HEADER LIGASE 07-JUN-10 2XGT TITLE ASPARAGINYL-TRNA SYNTHETASE FROM BRUGIA MALAYI COMPLEXED TITLE 2 WITH THE SULPHAMOYL ANALOGUE OF ASPARAGINYL-ADENYLATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ASPARAGINYL-TRNA SYNTHETASE, CYTOPLASMIC; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CATALYTICALLY ACTIVE FRAGMENT LACKING N- TERMINAL COMPND 5 EXTENSION, RESIDUES 114-548; COMPND 6 EC: 6.1.1.4; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BRUGIA MALAYI; SOURCE 3 ORGANISM_TAXID: 6279; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET28A KEYWDS LIGASE, ATP-BINDING, PROTEIN BIOSYNTHESIS EXPDTA X-RAY DIFFRACTION AUTHOR T.CREPIN,M.HAERTLEIN,M.KRON,S.CUSACK REVDAT 2 09-MAR-11 2XGT 1 JRNL REVDAT 1 15-DEC-10 2XGT 0 JRNL AUTH T.CREPIN,F.PETERSON,M.HAERTLEIN,D.JENSEN,C.WANG, JRNL AUTH 2 S.CUSACK,M.KRON JRNL TITL A HYBRID STRUCTURAL MODEL OF THE COMPLETE BRUGIA JRNL TITL 2 MALAYI CYTOPLASMIC ASPARAGINYL-TRNA SYNTHETASE. JRNL REF J.MOL.BIOL. V. 405 1056 2011 JRNL REFN ISSN 0022-2836 JRNL PMID 21134380 JRNL DOI 10.1016/J.JMB.2010.11.049 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.C.K.SUKURU,T.CREPIN,Y.MILEV,L.C.MARSH,J.B.HILL, REMARK 1 AUTH 2 R.J.ANDERSON,J.C.MORRIS,A.ROHATGI,G.O'MAHONY,M.GROTLI, REMARK 1 AUTH 3 F.DANEL,M.G.P.PAGE,M.HARTLEIN,S.CUSACK,M.A.KRON,L.A.KUHN REMARK 1 TITL DISCOVERING NEW CLASSES OF BRUGIA MALAYI ASPARAGINYL-TRNA REMARK 1 TITL 2 SYNTHETASE INHIBITORS AND RELATING SPECIFICITY TO REMARK 1 TITL 3 CONFORMATIONAL CHANGE. REMARK 1 REF J. COMPUT. AIDED MOL. DES. V. 20 159 2006 REMARK 1 REFN ISSN 0920-654X REMARK 1 PMID 16645791 REMARK 1 DOI 10.1007/S10822-006-9043-5 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 94.92 REMARK 3 DATA CUTOFF (SIGMA(F)) : NONE REMARK 3 COMPLETENESS FOR RANGE (%) : 88.88 REMARK 3 NUMBER OF REFLECTIONS : 69345 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.20378 REMARK 3 R VALUE (WORKING SET) : 0.20231 REMARK 3 FREE R VALUE : 0.25017 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.0 REMARK 3 FREE R VALUE TEST SET COUNT : 2136 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.900 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.949 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3334 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 58.76 REMARK 3 BIN R VALUE (WORKING SET) : 0.355 REMARK 3 BIN FREE R VALUE SET COUNT : 117 REMARK 3 BIN FREE R VALUE : 0.415 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6960 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 70 REMARK 3 SOLVENT ATOMS : 496 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.042 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.73 REMARK 3 B22 (A**2) : 1.44 REMARK 3 B33 (A**2) : -0.71 REMARK 3 B12 (A**2) : 0.00 REMARK 3 B13 (A**2) : 0.00 REMARK 3 B23 (A**2) : 0.00 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.177 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.165 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.111 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.799 