HEADER VIRAL PROTEIN 07-JUN-10 2XGU TITLE STRUCTURE OF THE N-TERMINAL DOMAIN OF CAPSID PROTEIN FROM TITLE 2 RABBIT ENDOGENOUS LENTIVIRUS (RELIK) COMPND MOL_ID: 1; COMPND 2 MOLECULE: RELIK CAPSID N-TERMINAL DOMAIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYCTOLAGUS CUNICULUS; SOURCE 3 ORGANISM_COMMON: RABBIT; SOURCE 4 ORGANISM_TAXID: 9986; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET22B; SOURCE 9 OTHER_DETAILS: SYNTHESISED RECONSTRUCTED GENE KEYWDS VIRAL PROTEIN, RETROVIRAL CAPSID EXPDTA X-RAY DIFFRACTION AUTHOR D.C.GOLDSTONE,I.A.TAYLOR,L.E.ROBERTSON,L.F.HAIRE,J.P.STOYE REVDAT 1 22-SEP-10 2XGU 0 JRNL AUTH D.C.GOLDSTONE,M.W.YAP,L.E.ROBERTSON,L.F.HAIRE,W.R.TAYLOR, JRNL AUTH 2 A.KATZOURAKIS,J.P.STOYE,I.A.TAYLOR JRNL TITL STRUCTURAL AND FUNCTIONAL ANALYSIS OF PREHISTORIC JRNL TITL 2 LENTIVIRUSES UNCOVERS AN ANCIENT MOLECULAR INTERFACE. JRNL REF CELL HOST MICROBE V. 8 248 2010 JRNL REFN ISSN 1931-3128 JRNL PMID 20833376 JRNL DOI 10.1016/J.CHOM.2010.08.006 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.502 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.659 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.03 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.48 REMARK 3 NUMBER OF REFLECTIONS : 38047 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.1963 REMARK 3 R VALUE (WORKING SET) : 0.1951 REMARK 3 FREE R VALUE : 0.2182 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.1 REMARK 3 FREE R VALUE TEST SET COUNT : 1954 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.6647 - 3.6181 0.89 2577 143 0.2026 0.2002 REMARK 3 2 3.6181 - 2.8726 0.95 2672 151 0.1827 0.2096 REMARK 3 3 2.8726 - 2.5097 0.98 2751 134 0.1802 0.2025 REMARK 3 4 2.5097 - 2.2803 0.98 2723 153 0.1819 0.2116 REMARK 3 5 2.2803 - 2.1169 0.97 2743 135 0.1720 0.1769 REMARK 3 6 2.1169 - 1.9921 0.97 2698 153 0.1787 0.2324 REMARK 3 7 1.9921 - 1.8924 0.95 2625 143 0.1823 0.2182 REMARK 3 8 1.8924 - 1.8100 0.94 2596 149 0.1777 0.2052 REMARK 3 9 1.8100 - 1.7403 0.93 2579 146 0.1879 0.2123 REMARK 3 10 1.7403 - 1.6803 0.92 2545 126 0.1985 0.2706 REMARK 3 11 1.6803 - 1.6278 0.90 2464 137 0.2078 0.2385 REMARK 3 12 1.6278 - 1.5812 0.88 2414 143 0.2026 0.2380 REMARK 3 13 1.5812 - 1.5396 0.87 2399 122 0.2167 0.2441 REMARK 3 14 1.5396 - 1.5020 0.82 2307 119 0.2429 0.2860 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.396 REMARK 3 B_SOL : 65.111 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.19 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.01 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.1 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.6 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.3514 REMARK 3 B22 (A**2) : -1.6398 REMARK 3 B33 (A**2) : 2.9912 REMARK 3 B12 (A**2) : -0.0000 REMARK 3 B13 (A**2) : -1.9097 REMARK 3 B23 (A**2) : -0.0000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2241 REMARK 3 ANGLE : 