HEADER TRANSFERASE/DNA 07-JUN-10 2XGP TITLE YEAST DNA POLYMERASE ETA IN COMPLEX WITH C8-2-ACETYLAMINOFLUORENE TITLE 2 CONTAINING DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE ETA; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 1-513; COMPND 5 SYNONYM: RADIATION-SENSITIVE PROTEIN 30; COMPND 6 EC: 2.7.7.7; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: 5'-D(*GP*TP*GP*GP*AP*TP*GP*AP*G)-3'; COMPND 10 CHAIN: P, Q; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: 5'-D(*CP*8FG*CP*TP*CP*AP*TP*CP*CP*AP*C)-3'; COMPND 14 CHAIN: T, U; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ROSETTA; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PDEST007; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES KEYWDS TRANSFERASE-DNA COMPLEX, TRANSLESION DNA SYNTHESIS, DNA-BINDING, DNA KEYWDS 2 DAMAGE EXPDTA X-RAY DIFFRACTION AUTHOR S.SCHEIDER,K.LAMMENS,S.SCHORR,K.P.HOPFNER,T.CARELL REVDAT 5 20-DEC-23 2XGP 1 REMARK LINK REVDAT 4 06-DEC-17 2XGP 1 SOURCE REMARK ATOM REVDAT 3 15-DEC-10 2XGP 1 SOURCE JRNL REMARK REVDAT 2 24-NOV-10 2XGP 1 JRNL REVDAT 1 03-NOV-10 2XGP 0 JRNL AUTH S.SCHORR,S.SCHNEIDER,K.LAMMENS,K.P.HOPFNER,T.CARELL JRNL TITL MECHANISM OF REPLICATION BLOCKING AND BYPASS OF Y-FAMILY JRNL TITL 2 POLYMERASE ETA BY BULKY ACETYLAMINOFLUORENE DNA ADDUCTS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 107 20720 2010 JRNL REFN ISSN 0027-8424 JRNL PMID 21076032 JRNL DOI 10.1073/PNAS.1008894107 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0110 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.76 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 40624 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.272 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3592 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2913 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3010 REMARK 3 BIN FREE R VALUE SET COUNT : 262 REMARK 3 BIN FREE R VALUE : 0.3480 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8116 REMARK 3 NUCLEIC ACID ATOMS : 824 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 89 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.834 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.355 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.248 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.857 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.907 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.866 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 9118 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 6051 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 12489 ; 1.442 ; 2.085 REMARK 3 BOND ANGLES OTHERS (DEGREES): 14791 ; 0.914 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1029 ; 5.794 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 350 ;36.868 ;24.714 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1502 ;16.732 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 39 ;19.074 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1394 ; 0.070 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 9492 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1702 