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.934 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.904 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7187 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 4947 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9734 ; 1.325 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11981 ; 0.898 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 855 ; 6.260 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 360 ;36.669 ;23.722 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1238 ;14.695 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 58 ;15.827 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1058 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7955 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1517 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4292 ; 0.692 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1735 ; 0.154 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6934 ; 1.261 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2895 ; 1.825 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2800 ; 2.914 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. U VALUES REFINED INDIVIDUALLY. REMARK 4 REMARK 4 2XGT COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-JUN-10. REMARK 100 THE PDBE ID CODE IS EBI-44174. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-APR-00 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.934 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 71529 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.90 REMARK 200 RESOLUTION RANGE LOW (A) : 30.00 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.5 REMARK 200 DATA REDUNDANCY : 3.9 REMARK 200 R MERGE (I) : 0.09 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.90 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 69.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.3 REMARK 200 R MERGE FOR SHELL (I) : 0.44 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.90 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: T. THERMOPHILUS ASPARAGINYL-TRNA SYNTHETASE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM HEPES PH8.5, 200MM REMARK 280 NA-ACETATE, 14-16% PEG 4000 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.75500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.13400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 62.85000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 72.13400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.75500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 62.85000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -46.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 188 REMARK 465 GLU A 189 REMARK 465 GLY A 190 REMARK 465 LYS A 191 REMARK 465 GLU A 192 REMARK 465 ALA A 193 REMARK 465 GLU A 221 REMARK 465 GLU A 222 REMARK 465 GLY B 190 REMARK 465 LYS B 191 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 424 O HOH A 2218 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 329 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 122 11.05 -147.04 REMARK 500 ASP A 161 -117.28 56.85 REMARK 500 SER A 298 140.77 -172.89 REMARK 500 VAL A 469 -43.76 -135.59 REMARK 500 TYR A 508 69.53 -106.50 REMARK 500 ASP B 161 -120.68 61.66 REMARK 500 ASP B 216 -4.29 -57.04 REMARK 500 SER B 298 141.69 -174.96 REMARK 500 TYR B 508 68.67 -104.