HEADER HYDROLASE 03-JUN-10 2XGG TITLE STRUCTURE OF TOXOPLASMA GONDII MICRONEMAL PROTEIN 2 A_I TITLE 2 DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: MICRONEME PROTEIN 2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: VWA INTEGRIN-LIKE DOMAIN, RESIDUES 26-174; COMPND 5 EC: 3.1.1.2, 3.4.24.14; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TOXOPLASMA GONDII; SOURCE 3 ORGANISM_TAXID: 5811; SOURCE 4 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS MICRONEME, MIC2, A/I DOMAIN, CELL ADHESION, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.L.TONKIN,O.GRUJIC,M.PEARCE,J.CRAWFORD,M.J.BOULANGER REVDAT 2 29-DEC-10 2XGG 1 JRNL REVDAT 1 18-AUG-10 2XGG 0 JRNL AUTH M.L.TONKIN,O.GRUJIC,M.PEARCE,J.CRAWFORD, JRNL AUTH 2 M.J.BOULANGER JRNL TITL STRUCTURE OF THE MICRONEMAL PROTEIN 2 (MIC2) A/I JRNL TITL 2 DOMAIN FROM TOXOPLASMA GONDII. JRNL REF PROTEIN SCI. V. 19 1985 2010 JRNL REFN ISSN 0961-8368 JRNL PMID 20684023 JRNL DOI 10.1002/PRO.477 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0088 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.84 REMARK 3 DATA CUTOFF (SIGMA(F)) : NONE REMARK 3 COMPLETENESS FOR RANGE (%) : 99.99 REMARK 3 NUMBER OF REFLECTIONS : 19688 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.20991 REMARK 3 R VALUE (WORKING SET) : 0.20644 REMARK 3 FREE R VALUE : 0.27827 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.1 REMARK 3 FREE R VALUE TEST SET COUNT : 1065 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.050 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.103 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1428 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.252 REMARK 3 BIN FREE R VALUE SET COUNT : 78 REMARK 3 BIN FREE R VALUE : 0.361 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2252 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 103 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.097 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01 REMARK 3 B22 (A**2) : 0.01 REMARK 3 B33 (A**2) : -0.01 REMARK 3 B12 (A**2) : 0.00 REMARK 3 B13 (A**2) : 0.00 REMARK 3 B23 (A**2) : 0.00 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.207 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.201 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.143 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.173 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.926 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2297 ; 0.023 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3111 ; 2.045 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 293 ; 7.942 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 96 ;33.254 ;24.792 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 399 ;18.314 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;24.112 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 365 ; 0.154 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1696 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1459 ; 1.338 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2360 ; 2.263 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 838 ; 2.981 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 751 ; 4.459 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. DISORDERED REGIONS WERE MODELED BASED ON REMARK 3 OVERLAYS WITH THE ALTERNATE CHAIN AND STEREOCHEMISTRY. REMARK 4 REMARK 4 2XGG COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-JUN-10. REMARK 100 THE PDBE ID CODE IS EBI-44140. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20754 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.05 REMARK 200 RESOLUTION RANGE LOW (A) : 24.84 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.69 REMARK 200 R MERGE (I) : 0.06 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.90 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.82 REMARK 200 R MERGE FOR SHELL (I) : 0.43 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.70 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIRAS REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.6 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 27% PEG3350, 0.1M HEPES 7.5, REMARK 280 0.2M AMMONIUM SULFATE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 78.81300 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 31.51700 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 31.51700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 118.21950 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 31.51700 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 31.51700 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 39.40650 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 31.51700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 31.51700 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 118.21950 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 31.51700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 31.51700 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 39.40650 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 78.81300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 58 REMARK 465 ASP A 59 REMARK 465 LEU A 60 REMARK 465 GLY A 61 REMARK 465 SER A 62 REMARK 465 LEU A 63 REMARK 465 VAL A 64 REMARK 465 PRO A 65 REMARK 465 ARG A 66 REMARK 465 GLY A 67 REMARK 465 SER A 68 REMARK 465 ALA A 69 REMARK 465 MET A 70 REMARK 465 HIS A 218 REMARK 465 TYR A 219 REMARK 465 VAL A 220 REMARK 465 ALA A 221 REMARK 465 ALA A 222 REMARK 465 ALA A 223 REMARK 465 LEU A 224 REMARK 465 VAL A 225 REMARK 465 PRO A 226 REMARK 465 ARG A 227 REMARK 465 GLY A 228 REMARK 465 SER A 229 REMARK 465 HIS A 230 REMARK 465 HIS A 231 REMARK 465 HIS A 232 REMARK 465 HIS A 233 REMARK 465 HIS A 234 REMARK 465 HIS A 235 REMARK 465 ALA B 58 REMARK 465 ASP B 59 REMARK 465 LEU B 60 REMARK 465 GLY B 61 REMARK 465 SER B 62 REMARK 465 LEU B 63 REMARK 465 VAL B 64 REMARK 465 PRO B 65 REMARK 465 ARG B 66 REMARK 465 GLY B 67 REMARK 465 SER B 68 REMARK 465 ALA B 69 REMARK 465 HIS B 218 REMARK 465 TYR B 219 REMARK 465 VAL B 220 REMARK 465 ALA B 221 REMARK 465 ALA B 222 REMARK 465 ALA B 223 REMARK 465 LEU B 224 REMARK 465 VAL B 225 REMARK 465 PRO B 226 REMARK 465 ARG B 227 REMARK 465 GLY B 228 REMARK 465 SER B 229 REMARK 465 HIS B 230 REMARK 465 HIS B 231 REMARK 465 HIS B 232 REMARK 465 HIS B 233 REMARK 465 HIS B 234 REMARK 465 HIS B 235 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL B 113 CB VAL B 113 CG1 0.135 REMARK 500 VAL B 117 CB VAL B 117 CG2 0.142 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 75 CA - CB - CG ANGL. DEV. = 16.5 DEGREES REMARK 500 ASP B 188 CB - CA - C ANGL. DEV. = -13.