0.966 3073 REMARK 3 CHIRALITY : 0.058 351 REMARK 3 PLANARITY : 0.005 400 REMARK 3 DIHEDRAL : 13.860 833 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 16 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 1:14) REMARK 3 ORIGIN FOR THE GROUP (A): 16.4155 31.1013 -5.3829 REMARK 3 T TENSOR REMARK 3 T11: 0.1507 T22: 0.2197 REMARK 3 T33: 0.1590 T12: 0.0379 REMARK 3 T13: 0.0420 T23: -0.0203 REMARK 3 L TENSOR REMARK 3 L11: 0.8439 L22: 0.5121 REMARK 3 L33: 0.7859 L12: -0.6419 REMARK 3 L13: -0.6030 L23: 0.3625 REMARK 3 S TENSOR REMARK 3 S11: 0.2783 S12: 0.3753 S13: 0.0915 REMARK 3 S21: -0.1490 S22: -0.1771 S23: -0.2567 REMARK 3 S31: 0.1067 S32: 0.0322 S33: -0.0698 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 15:33) REMARK 3 ORIGIN FOR THE GROUP (A): 2.3103 24.2105 11.2001 REMARK 3 T TENSOR REMARK 3 T11: 0.1869 T22: 0.1579 REMARK 3 T33: 0.1504 T12: -0.0336 REMARK 3 T13: -0.0197 T23: 0.0343 REMARK 3 L TENSOR REMARK 3 L11: 1.4051 L22: 0.8573 REMARK 3 L33: 0.5914 L12: 0.0788 REMARK 3 L13: -0.0685 L23: -0.3079 REMARK 3 S TENSOR REMARK 3 S11: 0.1524 S12: -0.2397 S13: -0.3389 REMARK 3 S21: 0.0226 S22: -0.0064 S23: 0.3170 REMARK 3 S31: 0.2159 S32: -0.0546 S33: -0.1061 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 34:68) REMARK 3 ORIGIN FOR THE GROUP (A): 5.5368 32.3333 9.5348 REMARK 3 T TENSOR REMARK 3 T11: 0.1218 T22: 0.1321 REMARK 3 T33: 0.0924 T12: -0.0019 REMARK 3 T13: 0.0191 T23: -0.0080 REMARK 3 L TENSOR REMARK 3 L11: 0.8771 L22: 0.7740 REMARK 3 L33: 0.5726 L12: 0.5493 REMARK 3 L13: 0.5699 L23: 0.0368 REMARK 3 S TENSOR REMARK 3 S11: 0.0644 S12: -0.0606 S13: 0.0348 REMARK 3 S21: 0.0646 S22: -0.0151 S23: 0.0543 REMARK 3 S31: 0.2103 S32: -0.0739 S33: -0.0288 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 69:83) REMARK 3 ORIGIN FOR THE GROUP (A): 5.7149 48.7907 14.8189 REMARK 3 T TENSOR REMARK 3 T11: 0.1905 T22: 0.1220 REMARK 3 T33: 0.1634 T12: 0.0532 REMARK 3 T13: 0.0415 T23: 0.0021 REMARK 3 L TENSOR REMARK 3 L11: 1.8178 L22: 1.1682 REMARK 3 L33: 1.8578 L12: -0.3971 REMARK 3 L13: 0.7630 L23: -0.4698 REMARK 3 S TENSOR REMARK 3 S11: -0.3641 S12: -0.0953 S13: 0.3957 REMARK 3 S21: 0.5243 S22: 0.3847 S23: 0.2581 REMARK 3 S31: -0.4024 S32: -0.2219 S33: -0.0616 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 84:94) REMARK 3 ORIGIN FOR THE GROUP (A): 15.4142 58.6192 1.5014 REMARK 3 T TENSOR REMARK 3 T11: 0.2064 T22: 0.4226 REMARK 3 T33: 0.3388 T12: -0.0518 REMARK 3 T13: -0.0228 T23: 0.1166 REMARK 3 L TENSOR REMARK 3 L11: 2.9490 L22: 1.6114 REMARK 3 L33: 1.8993 L12: -0.8640 REMARK 3 L13: -0.6825 L23: 0.4320 REMARK 3 S TENSOR REMARK 3 S11: -0.2539 S12: 1.2153 S13: 0.3224 REMARK 3 S21: -0.1070 S22: -0.0790 S23: 0.3053 REMARK 3 S31: -0.2848 S32: -0.0614 S33: 0.3510 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 95:116) REMARK 3 ORIGIN FOR THE GROUP (A): 9.5968 46.3728 -0.3405 REMARK 3 T TENSOR REMARK 3 T11: 0.1377 