0.0399 T23: -0.0215 REMARK 3 L TENSOR REMARK 3 L11: 1.2369 L22: 0.8763 REMARK 3 L33: 3.0082 L12: -0.6697 REMARK 3 L13: 1.0749 L23: -1.2153 REMARK 3 S TENSOR REMARK 3 S11: -0.0216 S12: -0.1825 S13: -0.0609 REMARK 3 S21: 0.1436 S22: 0.0692 S23: -0.1117 REMARK 3 S31: 0.2557 S32: 0.2281 S33: -0.0477 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 119 REMARK 3 ORIGIN FOR THE GROUP (A): -43.4980 -10.1510 -3.1800 REMARK 3 T TENSOR REMARK 3 T11: 0.0063 T22: 0.0275 REMARK 3 T33: 0.0609 T12: -0.0008 REMARK 3 T13: -0.0023 T23: -0.0092 REMARK 3 L TENSOR REMARK 3 L11: 0.9460 L22: 1.6196 REMARK 3 L33: 2.9750 L12: -0.2731 REMARK 3 L13: -0.7986 L23: -0.2728 REMARK 3 S TENSOR REMARK 3 S11: 0.0486 S12: -0.0382 S13: 0.1036 REMARK 3 S21: 0.0029 S22: 0.0116 S23: -0.0274 REMARK 3 S31: -0.0773 S32: 0.0460 S33: -0.0601 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 120 A 216 REMARK 3 ORIGIN FOR THE GROUP (A): -28.9210 -25.8650 -21.7590 REMARK 3 T TENSOR REMARK 3 T11: 0.0793 T22: 0.1361 REMARK 3 T33: 0.1151 T12: 0.0603 REMARK 3 T13: 0.0275 T23: -0.0114 REMARK 3 L TENSOR REMARK 3 L11: 2.3532 L22: 3.4326 REMARK 3 L33: 1.8240 L12: -1.4681 REMARK 3 L13: -0.7867 L23: 0.6371 REMARK 3 S TENSOR REMARK 3 S11: 0.0665 S12: 0.0579 S13: -0.0175 REMARK 3 S21: -0.0888 S22: -0.0102 S23: -0.3539 REMARK 3 S31: 0.1677 S32: 0.2765 S33: -0.0563 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. SIDE CHAIN ATOMS FOR WHICH NO DENSITY IS OBSERVED ARE REMARK 3 MODELED WITH AS LIKELY CONFORMER AND WITH OCCUPANCY SET TO 0.01 REMARK 3 ATOM RECORD. CONTAINS SUM OF TLS AND RESIDUAL B FACTORS. ANISOU REMARK 3 RECORD CONTAINS SUM OF TLS AND RESIDUAL U FACTORS. REMARK 4 REMARK 4 2XG5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-MAY-10. REMARK 100 THE DEPOSITION ID IS D_1290044121. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37302 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.5 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 92.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.10000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 7.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 2J2Z REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.01 M COBALT CHLORIDE, 0.1 M MES PH REMARK 280 6.5 AND 1.8 M AMMONIUM SULPHATE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.45000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 41.45000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 51.80500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 74.91500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 51.80500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 74.91500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 41.45000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 51.80500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 74.91500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 41.45000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 51.80500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 74.91500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 