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO B 188 GLU B 189 -141.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 GLYCEROL (GOL): FROM CRYOPROTECTANT REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1551 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A2243 O REMARK 620 2 HOH A2244 O 78.6 REMARK 620 3 GLU A 471 OE2 102.2 90.4 REMARK 620 4 HOH A2287 O 83.7 98.3 170.4 REMARK 620 5 NSS A1550 OAY 89.5 165.9 84.7 87.8 REMARK 620 6 HOH A2247 O 173.2 99.2 84.1 90.3 93.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1551 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 NSS B1550 OAX REMARK 620 2 HOH B2173 O 89.7 REMARK 620 3 HOH B2175 O 172.3 89.1 REMARK 620 4 HOH B2208 O 90.7 93.8 97.0 REMARK 620 5 GLU B 471 OE2 87.1 107.0 85.9 159.0 REMARK 620 N 1 2 3 4 REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEETS PRESENTED AS "AA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 5-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 6-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 700 REMARK 700 THE SHEETS PRESENTED AS "BA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 5-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 6-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1549 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NSS A1550 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NSS B1550 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A1551 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B1551 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2XTI RELATED DB: PDB REMARK 900 ASPARAGINYL-TRNA SYNTHETASE FROM BRUGIA MALAYI REMARK 900 COMPLEXED WITH ATP:MG AND L-ASP-BETA- REMARK 900 NOH ADENYLATE:PPI:MG DBREF 2XGT A 114 548 UNP A8PWE4 A8PWE4_BRUMA 114 548 DBREF 2XGT B 114 548 UNP A8PWE4 A8PWE4_BRUMA 114 548 SEQADV 2XGT VAL A 265 UNP A8PWE4 LEU 265 CONFLICT SEQADV 2XGT GLN A 454 UNP A8PWE4 LYS 454 CONFLICT SEQADV 2XGT VAL B 265 UNP A8PWE4 LEU 265 CONFLICT SEQADV 2XGT GLN B 454 UNP A8PWE4 LYS 454 CONFLICT SEQRES 1 A 435 VAL LYS ILE ARG ASP LEU VAL LYS HIS ARG ASN GLU ARG SEQRES 2 A 435 VAL CYS ILE LYS GLY TRP ILE HIS ARG MET ARG ARG GLN SEQRES 3 A 435 GLY LYS SER LEU MET PHE PHE ILE LEU ARG ASP GLY THR SEQRES 4 A 435 GLY PHE LEU GLN VAL LEU LEU MET ASP LYS LEU CYS GLN SEQRES 5 A 435 THR TYR ASP ALA LEU THR VAL ASN THR GLU CYS THR VAL SEQRES 6 A 435 GLU ILE TYR GLY ALA ILE LYS GLU VAL PRO GLU GLY LYS SEQRES 7 A 435 GLU ALA PRO ASN GLY HIS GLU LEU ILE ALA ASP PHE TRP SEQRES 8 A 435 LYS ILE ILE GLY ASN ALA PRO PRO GLY GLY ILE ASP ASN SEQRES 9 A 435 VAL LEU ASN GLU GLU ALA SER VAL ASP LYS MET LEU ASP SEQRES 10 A 435 ASN ARG HIS LEU VAL ILE ARG GLY GLU ASN ALA ALA ALA SEQRES 11 A 435 LEU LEU ARG LEU ARG ALA ALA ALA