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 5090 ; 0.613 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2068 ; 0.082 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 8224 ; 1.217 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 4028 ; 1.654 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 4260 ; 2.833 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. OCCUPANCY OF DISORDERED ATOMS WAS SET TO ZERO REMARK 3 DISORDERED REGIONS WERE MODELED STEREOCHEMICALLY REMARK 4 REMARK 4 2XGP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-JUN-10. REMARK 100 THE DEPOSITION ID IS D_1290044168. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9129 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44372 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 49.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 13.10 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 26.8400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.5 REMARK 200 DATA REDUNDANCY IN SHELL : 13.60 REMARK 200 R MERGE FOR SHELL (I) : 0.52000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.990 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2JIH REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4MG/ML, 11-14% PEG3350, 0.15-0.2M REMARK 280 CACL2 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 146.17500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 51.72000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 51.72000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 73.08750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 51.72000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 51.72000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 219.26250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 51.72000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 51.72000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 73.08750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 51.72000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 51.72000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 219.26250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 146.17500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -61.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, Q, U REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -71.7 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, P, T REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -22 REMARK 465 ALA A -21 REMARK 465 SER A -20 REMARK 465 TRP A -19 REMARK 465 SER A -18 REMARK 465 HIS A -17 REMARK 465 PRO A -16 REMARK 465 GLN A -15 REMARK 465 PHE A -14 REMARK 465 GLU A -13 REMARK 465 LYS A -12 REMARK 465 GLY A -11 REMARK 465 ALA A -10 REMARK 465 SER A -9 REMARK 465 THR A -8 REMARK 465 SER A -7 REMARK 465 LEU A -6 REMARK 465 TYR A -5 REMARK 465 LYS A -4 REMARK 465 LYS A -3 REMARK 465 ALA A -2 REMARK 465 GLY A -1 REMARK 465 LEU A 511 REMARK 465 GLN A 512 REMARK 465 LYS A 513 REMARK 465 MET B -22 REMARK 465 ALA B -21 REMARK 465 SER B -20 REMARK 465 TRP B -19 REMARK 465 SER B -18 REMARK 465 HIS B -17 REMARK 465 PRO B -16 REMARK 465 GLN B -15 REMARK 465 PHE B -14 REMARK 