218 REMARK 465 GLY B 1 REMARK 465 PRO B 2 REMARK 465 PHE B 3 REMARK 465 PRO B 4 REMARK 465 PRO B 5 REMARK 465 PRO B 6 REMARK 465 GLY B 7 REMARK 465 MET B 8 REMARK 465 SER B 9 REMARK 465 LEU B 10 REMARK 465 PRO B 11 REMARK 465 GLU B 12 REMARK 465 TYR B 13 REMARK 465 TRP B 14 REMARK 465 GLY B 15 REMARK 465 GLU B 16 REMARK 465 GLU B 17 REMARK 465 HIS B 18 REMARK 465 VAL B 19 REMARK 465 TRP B 20 REMARK 465 TRP B 21 REMARK 465 ASP B 22 REMARK 465 GLY B 23 REMARK 465 ARG B 24 REMARK 465 GLY B 139 REMARK 465 ASN B 140 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 16 CG CD CE NZ REMARK 470 LYS A 27 CD CE NZ REMARK 470 ARG A 96 CD NE CZ NH1 NH2 REMARK 470 LYS A 182 CG CD CE NZ REMARK 470 LYS A 216 CG CD CE NZ REMARK 470 GLU A 217 CA C O CB CG CD OE1 REMARK 470 GLU A 217 OE2 REMARK 470 GLU B 41 CG CD OE1 OE2 REMARK 470 GLU B 51 CG CD OE1 OE2 REMARK 470 ARG B 55 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 67 CG CD CE NZ REMARK 470 GLN B 80 CG CD OE1 NE2 REMARK 470 ARG B 98 NE CZ NH1 NH2 REMARK 470 GLN B 110 CG CD OE1 NE2 REMARK 470 LYS B 112 CG CD CE NZ REMARK 470 GLU B 141 CG CD OE1 OE2 REMARK 470 LYS B 155 CG CD CE NZ REMARK 470 LYS B 156 CG CD CE NZ REMARK 470 PHE B 163 N CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2031 O HOH A 2032 1.41 REMARK 500 O HOH A 2036 O HOH A 2037 1.60 REMARK 500 O HOH A 2001 O HOH A 2017 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PHE B 163 CG PHE B 163 CD2 0.139 REMARK 500 PHE B 163 CG PHE B 163 CD1 0.166 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 48 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 ARG B 91 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG B 91 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG B 98 CA - CB - CG ANGL. DEV. = 14.3 DEGREES REMARK 500 PHE B 163 CB - CG - CD2 ANGL. DEV. = -7.6 DEGREES REMARK 500 PHE B 163 CB - CG - CD1 ANGL. DEV. = -9.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 46 -42.17 -132.04 REMARK 500 GLU A 98 35.82 -99.30 REMARK 500 GLU B 142 21.05 -75.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 - (EC5): RADIOLYSIS PRODUCT OF EC2 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO B1175 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 28 NE2 REMARK 620 2 HIS B 28 NE2 97.1 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGO B 1174 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1218 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO B 1175 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EC2 A 1219 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EC5 A 1220 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2J2Z RELATED DB: PDB REMARK 900 X-RAY STRUCTURE OF THE CHAPERONE PAPD IN COMPLEX WITH THE PILUS REMARK 900 TERMINATOR SUBUNIT PAPH AT 2.3 ANGSTROM RESOLUTION REMARK 900 RELATED ID: 1QPP RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURES OF SELF CAPPING PAPD CHAPERONE HOMODIMERS REMARK 900 RELATED ID: 1QPX RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURES OF SELF-CAPPING PAPD CHAPERONE HOMODIMERS