THR ARG ALA MET ARG SEQRES 12 A 435 GLU HIS PHE TYR ASN ALA GLY TYR VAL GLU VAL ALA PRO SEQRES 13 A 435 PRO THR LEU VAL GLN THR GLN VAL GLU GLY GLY SER THR SEQRES 14 A 435 LEU PHE ASN LEU ASP TYR PHE GLY GLU GLN SER PHE LEU SEQRES 15 A 435 THR GLN SER SER GLN LEU TYR LEU GLU THR CYS ILE PRO SEQRES 16 A 435 THR LEU GLY ASP VAL PHE CYS ILE ALA GLN SER TYR ARG SEQRES 17 A 435 ALA GLU LYS SER ARG THR ARG ARG HIS LEU ALA GLU TYR SEQRES 18 A 435 ALA HIS VAL GLU ALA GLU CYS PRO PHE ILE THR LEU ASP SEQRES 19 A 435 ASP LEU MET GLU LYS ILE GLU GLU LEU VAL CYS ASP THR SEQRES 20 A 435 VAL ASP ARG LEU LEU ALA ASP GLU GLU ALA LYS LYS LEU SEQRES 21 A 435 LEU GLU HIS ILE ASN PRO LYS PHE GLN PRO PRO GLU ARG SEQRES 22 A 435 PRO PHE LEU ARG MET GLU TYR LYS ASP ALA ILE LYS TRP SEQRES 23 A 435 LEU GLN GLU HIS ASN VAL GLU ASN GLU PHE GLY ASN THR SEQRES 24 A 435 PHE THR TYR GLY GLU ASP ILE ALA GLU ALA ALA GLU ARG SEQRES 25 A 435 PHE MET THR ASP THR ILE ASN LYS PRO ILE LEU LEU ASN SEQRES 26 A 435 ARG PHE PRO SER GLU ILE LYS ALA PHE TYR MET GLN ARG SEQRES 27 A 435 ASP ALA GLN ASP ASN THR LEU THR GLU SER VAL ASP LEU SEQRES 28 A 435 LEU MET PRO GLY VAL GLY GLU ILE VAL GLY GLY SER MET SEQRES 29 A 435 ARG ILE TRP LYS PHE ASP GLU LEU SER LYS ALA PHE LYS SEQRES 30 A 435 ASN VAL GLU ILE ASP PRO LYS PRO TYR TYR TRP TYR LEU SEQRES 31 A 435 ASP GLN ARG LEU TYR GLY THR CYS PRO HIS GLY GLY TYR SEQRES 32 A 435 GLY LEU GLY LEU GLU ARG PHE ILE CYS TRP LEU THR ASN SEQRES 33 A 435 THR ASN HIS ILE ARG ASP VAL CYS LEU TYR PRO ARG PHE SEQRES 34 A 435 VAL GLY ARG CYS VAL PRO SEQRES 1 B 435 VAL LYS ILE ARG ASP LEU VAL LYS HIS ARG ASN GLU ARG SEQRES 2 B 435 VAL CYS ILE LYS GLY TRP ILE HIS ARG MET ARG ARG GLN SEQRES 3 B 435 GLY LYS SER LEU MET PHE PHE ILE LEU ARG ASP GLY THR SEQRES 4 B 435 GLY PHE LEU GLN VAL LEU LEU MET ASP LYS LEU CYS GLN SEQRES 5 B 435 THR TYR ASP ALA LEU THR VAL ASN THR GLU CYS THR VAL SEQRES 6 B 435 GLU ILE TYR GLY ALA ILE LYS GLU VAL PRO GLU GLY LYS SEQRES 7 B 435 GLU ALA PRO ASN GLY HIS GLU LEU ILE ALA ASP PHE TRP SEQRES 8 B 435 LYS ILE ILE GLY ASN ALA PRO PRO GLY GLY ILE ASP ASN SEQRES 9 B 435 VAL LEU ASN GLU GLU ALA SER VAL ASP LYS MET LEU ASP SEQRES 10 B 435 ASN ARG HIS LEU VAL ILE ARG GLY GLU ASN ALA ALA ALA SEQRES 11 B 435 LEU LEU ARG LEU ARG ALA ALA ALA THR ARG ALA MET ARG SEQRES 12 B 435 GLU HIS PHE TYR ASN ALA GLY TYR VAL GLU VAL ALA PRO SEQRES 13 B 435 PRO THR LEU VAL GLN THR GLN VAL GLU GLY GLY SER THR SEQRES 14 B 435 LEU PHE ASN LEU ASP TYR PHE GLY GLU GLN SER PHE LEU SEQRES 15 B 435 THR GLN SER SER GLN LEU TYR LEU GLU THR CYS ILE PRO SEQRES 16 B 435 THR LEU GLY ASP VAL PHE CYS ILE ALA GLN SER TYR ARG SEQRES 17 B 435 ALA GLU LYS SER ARG THR ARG ARG HIS LEU ALA GLU TYR SEQRES 18 B 435 ALA HIS VAL GLU ALA GLU CYS PRO PHE ILE THR LEU ASP SEQRES 19 B 435 ASP LEU MET GLU LYS ILE GLU GLU LEU VAL CYS ASP THR SEQRES 20 B 435 VAL ASP ARG LEU LEU ALA ASP GLU GLU ALA LYS LYS LEU SEQRES 21 B 435 LEU GLU HIS ILE ASN PRO LYS PHE GLN PRO PRO GLU ARG SEQRES 22 B 435 PRO PHE LEU ARG MET GLU TYR LYS ASP ALA ILE LYS TRP SEQRES 