465 GLU B -13 REMARK 465 LYS B -12 REMARK 465 GLY B -11 REMARK 465 ALA B -10 REMARK 465 SER B -9 REMARK 465 THR B -8 REMARK 465 SER B -7 REMARK 465 LEU B -6 REMARK 465 TYR B -5 REMARK 465 LYS B -4 REMARK 465 LYS B -3 REMARK 465 ALA B -2 REMARK 465 LEU B 511 REMARK 465 GLN B 512 REMARK 465 LYS B 513 REMARK 465 DC U 4 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 510 CA C O CB CG OD1 OD2 REMARK 470 ASP B 510 CA C O CB CG OD1 OD2 REMARK 470 DG P 13 O3' REMARK 470 DG Q 13 O3' REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG A 0 CD NE CZ NH1 NH2 REMARK 480 LYS A 82 CG CD CE NZ REMARK 480 LYS A 211 CD CE NZ REMARK 480 LYS A 314 CG CD CE NZ REMARK 480 ARG A 402 CD NE CZ NH1 NH2 REMARK 480 ARG A 456 NE REMARK 480 LYS A 464 CB CG CD CE NZ REMARK 480 ILE A 466 CB CG1 CG2 CD1 REMARK 480 ASN A 467 OD1 ND2 REMARK 480 LYS A 475 CG CD CE NZ REMARK 480 LYS A 487 CE NZ REMARK 480 ARG B 0 CB CG CD REMARK 480 GLU B 122 CD OE1 OE2 REMARK 480 GLU B 174 CD OE1 OE2 REMARK 480 ASP B 180 CG OD1 OD2 REMARK 480 LYS B 182 NZ REMARK 480 LYS B 211 CG CD CE NZ REMARK 480 LYS B 253 CE NZ REMARK 480 LYS B 314 CD CE NZ REMARK 480 LYS B 343 CE NZ REMARK 480 LYS B 349 CG CD CE NZ REMARK 480 VAL B 350 CB CG1 CG2 REMARK 480 LYS B 351 CG CD CE NZ REMARK 480 SER B 353 CB OG REMARK 480 TYR B 355 CG CD1 CD2 CE1 CE2 CZ OH REMARK 480 ASP B 356 CG OD1 OD2 REMARK 480 ARG B 357 CG CD NE CZ NH1 NH2 REMARK 480 LEU B 365 CG CD1 CD2 REMARK 480 LYS B 366 CG CD CE NZ REMARK 480 LYS B 404 CE NZ REMARK 480 LYS B 464 CB CG CD CE NZ REMARK 480 ILE B 466 CB CG1 CG2 CD1 REMARK 480 LYS B 475 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASP B 347 CG1 VAL B 350 1.52 REMARK 500 OD1 ASP B 363 CG LYS B 366 1.69 REMARK 500 OD1 ASP B 363 CD LYS B 366 1.92 REMARK 500 C ASP B 347 CG1 VAL B 350 2.00 REMARK 500 O VAL B 350 CD2 TYR B 355 2.08 REMARK 500 O VAL B 350 CE2 TYR B 355 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 475 CB LYS A 475 CG -0.191 REMARK 500 LYS A 487 CD LYS A 487 CE -0.160 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG P 5 O4' - C1' - N9 ANGL. DEV. = -5.3 DEGREES REMARK 500 DG P 7 O4' - C1' - N9 ANGL. DEV. = -5.3 DEGREES REMARK 500 DG P 8 O4' - C1' - N9 ANGL. DEV. = 2.4 DEGREES REMARK 500 DG P 11 O4' - C1' - N9 ANGL. DEV. = 3.5 DEGREES REMARK 500 DA P 12 O4' - C1' - N9 ANGL. DEV. = 2.7 DEGREES REMARK 500 DG Q 11 O4' - C1' - N9 ANGL. DEV. = 2.6 DEGREES REMARK 500 DC T 4 N1 - C1' - C2' ANGL. DEV. = 9.3 DEGREES REMARK 500 DC T 12 O4' - C1' - N1 ANGL. DEV. = 3.7 DEGREES REMARK 500 DC U 6 O4' - C4' - C3' ANGL. DEV. = -4.9 DEGREES REMARK 500 DT U 7 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DC U 8 O4' - C1' - N1 ANGL. DEV. = 3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 56 -122.71 56.88 REMARK 500 SER A 85 -57.39 69.53 REMARK 500 HIS A 105 74.81 -118.19 REMARK 500 LYS A 117 54.36 -93.45 REMARK 500 ASN A 223 60.76 -159.69 REMARK 500 SER A 265 -175.86 -170.40 REMARK 500 THR A 307 -10.09 90.11 REMARK 500 LYS A 366 50.64 -110.65 REMARK 500 TRP B 56 -119.77 60.92 REMARK 500 MET B 74 -34.89 -35.75 REMARK 500 LYS B 117 56.17 -91.22 REMARK 500 SER B 153 -176.52 -173.10 REMARK 500 SER B 265 -178.09 -170.53 REMARK 500 ASN B 490 42.22 -108.18 REMARK 500 TYR B 493 -89.15 -145.