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 112 -125.40 -123.00 REMARK 500 SER A 121 -111.68 -131.41 REMARK 500 ASP A 188 37.98 -91.04 REMARK 500 SER A 191 37.58 78.57 REMARK 500 GLU B 112 -114.93 -117.77 REMARK 500 SER B 121 -119.62 -149.46 REMARK 500 ASP B 129 -169.79 -101.01 REMARK 500 THR B 155 76.60 -116.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO A 174 GLY A 175 -39.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 ILE B 87 24.6 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1218 DBREF 2XGG A 72 220 UNP B6KIP6 B6KIP6_TOXGO 26 174 DBREF 2XGG B 72 220 UNP B6KIP6 B6KIP6_TOXGO 26 174 SEQADV 2XGG ALA A 58 UNP B6KIP6 EXPRESSION TAG SEQADV 2XGG ASP A 59 UNP B6KIP6 EXPRESSION TAG SEQADV 2XGG LEU A 60 UNP B6KIP6 EXPRESSION TAG SEQADV 2XGG GLY A 61 UNP B6KIP6 EXPRESSION TAG SEQADV 2XGG SER A 62 UNP B6KIP6 EXPRESSION TAG SEQADV 2XGG LEU A 63 UNP B6KIP6 EXPRESSION TAG SEQADV 2XGG VAL A 64 UNP B6KIP6 EXPRESSION TAG SEQADV 2XGG PRO A 65 UNP B6KIP6 EXPRESSION TAG SEQADV 2XGG ARG A 66 UNP B6KIP6 EXPRESSION TAG SEQADV 2XGG GLY A 67 UNP B6KIP6 EXPRESSION TAG SEQADV 2XGG SER A 68 UNP B6KIP6 EXPRESSION TAG SEQADV 2XGG ALA A 69 UNP B6KIP6 EXPRESSION TAG SEQADV 2XGG MET A 70 UNP B6KIP6 EXPRESSION TAG SEQADV 2XGG GLY A 71 UNP B6KIP6 EXPRESSION TAG SEQADV 2XGG ALA A 221 UNP B6KIP6 EXPRESSION TAG SEQADV 2XGG ALA A 222 UNP B6KIP6 EXPRESSION TAG SEQADV 2XGG ALA A 223 UNP B6KIP6 EXPRESSION TAG SEQADV 2XGG LEU A 224 UNP B6KIP6 EXPRESSION TAG SEQADV 2XGG VAL A 225 UNP B6KIP6 EXPRESSION TAG SEQADV 2XGG PRO A 226 UNP B6KIP6 EXPRESSION TAG SEQADV 2XGG ARG A 227 UNP B6KIP6 EXPRESSION TAG SEQADV 2XGG GLY A 228 UNP B6KIP6 EXPRESSION TAG SEQADV 2XGG SER A 229 UNP B6KIP6 EXPRESSION TAG SEQADV 2XGG HIS A 230 UNP B6KIP6 EXPRESSION TAG SEQADV 2XGG HIS A 231 UNP B6KIP6 EXPRESSION TAG SEQADV 2XGG HIS A 232 UNP B6KIP6 EXPRESSION TAG SEQADV 2XGG HIS A 233 UNP B6KIP6 EXPRESSION TAG SEQADV 2XGG HIS A 234 UNP B6KIP6 EXPRESSION TAG SEQADV 2XGG HIS A 235 UNP B6KIP6 EXPRESSION TAG SEQADV 2XGG ALA B 58 UNP B6KIP6 EXPRESSION TAG SEQADV 2XGG ASP B 59 UNP B6KIP6 EXPRESSION TAG SEQADV 2XGG LEU B 60 UNP B6KIP6 EXPRESSION TAG SEQADV 2XGG GLY B 61 UNP B6KIP6 EXPRESSION TAG SEQADV 2XGG SER B 62 UNP B6KIP6 EXPRESSION TAG SEQADV 2XGG LEU B 63 UNP B6KIP6 EXPRESSION TAG SEQADV 2XGG VAL B 64 UNP B6KIP6 EXPRESSION TAG SEQADV 2XGG PRO B 65 UNP B6KIP6 EXPRESSION TAG SEQADV 2XGG ARG B 66 UNP B6KIP6 EXPRESSION TAG SEQADV 2XGG GLY B 67 UNP B6KIP6 EXPRESSION TAG SEQADV 2XGG SER B 68 UNP B6KIP6 EXPRESSION TAG SEQADV 2XGG ALA B 69 UNP B6KIP6 EXPRESSION TAG SEQADV 2XGG MET B 70 UNP B6KIP6 EXPRESSION TAG SEQADV 2XGG GLY B 71 UNP B6KIP6 EXPRESSION TAG SEQADV 2XGG ALA B 221 UNP B6KIP6 EXPRESSION TAG SEQADV 2XGG ALA B 222 UNP B6KIP6 EXPRESSION TAG SEQADV 2XGG ALA B 223 UNP B6KIP6 EXPRESSION TAG SEQADV 2XGG LEU B 224 UNP B6KIP6 EXPRESSION TAG SEQADV 2XGG VAL B 225 UNP B6KIP6 EXPRESSION TAG SEQADV 2XGG PRO B 226 UNP B6KIP6 EXPRESSION TAG SEQADV 2XGG ARG B 227 UNP B6KIP6 EXPRESSION TAG SEQADV 2XGG GLY B 228 UNP B6KIP6 EXPRESSION TAG SEQADV 2XGG SER B 229 UNP B6KIP6 EXPRESSION TAG SEQADV 2XGG HIS B 230 UNP B6KIP6 EXPRESSION TAG SEQADV 2XGG HIS B 231 UNP B6KIP6 EXPRESSION TAG SEQADV 2XGG HIS B 232 UNP B6KIP6 EXPRESSION TAG SEQADV 2XGG HIS B 233 UNP B6KIP6 EXPRESSION TAG SEQADV 2XGG HIS B 234 UNP