23 B 435 LEU GLN GLU HIS ASN VAL GLU ASN GLU PHE GLY ASN THR SEQRES 24 B 435 PHE THR TYR GLY GLU ASP ILE ALA GLU ALA ALA GLU ARG SEQRES 25 B 435 PHE MET THR ASP THR ILE ASN LYS PRO ILE LEU LEU ASN SEQRES 26 B 435 ARG PHE PRO SER GLU ILE LYS ALA PHE TYR MET GLN ARG SEQRES 27 B 435 ASP ALA GLN ASP ASN THR LEU THR GLU SER VAL ASP LEU SEQRES 28 B 435 LEU MET PRO GLY VAL GLY GLU ILE VAL GLY GLY SER MET SEQRES 29 B 435 ARG ILE TRP LYS PHE ASP GLU LEU SER LYS ALA PHE LYS SEQRES 30 B 435 ASN VAL GLU ILE ASP PRO LYS PRO TYR TYR TRP TYR LEU SEQRES 31 B 435 ASP GLN ARG LEU TYR GLY THR CYS PRO HIS GLY GLY TYR SEQRES 32 B 435 GLY LEU GLY LEU GLU ARG PHE ILE CYS TRP LEU THR ASN SEQRES 33 B 435 THR ASN HIS ILE ARG ASP VAL CYS LEU TYR PRO ARG PHE SEQRES 34 B 435 VAL GLY ARG CYS VAL PRO HET GOL A1549 6 HET NSS A1550 31 HET MG A1551 1 HET NSS B1550 31 HET MG B1551 1 HETNAM GOL GLYCEROL HETNAM NSS 5'-O-[N-(L-ASPARAGINYL)SULFAMOYL]ADENOSINE HETNAM MG MAGNESIUM ION HETSYN GOL GLYCERIN HETSYN NSS ASN-SA FORMUL 3 GOL C3 H8 O3 FORMUL 4 NSS 2(C14 H21 N8 O8 S 1+) FORMUL 5 MG 2(MG 2+) FORMUL 6 HOH *496(H2 O) HELIX 1 1 LYS A 115 ARG A 123 5 9 HELIX 2 2 LYS A 162 GLN A 165 5 4 HELIX 3 3 THR A 166 VAL A 172 1 7 HELIX 4 4 GLY A 213 LEU A 219 1 7 HELIX 5 5 SER A 224 ASN A 231 1 8 HELIX 6 6 ASN A 231 ILE A 236 1 6 HELIX 7 7 GLY A 238 ALA A 262 1 25 HELIX 8 8 SER A 299 GLY A 311 1 13 HELIX 9 9 THR A 345 ALA A 366 1 22 HELIX 10 10 ASP A 367 ASN A 378 1 12 HELIX 11 11 TYR A 393 HIS A 403 1 11 HELIX 12 12 ALA A 420 ASN A 432 1 13 HELIX 13 13 SER A 442 LYS A 445 5 4 HELIX 14 14 LYS A 481 GLU A 493 1 13 HELIX 15 15 PRO A 496 PRO A 498 5 3 HELIX 16 16 TYR A 499 TYR A 508 1 10 HELIX 17 17 LEU A 520 ASN A 529 1 10 HELIX 18 18 HIS A 532 CYS A 537 5 6 HELIX 19 19 LYS B 115 HIS B 122 5 8 HELIX 20 20 LYS B 162 GLN B 165 5 4 HELIX 21 21 THR B 166 VAL B 172 1 7 HELIX 22 22 ALA B 193 ASN B 195 5 3 HELIX 23 23 SER B 224 ASN B 231 1 8 HELIX 24 24 ASN B 231 ILE B 236 1 6 HELIX 25 25 GLY B 238 ALA B 262 1 25 HELIX 26 26 GLY B 279 LEU B 283 5 5 HELIX 27 27 SER B 299 GLY B 311 1 13 HELIX 28 28 THR B 345 ALA B 366 1 22 HELIX 29 29 ASP B 367 ASN B 378 1 12 HELIX 30 30 TYR B 393 HIS B 403 1 11 HELIX 31 31 ALA B 420 ASN B 432 1 13 HELIX 32 32 SER B 442 LYS B 445 5 4 HELIX 33 33 LYS B 481 VAL B 492 1 12 HELIX 34 34 PRO B 496 PRO B 498 5 3 HELIX 35 35 TYR B 499 TYR B 508 1 10 HELIX 36 36 LEU B 520 ASN B 529 1 10 HELIX 37 37 HIS B 532 CYS B 537 5 6 SHEET 1 AA 6 ARG A 126 ARG A 138 0 SHEET 2 AA 6 THR A 177 GLU A 186 -1 O VAL A 178 N GLY A 131 SHEET 3 AA 6 HIS A 197 GLY A 208 -1 O GLU A 198 N LYS A 185 SHEET 4 AA 6 PHE A 154 MET A 160 1 O GLN A 156 N LEU A 199 SHEET 5 AA 6 LEU A 143 ARG A 149 -1 O MET A 144 N LEU A 159 SHEET 6 AA 6 ARG A 126 ARG A 138 -1 O TRP A 132 N ARG A 149 SHEET 1 AB 8 VAL A 265 GLU A 266 0 SHEET 2 AB 8 VAL A 313 TYR A 320 1 N PHE A 314 O VAL A 265 SHEET 3 AB 8 GLU A 333 PRO A 342 -1 O TYR A 334 N SER A 319 SHEET 4 AB 8 HIS A 513 GLY A 519 -1 O GLY A 514 N CYS A 341 SHEET 5 AB 8 GLY A 470 MET A 477 -1 O ILE A 472 N GLY A 519 SHEET 