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 MET B 74 -10.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1512 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 30 OD2 REMARK 620 2 ASP A 30 OD1 40.5 REMARK 620 3 ASP A 155 OD1 114.3 75.4 REMARK 620 4 GLU A 156 OE1 67.3 89.7 109.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1514 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 32 OD1 REMARK 620 2 THR A 259 OG1 159.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1513 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 289 OD1 REMARK 620 2 ASP A 289 OD2 44.2 REMARK 620 3 HOH A2026 O 102.4 66.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1511 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 30 OD2 REMARK 620 2 ASP B 30 OD1 43.5 REMARK 620 3 GLU B 156 OE1 76.9 101.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1514 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY B 98 O REMARK 620 2 GLU B 417 OE2 59.3 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1511 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1512 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1513 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1514 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 1511 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 1512 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 1513 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 1514 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1JIH RELATED DB: PDB REMARK 900 YEAST DNA POLYMERASE ETA REMARK 900 RELATED ID: 2WTF RELATED DB: PDB REMARK 900 DNA POLYMERASE ETA IN COMPLEX WITH THE CIS -DIAMMINEPLATINUM (II) 1, REMARK 900 3-GTG INTRASTRAND CROSS-LINK REMARK 900 RELATED ID: 2XGQ RELATED DB: PDB REMARK 900 STRUCTURE OF YEAST DNA POLYMERASE ETA IN COMPLEX WITH C8-N-ACETYL-2- REMARK 900 AMINOANTHRACENE CONTAINING DNA REMARK 999 REMARK 999 SEQUENCE REMARK 999 RESIDUES 1-513 WITH N-TERMINAL STREP-TAG DBREF 2XGP A 1 513 UNP Q04049 POLH_YEAST 1 513 DBREF 2XGP B 1 513 UNP Q04049 POLH_YEAST 1 513 DBREF 2XGP P 5 13 PDB 2XGP 2XGP 5 13 DBREF 2XGP Q 5 13 PDB 2XGP 2XGP 5 13 DBREF 2XGP T 4 14 PDB 2XGP 2XGP 4 14 DBREF 2XGP U 4 14 PDB 2XGP 2XGP 4 14 SEQADV 2XGP MET A -22 UNP Q04049 EXPRESSION TAG SEQADV 2XGP ALA A -21 UNP Q04049 EXPRESSION TAG SEQADV 2XGP SER A -20 UNP Q04049 EXPRESSION TAG SEQADV 2XGP TRP A -19 UNP Q04049 EXPRESSION TAG SEQADV 2XGP SER A -18 UNP Q04049 EXPRESSION TAG SEQADV 2XGP HIS A -17 UNP Q04049 EXPRESSION TAG SEQADV 2XGP PRO A -16 UNP Q04049 EXPRESSION TAG SEQADV 2XGP GLN A -15 UNP Q04049 EXPRESSION TAG SEQADV 2XGP PHE A -14 UNP Q04049 EXPRESSION TAG SEQADV 2XGP GLU A -13 UNP Q04049 EXPRESSION TAG SEQADV 2XGP LYS A -12 UNP Q04049 EXPRESSION TAG SEQADV 2XGP GLY A -11 UNP Q04049 EXPRESSION TAG SEQADV 2XGP ALA A -10 UNP Q04049 EXPRESSION TAG SEQADV 2XGP SER A -9 UNP Q04049 EXPRESSION TAG SEQADV 2XGP THR A -8 UNP Q04049 EXPRESSION TAG SEQADV 2XGP SER A -7 UNP Q04049 EXPRESSION TAG SEQADV 2XGP LEU A -6 UNP Q04049 EXPRESSION TAG SEQADV 2XGP TYR A -5 UNP