B6KIP6 EXPRESSION TAG SEQADV 2XGG HIS B 235 UNP B6KIP6 EXPRESSION TAG SEQRES 1 A 178 ALA ASP LEU GLY SER LEU VAL PRO ARG GLY SER ALA MET SEQRES 2 A 178 GLY THR ASN GLN LEU ASP ILE CYS PHE LEU ILE ASP SER SEQRES 3 A 178 SER GLY SER ILE GLY ILE GLN ASN PHE ARG LEU VAL LYS SEQRES 4 A 178 GLN PHE LEU HIS THR PHE LEU MET VAL LEU PRO ILE GLY SEQRES 5 A 178 PRO GLU GLU VAL ASN ASN ALA VAL VAL THR TYR SER THR SEQRES 6 A 178 ASP VAL HIS LEU GLN TRP ASP LEU GLN SER PRO ASN ALA SEQRES 7 A 178 VAL ASP LYS GLN LEU ALA ALA HIS ALA VAL LEU ASP MET SEQRES 8 A 178 PRO TYR LYS LYS GLY SER THR ASN THR SER ASP GLY LEU SEQRES 9 A 178 LYS ALA CYS LYS GLN ILE LEU PHE THR GLY SER ARG PRO SEQRES 10 A 178 GLY ARG GLU HIS VAL PRO LYS LEU VAL ILE GLY MET THR SEQRES 11 A 178 ASP GLY GLU SER ASP SER ASP PHE ARG THR VAL ARG ALA SEQRES 12 A 178 ALA LYS GLU ILE ARG GLU LEU GLY GLY ILE VAL THR VAL SEQRES 13 A 178 LEU ALA VAL GLY HIS TYR VAL ALA ALA ALA LEU VAL PRO SEQRES 14 A 178 ARG GLY SER HIS HIS HIS HIS HIS HIS SEQRES 1 B 178 ALA ASP LEU GLY SER LEU VAL PRO ARG GLY SER ALA MET SEQRES 2 B 178 GLY THR ASN GLN LEU ASP ILE CYS PHE LEU ILE ASP SER SEQRES 3 B 178 SER GLY SER ILE GLY ILE GLN ASN PHE ARG LEU VAL LYS SEQRES 4 B 178 GLN PHE LEU HIS THR PHE LEU MET VAL LEU PRO ILE GLY SEQRES 5 B 178 PRO GLU GLU VAL ASN ASN ALA VAL VAL THR TYR SER THR SEQRES 6 B 178 ASP VAL HIS LEU GLN TRP ASP LEU GLN SER PRO ASN ALA SEQRES 7 B 178 VAL ASP LYS GLN LEU ALA ALA HIS ALA VAL LEU ASP MET SEQRES 8 B 178 PRO TYR LYS LYS GLY SER THR ASN THR SER ASP GLY LEU SEQRES 9 B 178 LYS ALA CYS LYS GLN ILE LEU PHE THR GLY SER ARG PRO SEQRES 10 B 178 GLY ARG GLU HIS VAL PRO LYS LEU VAL ILE GLY MET THR SEQRES 11 B 178 ASP GLY GLU SER ASP SER ASP PHE ARG THR VAL ARG ALA SEQRES 12 B 178 ALA LYS GLU ILE ARG GLU LEU GLY GLY ILE VAL THR VAL SEQRES 13 B 178 LEU ALA VAL GLY HIS TYR VAL ALA ALA ALA LEU VAL PRO SEQRES 14 B 178 ARG GLY SER HIS HIS HIS HIS HIS HIS HET GOL A1218 6 HETNAM GOL GLYCEROL FORMUL 3 GOL C3 H8 O3 FORMUL 4 HOH *103(H2 O) HELIX 1 1 GLY A 88 LEU A 106 1 19 HELIX 2 2 SER A 132 VAL A 136 5 5 HELIX 3 3 ASP A 137 MET A 148 1 12 HELIX 4 4 ASN A 156 GLY A 171 1 16 HELIX 5 5 ASP A 192 VAL A 198 1 7 HELIX 6 6 VAL A 198 LEU A 207 1 10 HELIX 7 7 GLY B 88 LEU B 106 1 19 HELIX 8 8 SER B 132 VAL B 136 5 5 HELIX 9 9 ASP B 137 LEU B 146 1 10 HELIX 10 10 ASN B 156 GLY B 171 1 16 HELIX 11 11 SER B 193 VAL B 198 1 6 HELIX 12 12 VAL B 198 LEU B 207 1 10 SHEET 1 AA 5 VAL A 124 TRP A 128 0 SHEET 2 AA 5 VAL A 113 TYR A 120 -1 O VAL A 117 N GLN A 127 SHEET 3 AA 5 LEU A 75 ASP A 82 1 O LEU A 75 N ASN A 114 SHEET 4 AA 5 LYS A 181 THR A 187 1 O LEU A 182 N CYS A 78 SHEET 5 AA 5 ILE A 210 ALA A 215 1 O ILE A 210 N VAL A 183 SHEET 1 BA 5 VAL B 124 TRP B 128 0 SHEET 2 BA 5 VAL B 113 TYR B 120 -1 O VAL B 117 N GLN B 127 SHEET 3 BA 5 LEU B 75 ASP B 82 1 O LEU B 75 N ASN B 114 SHEET 4 BA 5 LYS B 181 THR B 187 1 O LEU B 182 N CYS B 78 SHEET 5 BA 5 ILE B 210 ALA B 215 1 O ILE B 210 N VAL B 183 SSBOND 1 CYS A 78 CYS A 164 1555 1555 2.05 SSBOND 2 CYS B 78 CYS B 164 1555 1555 2.11 SITE 1 AC1 3 LEU A 182 PHE B 102 ILE B 184 CRYST1 63.034 63.034 157.626 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015864 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015864 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006344 0.00000