6 AB 8 SER A 461 MET A 466 -1 O VAL A 462 N GLY A 475 SHEET 7 AB 8 ILE A 435 ASN A 438 -1 O ILE A 435 N LEU A 465 SHEET 8 AB 8 LEU A 389 GLU A 392 1 O LEU A 389 N LEU A 436 SHEET 1 AC 3 LEU A 272 VAL A 273 0 SHEET 2 AC 3 GLU A 291 LEU A 295 -1 O PHE A 294 N VAL A 273 SHEET 3 AC 3 ASN A 285 TYR A 288 -1 O LEU A 286 N SER A 293 SHEET 1 BA 6 ARG B 126 ARG B 138 0 SHEET 2 BA 6 THR B 177 GLU B 186 -1 O VAL B 178 N GLY B 131 SHEET 3 BA 6 HIS B 197 GLY B 208 -1 O GLU B 198 N LYS B 185 SHEET 4 BA 6 PHE B 154 MET B 160 1 O GLN B 156 N LEU B 199 SHEET 5 BA 6 LEU B 143 ARG B 149 -1 O MET B 144 N LEU B 159 SHEET 6 BA 6 ARG B 126 ARG B 138 -1 O TRP B 132 N ARG B 149 SHEET 1 BB 8 VAL B 265 GLU B 266 0 SHEET 2 BB 8 VAL B 313 TYR B 320 1 N PHE B 314 O VAL B 265 SHEET 3 BB 8 GLU B 333 PRO B 342 -1 O TYR B 334 N SER B 319 SHEET 4 BB 8 HIS B 513 GLY B 519 -1 O GLY B 514 N CYS B 341 SHEET 5 BB 8 GLY B 470 MET B 477 -1 O ILE B 472 N GLY B 519 SHEET 6 BB 8 SER B 461 MET B 466 -1 O VAL B 462 N GLY B 475 SHEET 7 BB 8 ILE B 435 ASN B 438 -1 O ILE B 435 N LEU B 465 SHEET 8 BB 8 LEU B 389 GLU B 392 1 O LEU B 389 N LEU B 436 SHEET 1 BC 3 LEU B 272 VAL B 273 0 SHEET 2 BC 3 GLU B 291 LEU B 295 -1 O PHE B 294 N VAL B 273 SHEET 3 BC 3 ASN B 285 TYR B 288 -1 O LEU B 286 N SER B 293 LINK OAY NSS A1550 MG MG A1551 1555 1555 2.32 LINK MG MG A1551 O HOH A2243 1555 1555 2.56 LINK MG MG A1551 O HOH A2244 1555 1555 2.52 LINK MG MG A1551 OE2 GLU A 471 1555 1555 2.46 LINK MG MG A1551 O HOH A2287 1555 1555 2.41 LINK MG MG A1551 O HOH A2247 1555 1555 2.58 LINK OAX NSS B1550 MG MG B1551 1555 1555 2.36 LINK MG MG B1551 O HOH B2175 1555 1555 2.53 LINK MG MG B1551 O HOH B2208 1555 1555 2.34 LINK MG MG B1551 OE2 GLU B 471 1555 1555 2.50 LINK MG MG B1551 O HOH B2173 1555 1555 2.40 CISPEP 1 ARG A 386 PRO A 387 0 -5.92 CISPEP 2 VAL A 547 PRO A 548 0 -5.59 CISPEP 3 ARG B 386 PRO B 387 0 3.96 CISPEP 4 VAL B 547 PRO B 548 0 -8.01 SITE 1 AC1 4 MET A 136 ARG A 137 PHE A 145 GLN A 156 SITE 1 AC2 25 GLU A 278 SER A 298 GLN A 300 ARG A 321 SITE 2 AC2 25 GLU A 323 HIS A 330 LEU A 331 TYR A 334 SITE 3 AC2 25 HIS A 336 GLU A 338 TYR A 448 GLU A 471 SITE 4 AC2 25 ILE A 472 VAL A 473 GLY A 474 ARG A 478 SITE 5 AC2 25 TYR A 516 GLY A 517 GLY A 519 ARG A 522 SITE 6 AC2 25 MG A1551 HOH A2155 HOH A2269 HOH A2286 SITE 7 AC2 25 HOH A2288 SITE 1 AC3 26 GLU B 278 SER B 298 GLN B 300 ARG B 321 SITE 2 AC3 26 GLU B 323 ARG B 329 HIS B 330 LEU B 331 SITE 3 AC3 26 TYR B 334 HIS B 336 GLU B 338 TYR B 448 SITE 4 AC3 26 GLU B 471 ILE B 472 VAL B 473 GLY B 474 SITE 5 AC3 26 ARG B 478 TYR B 516 GLY B 517 GLY B 519 SITE 6 AC3 26 ARG B 522 MG B1551 HOH B2204 HOH B2205 SITE 7 AC3 26 HOH B2206 HOH B2207 SITE 1 AC4 6 GLU A 471 NSS A1550 HOH A2243 HOH A2244 SITE 2 AC4 6 HOH A2247 HOH A2287 SITE 1 AC5 5 GLU B 471 NSS B1550 HOH B2173 HOH B2175 SITE 2 AC5 5 HOH B2208 CRYST1 55.510 125.700 144.268 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018015 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007955 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006932 0.00000