Q04049 EXPRESSION TAG SEQADV 2XGP LYS A -4 UNP Q04049 EXPRESSION TAG SEQADV 2XGP LYS A -3 UNP Q04049 EXPRESSION TAG SEQADV 2XGP ALA A -2 UNP Q04049 EXPRESSION TAG SEQADV 2XGP GLY A -1 UNP Q04049 EXPRESSION TAG SEQADV 2XGP ARG A 0 UNP Q04049 EXPRESSION TAG SEQADV 2XGP MET B -22 UNP Q04049 EXPRESSION TAG SEQADV 2XGP ALA B -21 UNP Q04049 EXPRESSION TAG SEQADV 2XGP SER B -20 UNP Q04049 EXPRESSION TAG SEQADV 2XGP TRP B -19 UNP Q04049 EXPRESSION TAG SEQADV 2XGP SER B -18 UNP Q04049 EXPRESSION TAG SEQADV 2XGP HIS B -17 UNP Q04049 EXPRESSION TAG SEQADV 2XGP PRO B -16 UNP Q04049 EXPRESSION TAG SEQADV 2XGP GLN B -15 UNP Q04049 EXPRESSION TAG SEQADV 2XGP PHE B -14 UNP Q04049 EXPRESSION TAG SEQADV 2XGP GLU B -13 UNP Q04049 EXPRESSION TAG SEQADV 2XGP LYS B -12 UNP Q04049 EXPRESSION TAG SEQADV 2XGP GLY B -11 UNP Q04049 EXPRESSION TAG SEQADV 2XGP ALA B -10 UNP Q04049 EXPRESSION TAG SEQADV 2XGP SER B -9 UNP Q04049 EXPRESSION TAG SEQADV 2XGP THR B -8 UNP Q04049 EXPRESSION TAG SEQADV 2XGP SER B -7 UNP Q04049 EXPRESSION TAG SEQADV 2XGP LEU B -6 UNP Q04049 EXPRESSION TAG SEQADV 2XGP TYR B -5 UNP Q04049 EXPRESSION TAG SEQADV 2XGP LYS B -4 UNP Q04049 EXPRESSION TAG SEQADV 2XGP LYS B -3 UNP Q04049 EXPRESSION TAG SEQADV 2XGP ALA B -2 UNP Q04049 EXPRESSION TAG SEQADV 2XGP GLY B -1 UNP Q04049 EXPRESSION TAG SEQADV 2XGP ARG B 0 UNP Q04049 EXPRESSION TAG SEQRES 1 A 536 MET ALA SER TRP SER HIS PRO GLN PHE GLU LYS GLY ALA SEQRES 2 A 536 SER THR SER LEU TYR LYS LYS ALA GLY ARG MET SER LYS SEQRES 3 A 536 PHE THR TRP LYS GLU LEU ILE GLN LEU GLY SER PRO SER SEQRES 4 A 536 LYS ALA TYR GLU SER SER LEU ALA CYS ILE ALA HIS ILE SEQRES 5 A 536 ASP MET ASN ALA PHE PHE ALA GLN VAL GLU GLN MET ARG SEQRES 6 A 536 CYS GLY LEU SER LYS GLU ASP PRO VAL VAL CYS VAL GLN SEQRES 7 A 536 TRP ASN SER ILE ILE ALA VAL SER TYR ALA ALA ARG LYS SEQRES 8 A 536 TYR GLY ILE SER ARG MET ASP THR ILE GLN GLU ALA LEU SEQRES 9 A 536 LYS LYS CYS SER ASN LEU ILE PRO ILE HIS THR ALA VAL SEQRES 10 A 536 PHE LYS LYS GLY GLU ASP PHE TRP GLN TYR HIS ASP GLY SEQRES 11 A 536 CYS GLY SER TRP VAL GLN ASP PRO ALA LYS GLN ILE SER SEQRES 12 A 536 VAL GLU ASP HIS LYS VAL SER LEU GLU PRO TYR ARG ARG SEQRES 13 A 536 GLU SER ARG LYS ALA LEU LYS ILE PHE LYS SER ALA CYS SEQRES 14 A 536 ASP LEU VAL GLU ARG ALA SER ILE ASP GLU VAL PHE LEU SEQRES 15 A 536 ASP LEU GLY ARG ILE CYS PHE ASN MET LEU MET PHE ASP SEQRES 16 A 536 ASN GLU TYR GLU LEU THR GLY ASP LEU LYS LEU LYS ASP SEQRES 17 A 536 ALA LEU SER ASN ILE ARG GLU ALA PHE ILE GLY GLY ASN SEQRES 18 A 536 TYR ASP ILE ASN SER HIS LEU PRO LEU ILE PRO GLU LYS SEQRES 19 A 536 ILE LYS SER LEU LYS PHE GLU GLY ASP VAL PHE ASN PRO SEQRES 20 A 536 GLU GLY ARG ASP LEU ILE THR ASP TRP ASP ASP VAL ILE SEQRES 21 A 536 LEU ALA LEU GLY SER GLN VAL CYS LYS GLY ILE ARG ASP SEQRES 22 A 536 SER ILE LYS ASP ILE LEU GLY TYR THR THR SER CYS GLY SEQRES 23 A 536 LEU SER SER THR LYS ASN VAL CYS LYS LEU ALA SER ASN SEQRES 24 A 536 TYR LYS LYS PRO ASP ALA GLN THR ILE VAL LYS ASN ASP SEQRES 25 A 536 CYS LEU LEU ASP PHE LEU ASP CYS GLY LYS PHE GLU ILE SEQRES 26 A 536 THR SER PHE TRP THR LEU GLY GLY VAL LEU GLY LYS GLU SEQRES 27 A 536 LEU