REMARK 900 RELATED ID: 2WMP RELATED DB: PDB REMARK 900 STRUCTURE OF THE E. COLI CHAPERONE PAPD IN COMPLEX WITH THE PILIN REMARK 900 DOMAIN OF THE PAPGII ADHESIN REMARK 900 RELATED ID: 2XG4 RELATED DB: PDB REMARK 900 E. COLI P PILUS CHAPERONE-SUBUNIT COMPLEX PAPD-PAPH BOUND TO PILUS REMARK 900 BIOGENESIS INHIBITOR, PILICIDE 2C REMARK 900 RELATED ID: 3DPA RELATED DB: PDB REMARK 900 PAPD REMARK 900 RELATED ID: 1PDK RELATED DB: PDB REMARK 900 PAPD-PAPK CHAPERONE-PILUS SUBUNIT COMPLEX FROM E.COLI P PILUS REMARK 900 RELATED ID: 1N0L RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE PAPD CHAPERONE (C- TERMINALLY 6XHISTIDINE- REMARK 900 TAGGED) BOUND TO THE PAPE PILUS SUBUNIT (N-TERMINAL-DELETED) FROM REMARK 900 UROPATHOGENIC E. COLI DBREF 2XG5 A 1 218 UNP P15319 PAPD_ECOLX 22 239 DBREF 2XG5 B 1 173 UNP P07111 PAPH_ECOLX 23 195 SEQRES 1 A 218 ALA VAL SER LEU ASP ARG THR ARG ALA VAL PHE ASP GLY SEQRES 2 A 218 SER GLU LYS SER MET THR LEU ASP ILE SER ASN ASP ASN SEQRES 3 A 218 LYS GLN LEU PRO TYR LEU ALA GLN ALA TRP ILE GLU ASN SEQRES 4 A 218 GLU ASN GLN GLU LYS ILE ILE THR GLY PRO VAL ILE ALA SEQRES 5 A 218 THR PRO PRO VAL GLN ARG LEU GLU PRO GLY ALA LYS SER SEQRES 6 A 218 MET VAL ARG LEU SER THR THR PRO ASP ILE SER LYS LEU SEQRES 7 A 218 PRO GLN ASP ARG GLU SER LEU PHE TYR PHE ASN LEU ARG SEQRES 8 A 218 GLU ILE PRO PRO ARG SER GLU LYS ALA ASN VAL LEU GLN SEQRES 9 A 218 ILE ALA LEU GLN THR LYS ILE LYS LEU PHE TYR ARG PRO SEQRES 10 A 218 ALA ALA ILE LYS THR ARG PRO ASN GLU VAL TRP GLN ASP SEQRES 11 A 218 GLN LEU ILE LEU ASN LYS VAL SER GLY GLY TYR ARG ILE SEQRES 12 A 218 GLU ASN PRO THR PRO TYR TYR VAL THR VAL ILE GLY LEU SEQRES 13 A 218 GLY GLY SER GLU LYS GLN ALA GLU GLU GLY GLU PHE GLU SEQRES 14 A 218 THR VAL MET LEU SER PRO ARG SER GLU GLN THR VAL LYS SEQRES 15 A 218 SER ALA ASN TYR ASN THR PRO TYR LEU SER TYR ILE ASN SEQRES 16 A 218 ASP TYR GLY GLY ARG PRO VAL LEU SER PHE ILE CYS ASN SEQRES 17 A 218 GLY SER ARG CYS SER VAL LYS LYS GLU LYS SEQRES 1 B 173 GLY PRO PHE PRO PRO PRO GLY MET SER LEU PRO GLU TYR SEQRES 2 B 173 TRP GLY GLU GLU HIS VAL TRP TRP ASP GLY ARG ALA ALA SEQRES 3 B 173 PHE HIS GLY GLU VAL VAL ARG PRO ALA CYS THR LEU ALA SEQRES 4 B 173 MET GLU ASP ALA TRP GLN ILE ILE ASP MET GLY GLU THR SEQRES 5 B 173 PRO VAL ARG ASP LEU GLN ASN GLY PHE SER GLY PRO GLU SEQRES 6 B 173 ARG LYS PHE SER LEU ARG LEU ARG ASN CYS GLU PHE ASN SEQRES 7 B 173 SER GLN GLY GLY ASN LEU PHE SER ASP SER ARG ILE ARG SEQRES 8 B 173 VAL THR PHE ASP GLY VAL ARG GLY GLU THR PRO ASP LYS SEQRES 9 B 173 PHE ASN LEU SER GLY GLN ALA LYS GLY ILE ASN LEU GLN SEQRES 10 B 173 ILE ALA ASP VAL ARG GLY ASN ILE ALA ARG ALA GLY LYS SEQRES 11 B 173 VAL MET PRO ALA ILE PRO LEU THR GLY ASN GLU GLU ALA SEQRES 12 B 173 LEU ASP TYR THR LEU ARG ILE VAL ARG ASN GLY LYS LYS SEQRES 13 B 173 LEU GLU ALA GLY ASN TYR PHE ALA VAL LEU GLY PHE ARG SEQRES 14 B 173 VAL ASP TYR GLU HET GOL A1218 6 HET EC2 A1219 33 HET EC5 A1220 34 HET PGO B1174 5 HET CO B1175 1 HETNAM GOL GLYCEROL HETNAM EC2 (2R,3R)-8-CYCLOPROPYL-7-(NAPHTHALEN-1-YLMETHYL)-5-OXO- HETNAM 