ILE ASP VAL LEU ASP LEU PRO HIS GLU ASN SER ILE SEQRES 28 A 536 LYS HIS ILE ARG GLU THR TRP PRO ASP ASN ALA GLY GLN SEQRES 29 A 536 LEU LYS GLU PHE LEU ASP ALA LYS VAL LYS GLN SER ASP SEQRES 30 A 536 TYR ASP ARG SER THR SER ASN ILE ASP PRO LEU LYS THR SEQRES 31 A 536 ALA ASP LEU ALA GLU LYS LEU PHE LYS LEU SER ARG GLY SEQRES 32 A 536 ARG TYR GLY LEU PRO LEU SER SER ARG PRO VAL VAL LYS SEQRES 33 A 536 SER MET MET SER ASN LYS ASN LEU ARG GLY LYS SER CYS SEQRES 34 A 536 ASN SER ILE VAL ASP CYS ILE SER TRP LEU GLU VAL PHE SEQRES 35 A 536 CYS ALA GLU LEU THR SER ARG ILE GLN ASP LEU GLU GLN SEQRES 36 A 536 GLU TYR ASN LYS ILE VAL ILE PRO ARG THR VAL SER ILE SEQRES 37 A 536 SER LEU LYS THR LYS SER TYR GLU VAL TYR ARG LYS SER SEQRES 38 A 536 GLY PRO VAL ALA TYR LYS GLY ILE ASN PHE GLN SER HIS SEQRES 39 A 536 GLU LEU LEU LYS VAL GLY ILE LYS PHE VAL THR ASP LEU SEQRES 40 A 536 ASP ILE LYS GLY LYS ASN LYS SER TYR TYR PRO LEU THR SEQRES 41 A 536 LYS LEU SER MET THR ILE THR ASN PHE ASP ILE ILE ASP SEQRES 42 A 536 LEU GLN LYS SEQRES 1 B 536 MET ALA SER TRP SER HIS PRO GLN PHE GLU LYS GLY ALA SEQRES 2 B 536 SER THR SER LEU TYR LYS LYS ALA GLY ARG MET SER LYS SEQRES 3 B 536 PHE THR TRP LYS GLU LEU ILE GLN LEU GLY SER PRO SER SEQRES 4 B 536 LYS ALA TYR GLU SER SER LEU ALA CYS ILE ALA HIS ILE SEQRES 5 B 536 ASP MET ASN ALA PHE PHE ALA GLN VAL GLU GLN MET ARG SEQRES 6 B 536 CYS GLY LEU SER LYS GLU ASP PRO VAL VAL CYS VAL GLN SEQRES 7 B 536 TRP ASN SER ILE ILE ALA VAL SER TYR ALA ALA ARG LYS SEQRES 8 B 536 TYR GLY ILE SER ARG MET ASP THR ILE GLN GLU ALA LEU SEQRES 9 B 536 LYS LYS CYS SER ASN LEU ILE PRO ILE HIS THR ALA VAL SEQRES 10 B 536 PHE LYS LYS GLY GLU ASP PHE TRP GLN TYR HIS ASP GLY SEQRES 11 B 536 CYS GLY SER TRP VAL GLN ASP PRO ALA LYS GLN ILE SER SEQRES 12 B 536 VAL GLU ASP HIS LYS VAL SER LEU GLU PRO TYR ARG ARG SEQRES 13 B 536 GLU SER ARG LYS ALA LEU LYS ILE PHE LYS SER ALA CYS SEQRES 14 B 536 ASP LEU VAL GLU ARG ALA SER ILE ASP GLU VAL PHE LEU SEQRES 15 B 536 ASP LEU GLY ARG ILE CYS PHE ASN MET LEU MET PHE ASP SEQRES 16 B 536 ASN GLU TYR GLU LEU THR GLY ASP LEU LYS LEU LYS ASP SEQRES 17 B 536 ALA LEU SER ASN ILE ARG GLU ALA PHE ILE GLY GLY ASN SEQRES 18 B 536 TYR ASP ILE ASN SER HIS LEU PRO LEU ILE PRO GLU LYS SEQRES 19 B 536 ILE LYS SER LEU LYS PHE GLU GLY ASP VAL PHE ASN PRO SEQRES 20 B 536 GLU GLY ARG ASP LEU ILE THR ASP TRP ASP ASP VAL ILE SEQRES 21 B 536 LEU ALA LEU GLY SER GLN VAL CYS LYS GLY ILE ARG ASP SEQRES 22 B 536 SER ILE LYS ASP ILE LEU GLY TYR THR THR SER CYS GLY SEQRES 23 B 536 LEU SER SER THR LYS ASN VAL CYS LYS LEU ALA SER ASN SEQRES 24 B 536 TYR LYS LYS PRO ASP ALA GLN THR ILE VAL LYS ASN ASP SEQRES 25 B 536 CYS LEU LEU ASP PHE LEU ASP CYS GLY LYS PHE GLU ILE SEQRES 26 B 536 THR SER PHE TRP THR LEU GLY GLY VAL LEU GLY LYS GLU SEQRES 27 B 536 LEU ILE ASP VAL LEU ASP LEU PRO HIS GLU ASN SER ILE SEQRES 28 B 536 LYS HIS ILE ARG GLU THR TRP PRO ASP ASN ALA GLY GLN SEQRES 29 B 536 LEU LYS GLU PHE LEU ASP ALA LYS VAL LYS GLN SER ASP SEQRES 30 B 536 TYR ASP ARG SER THR SER ASN ILE ASP PRO LEU LYS THR SEQRES 31 B 536 ALA ASP LEU ALA GLU LYS LEU PHE LYS LEU SER ARG GLY SEQRES 32 B 536 ARG TYR GLY LEU PRO LEU SER SER ARG PRO VAL VAL LYS SEQRES 33 B 536 SER MET MET SER ASN LYS ASN LEU ARG GLY LYS SER CYS SEQRES 34 B 536 ASN SER ILE VAL ASP CYS ILE SER TRP LEU GLU VAL PHE SEQRES 35 B 536 CYS ALA GLU LEU THR SER ARG ILE GLN ASP LEU GLU GLN SEQRES 36 B 536 GLU TYR ASN LYS ILE VAL ILE PRO ARG THR VAL SER ILE SEQRES 37 B 536 SER LEU LYS THR LYS SER TYR GLU VAL TYR ARG LYS SER SEQRES 38 B 536 GLY PRO VAL ALA TYR LYS GLY ILE ASN PHE GLN SER HIS SEQRES 39 B 536 GLU LEU LEU LYS VAL GLY ILE LYS PHE VAL THR ASP LEU SEQRES 40 B 536 ASP ILE LYS GLY LYS ASN LYS SER TYR TYR PRO LEU THR SEQRES 41 B 536 LYS LEU SER MET THR ILE THR ASN PHE ASP ILE ILE ASP SEQRES 42 B 536 LEU GLN LYS SEQRES 1 P 9 DG DT DG DG DA DT DG DA DG SEQRES 1 Q 9 DG DT DG DG DA DT DG DA DG SEQRES 1 T 11 DC 8FG DC DT DC DA DT DC DC DA DC SEQRES 1 U 11 DC 8FG DC DT DC DA DT DC DC DA DC MODRES 2XGP 8FG T 5 DG MODRES 2XGP 8FG U 5 DG HET 8FG T 5 39 HET 8FG U 5 39 HET CA A1511 1 HET CA A1512 1 HET CA A1513 1 HET CA A1514 1 HET CA B1511 1 HET CA B1512 1 HET CA B1513 1 HET CA B1514 1 HETNAM 8FG N-(5'-PHOSPHO-2'-DEOXYGUANOSIN-8-YL)-2- HETNAM 2 8FG ACETYLAMINOFLUORENE HETNAM CA CALCIUM ION FORMUL 5 8FG 2(C25 H25 N6 O8 P) FORMUL 7 CA 8(CA 2+) FORMUL 15 HOH *89(H2 O) HELIX 1 1 TRP A 6 GLN A 11 1 6 HELIX 2 2 LEU A 12 SER A 14 5 3 HELIX 3 3 ALA A 33 CYS A 43 1 11 HELIX 4 4 SER A 63 LYS A 68 1 6 HELIX 5 5 THR A 76 SER A 85 1 10 HELIX 6 6 LEU A 128 CYS A 146 1 19 HELIX 7 7 LEU A 161 ASP A 172 1 12 HELIX 8 8 LEU A 183 GLY A 197 1 15 HELIX 9 9 PRO A 209 LEU A 215 5 7 HELIX 10 10 ASP A 232 LEU A 256 1 25 HELIX 11 11 THR A 267 LYS A 278 1 12 HELIX 12 12 LYS A 287 ASP A 289 5 3 HELIX 13 13 CYS A 290 ASP A 296 1 7 HELIX 14 14 GLU A 301 PHE A 305 5 5 HELIX 15 15 GLY A 310 LEU A 320 1 11 HELIX 16 16 ASN A 326 TRP A 335 1 10 HELIX 17 17 ASN A 338 LYS A 351 1 14 HELIX 18 18 ASP A 363 LEU A 365 5 3 HELIX 19 19 LYS A 366 SER A 378 1 13 HELIX 20 20 SER A 408 ASN A 435 1 28 HELIX 21 21 GLN A 469 GLY A 488 1 20 HELIX 22 22 THR B 5 GLN B 11 1 7 HELIX 23 23 LEU B 12 SER B 14 5 3 HELIX 24 24 LYS B 17 SER B 21 5 5 HELIX 25 25 ALA B 33 CYS B 43 1 11 HELIX 26 26 SER B 63 LYS B 68 1 6 HELIX 27 27 THR B 76 LYS B 82 1 7 HELIX 28 28 SER B 120 GLU B 122 5 3 HELIX 29 29 LEU B 128 CYS B 146 1 19 HELIX 30 30 LEU B 161 ASP B 172 1 12 HELIX 31 31 LYS B 182 LEU B 187 1 6 HELIX 32 32 LEU B 187 GLY B 197 1 11 HELIX 33 33 PRO B 209 LYS B 213 5 5 HELIX 34 34 ASP B 232 LEU B 256 1 25 HELIX 35 35 THR B 267 LYS B 278 1 12 HELIX 36 36 LYS B 287 ASP B 289 5 3 HELIX 37 37 CYS B 290 ASP B 296 1 7 HELIX 38 38 GLU B 301 PHE B 305 5 5 HELIX 39 39 GLY B 310 LEU B 320 1 11 HELIX 40 40 ASN B 326 TRP B 335 1 10 HELIX 41 41 ASN B 338 LYS B 351 1 14 HELIX 42 42 LYS B 366 SER B 378 1 13 HELIX 43 43 SER B 408 ASN B 435 1 28 HELIX 44 44 GLN B 469 GLY B 488 1 20 SHEET 1 AA 2 MET A 1 THR A 5 0 SHEET 2 AA 2 HIS A 204 PRO A 206 -1 O LEU A 205 N SER A 2 SHEET 1 AB 6 VAL A 149 SER A 153 0 SHEET 2 AB 6 GLU A 156 ASP A 160 -1 O GLU A 156 N SER A 153 SHEET 3 AB 6 ILE A 26 ASP A 30 -1 O ALA A 27 N LEU A 159 SHEET 4 AB 6 SER A 261 SER A 265 -1 O SER A 261 N ASP A 30 SHEET 