2 EC2 2-PHENYL-2,3-DIHYDRO-5H-[1,3]THIAZOLO[3,2-A]PYRIDINE- HETNAM 3 EC2 3-CARBOXYLIC ACID HETNAM EC5 (2R)-2-[5-CYCLOPROPYL-6-(HYDROXYSULFANYL)-4- HETNAM 2 EC5 (NAPHTHALEN-1-YLMETHYL)-2-OXOPYRIDIN-1(2H)-YL]-3- HETNAM 3 EC5 PHENYLPROPANOIC ACID HETNAM PGO S-1,2-PROPANEDIOL HETNAM CO COBALT (II) ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL C3 H8 O3 FORMUL 4 EC2 C28 H23 N O3 S FORMUL 5 EC5 C28 H25 N O4 S FORMUL 6 PGO C3 H8 O2 FORMUL 7 CO CO 2+ FORMUL 8 HOH *202(H2 O) HELIX 1 1 PRO A 73 LEU A 78 5 6 HELIX 2 2 PRO A 117 LYS A 121 5 5 HELIX 3 3 TRP A 128 LEU A 132 5 5 HELIX 4 4 SER A 159 GLY A 166 1 8 HELIX 5 5 PRO B 53 ASN B 59 1 7 SHEET 1 AA 4 VAL A 2 LEU A 4 0 SHEET 2 AA 4 SER A 17 ASN A 24 -1 O SER A 23 N SER A 3 SHEET 3 AA 4 LYS A 64 THR A 71 -1 O SER A 65 N ILE A 22 SHEET 4 AA 4 VAL A 50 THR A 53 -1 O ILE A 51 N SER A 70 SHEET 1 AB 2 ARG A 8 ASP A 12 0 SHEET 2 AB 2 VAL A 102 ARG A 116 -1 O LYS A 112 N ALA A 9 SHEET 1 AC 2 LYS A 44 ILE A 45 0 SHEET 2 AC 2 TYR A 31 GLU A 38 -1 O ILE A 37 N ILE A 45 SHEET 1 AD 2 VAL A 56 LEU A 59 0 SHEET 2 AD 2 TYR A 31 GLU A 38 -1 O TYR A 31 N LEU A 59 SHEET 1 BA 2 ILE B 46 ASP B 48 0 SHEET 2 BA 2 VAL A 102 ARG A 116 1 O LEU A 103 N ILE B 47 SHEET 1 BB 2 ILE B 90 ASP B 95 0 SHEET 2 BB 2 TYR B 162 TYR B 172 -1 O GLY B 167 N ASP B 95 SHEET 1 BC 2 SER B 108 GLY B 109 0 SHEET 2 BC 2 TYR B 162 TYR B 172 1 O PHE B 163 N SER B 108 SHEET 1 AE 8 VAL A 171 LEU A 173 0 SHEET 2 AE 8 VAL A 151 GLY A 157 -1 O VAL A 151 N LEU A 173 SHEET 3 AE 8 TYR A 190 ILE A 194 -1 O TYR A 190 N GLY A 157 SHEET 4 AE 8 VAL A 202 ASN A 208 -1 O LEU A 203 N LEU A 191 SHEET 5 AE 8 ARG A 211 VAL A 214 -1 O ARG A 211 N ASN A 208 SHEET 6 AE 8 ILE A 133 VAL A 137 -1 O LEU A 134 N CYS A 212 SHEET 7 AE 8 GLY A 140 ASN A 145 -1 O GLY A 140 N VAL A 137 SHEET 8 AE 8 SER A 177 LYS A 182 -1 O SER A 177 N ASN A 145 SHEET 1 BD 4 THR B 37 ALA B 39 0 SHEET 2 BD 4 ARG B 66 ARG B 73 -1 O ARG B 71 N ALA B 39 SHEET 3 BD 4 ALA B 143 ARG B 152 -1 O LEU B 144 N LEU B 70 SHEET 4 BD 4 ILE B 114 ASP B 120 -1 O ASN B 115 N VAL B 151 SSBOND 1 CYS A 207 CYS A 212 1555 1555 2.12 SSBOND 2 CYS B 36 CYS B 75 1555 1555 2.05 LINK NE2 HIS B 28 CO CO B1175 1555 1555 2.27 LINK NE2 HIS B 28 CO CO B1175 3454 1555 2.12 CISPEP 1 GLY A 48 PRO A 49 0 7.40 CISPEP 2 THR A 53 PRO A 54 0 -8.10 SITE 1 AC1 8 PHE B 85 ASP B 120 VAL B 121 LEU B 137 SITE 2 AC1 8 LEU B 144 ASP B 145 TYR B 146 HOH B2064 SITE 1 AC2 7 TRP A 36 GLU A 38 ASN A 89 GLN A 108 SITE 2 AC2 7 LYS A 110 HOH A2032 ARG B 169 SITE 1 AC3 1 HIS B 28 SITE 1 AC4 12 PRO A 30 TYR A 31 LEU A 32 THR A 53 SITE 2 AC4 12 VAL A 56 ARG A 58 SER A 70 ILE A 93 SITE 3 AC4 12 PRO A 94 PRO A 95 HOH A2137 HOH A2138 SITE 1 AC5 12 LEU A 32 THR A 53 VAL A 56 ARG A 58 SITE 2 AC5 12 ARG A 68 SER A 70 THR A 71 PRO A 73 SITE 3 AC5 12 ILE A 93 PRO A 94 PRO A 95 HOH A2138 CRYST1 103.610 149.830 82.900 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009652 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006674 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012063 0.00000