5 AB 6 ALA A 282 ILE A 285 1 O ALA A 282 N CYS A 262 SHEET 6 AB 6 ASP A 220 VAL A 221 1 O ASP A 220 N ILE A 285 SHEET 1 AC 3 SER A 58 VAL A 62 0 SHEET 2 AC 3 VAL A 51 GLN A 55 -1 O CYS A 53 N ILE A 60 SHEET 3 AC 3 ILE A 88 HIS A 91 1 O ILE A 88 N VAL A 52 SHEET 1 AD 2 VAL A 94 LYS A 96 0 SHEET 2 AD 2 HIS A 124 VAL A 126 -1 O LYS A 125 N PHE A 95 SHEET 1 AE 2 GLU A 176 THR A 178 0 SHEET 2 AE 2 LEU A 181 LYS A 182 -1 O LEU A 181 N THR A 178 SHEET 1 AF 4 MET A 395 ASN A 400 0 SHEET 2 AF 4 LYS A 498 ILE A 509 -1 O LEU A 499 N LYS A 399 SHEET 3 AF 4 ILE A 437 LYS A 448 -1 O ILE A 437 N ILE A 509 SHEET 4 AF 4 VAL A 454 PRO A 460 -1 O TYR A 455 N LEU A 447 SHEET 1 BA 6 VAL B 149 SER B 153 0 SHEET 2 BA 6 GLU B 156 ASP B 160 -1 O GLU B 156 N SER B 153 SHEET 3 BA 6 ILE B 26 ASP B 30 -1 O ALA B 27 N LEU B 159 SHEET 4 BA 6 SER B 261 SER B 265 -1 O SER B 261 N ASP B 30 SHEET 5 BA 6 ALA B 282 ILE B 285 1 O ALA B 282 N CYS B 262 SHEET 6 BA 6 ASP B 220 VAL B 221 1 O ASP B 220 N ILE B 285 SHEET 1 BB 3 SER B 58 VAL B 62 0 SHEET 2 BB 3 VAL B 51 GLN B 55 -1 O CYS B 53 N ILE B 60 SHEET 3 BB 3 ILE B 88 HIS B 91 1 O ILE B 88 N VAL B 52 SHEET 1 BC 3 TRP B 102 GLN B 103 0 SHEET 2 BC 3 VAL B 94 LYS B 96 -1 O VAL B 94 N GLN B 103 SHEET 3 BC 3 HIS B 124 VAL B 126 -1 O LYS B 125 N PHE B 95 SHEET 1 BD 4 MET B 395 ASN B 400 0 SHEET 2 BD 4 LYS B 498 ASP B 507 -1 O LEU B 499 N LYS B 399 SHEET 3 BD 4 ILE B 439 LYS B 448 -1 O ILE B 439 N ASP B 507 SHEET 4 BD 4 VAL B 454 PRO B 460 -1 O TYR B 455 N LEU B 447 LINK O3' DC T 4 P 8FG T 5 1555 1555 1.59 LINK O3' 8FG T 5 P DC T 6 1555 1555 1.58 LINK O3' 8FG U 5 P DC U 6 1555 1555 1.61 LINK OD2 ASP A 30 CA CA A1512 1555 1555 3.15 LINK OD1 ASP A 30 CA CA A1512 1555 1555 3.12 LINK OD1 ASN A 32 CA CA A1514 1555 1555 2.96 LINK OD2 ASP A 155 CA CA A1511 1555 1555 3.19 LINK OD1 ASP A 155 CA CA A1512 1555 1555 3.17 LINK OE1 GLU A 156 CA CA A1512 1555 1555 2.65 LINK OG1 THR A 259 CA CA A1514 1555 1555 2.98 LINK OD1 ASP A 289 CA CA A1513 1555 1555 2.47 LINK OD2 ASP A 289 CA CA A1513 1555 1555 3.12 LINK CA CA A1513 O HOH A2026 1555 1555 2.87 LINK OD2 ASP B 30 CA CA B1511 1555 1555 2.72 LINK OD1 ASP B 30 CA CA B1511 1555 1555 3.12 LINK O GLY B 98 CA CA B1514 1555 1555 2.69 LINK OD2 ASP B 155 CA CA B1512 1555 1555 2.91 LINK OE1 GLU B 156 CA CA B1511 1555 1555 2.83 LINK OD1 ASP B 289 CA CA B1513 1555 1555 2.79 LINK OE2 GLU B 417 CA CA B1514 1555 1555 2.77 CISPEP 1 LYS A 279 PRO A 280 0 3.03 CISPEP 2 TYR A 494 PRO A 495 0 2.10 CISPEP 3 LYS B 279 PRO B 280 0 5.94 CISPEP 4 TYR B 494 PRO B 495 0 -2.99 SITE 1 AC1 2 ASP A 155 CA A1512 SITE 1 AC2 4 ASP A 30 ASP A 155 GLU A 156 CA A1511 SITE 1 AC3 3 THR A 231 ASP A 289 HOH A2026 SITE 1 AC4 6 ASN A 32 THR A 259 THR A 260 SER A 261 SITE 2 AC4 6 PRO A 280 ASP A 281 SITE 1 AC5 4 ASP B 30 ASP B 155 GLU B 156 CA B1512 SITE 1 AC6 3 ASP B 155 GLU B 156 CA B1511 SITE 1 AC7 3 LYS B 3 THR B 231 ASP B 289 SITE 1 AC8 2 GLY B 98 GLU B 417 CRYST1 103.440 103.440 292.350 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009667 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009667 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003421 0.00000