T22: 0.2001 REMARK 3 T33: 0.1936 T12: -0.0155 REMARK 3 T13: -0.0024 T23: 0.0702 REMARK 3 L TENSOR REMARK 3 L11: 2.0064 L22: 1.1731 REMARK 3 L33: 0.3641 L12: 1.2379 REMARK 3 L13: 0.4130 L23: 0.2084 REMARK 3 S TENSOR REMARK 3 S11: -0.1955 S12: 0.3877 S13: 0.6580 REMARK 3 S21: -0.2925 S22: 0.0618 S23: 0.2351 REMARK 3 S31: -0.2699 S32: 0.1886 S33: 0.0514 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 117:135) REMARK 3 ORIGIN FOR THE GROUP (A): 11.6727 40.0264 11.4198 REMARK 3 T TENSOR REMARK 3 T11: 0.1461 T22: 0.1223 REMARK 3 T33: 0.1285 T12: -0.0174 REMARK 3 T13: 0.0235 T23: -0.0119 REMARK 3 L TENSOR REMARK 3 L11: 0.7804 L22: 0.3588 REMARK 3 L33: 0.4519 L12: 0.1964 REMARK 3 L13: 0.3194 L23: -0.2362 REMARK 3 S TENSOR REMARK 3 S11: 0.0310 S12: 0.0412 S13: 0.1068 REMARK 3 S21: 0.0531 S22: -0.0198 S23: 0.0176 REMARK 3 S31: -0.1025 S32: 0.0651 S33: -0.0235 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 136:143) REMARK 3 ORIGIN FOR THE GROUP (A): 1.9761 24.2727 27.2052 REMARK 3 T TENSOR REMARK 3 T11: 0.3661 T22: 0.2200 REMARK 3 T33: 0.3507 T12: -0.0058 REMARK 3 T13: 0.1116 T23: 0.0700 REMARK 3 L TENSOR REMARK 3 L11: 1.4343 L22: 1.7236 REMARK 3 L33: 3.0509 L12: -1.0691 REMARK 3 L13: 0.8061 L23: 0.9015 REMARK 3 S TENSOR REMARK 3 S11: -0.0910 S12: 0.0333 S13: -0.5513 REMARK 3 S21: 0.0196 S22: -0.0710 S23: 0.7171 REMARK 3 S31: 0.1374 S32: 0.3482 S33: -0.0022 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN B AND RESID 1:13) REMARK 3 ORIGIN FOR THE GROUP (A): 8.5227 33.3362 44.2207 REMARK 3 T TENSOR REMARK 3 T11: 0.1642 T22: 0.2452 REMARK 3 T33: 0.2103 T12: -0.0343 REMARK 3 T13: 0.0439 T23: -0.0011 REMARK 3 L TENSOR REMARK 3 L11: 0.4675 L22: 0.1391 REMARK 3 L33: 0.0073 L12: 0.2499 REMARK 3 L13: 0.0364 L23: 0.0122 REMARK 3 S TENSOR REMARK 3 S11: 0.2473 S12: -0.1369 S13: 0.1691 REMARK 3 S21: 0.2172 S22: -0.0717 S23: -0.0100 REMARK 3 S31: -0.0791 S32: 0.1231 S33: -0.1143 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN B AND RESID 14:45) REMARK 3 ORIGIN FOR THE GROUP (A): 19.9415 28.2080 26.8423 REMARK 3 T TENSOR REMARK 3 T11: 0.1615 T22: 0.1191 REMARK 3 T33: 0.1268 T12: 0.0265 REMARK 3 T13: -0.0268 T23: -0.0247 REMARK 3 L TENSOR REMARK 3 L11: 1.0541 L22: 1.2925 REMARK 3 L33: 0.7952 L12: 1.1255 REMARK 3 L13: 0.1323 L23: 0.2776 REMARK 3 S TENSOR REMARK 3 S11: 0.0657 S12: 0.0349 S13: -0.1911 REMARK 3 S21: 0.0477 S22: 0.0483 S23: -0.1256 REMARK 3 S31: 0.3471 S32: -0.0009 S33: -0.0882 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN B AND RESID 46:60) REMARK 3 ORIGIN FOR THE GROUP (A): 20.9409 36.7606 33.9772 REMARK 3 T TENSOR REMARK 3 T11: 0.1077 T22: 0.1440 REMARK 3 T33: 0.1371 T12: 0.0019 REMARK 3 T13: 0.0181 T23: -0.0001 REMARK 3 L TENSOR REMARK 3 L11: 0.7565 L22: 0.8848 REMARK 3 L33: 0.7021 L12: -0.2383 REMARK 3 L13: -0.2083 L23: 0.3715 REMARK 3 S TENSOR REMARK 3 S11: 0.1104 S12: 0.1187 S13: 0.2107 REMARK 3 S21: 0.0701 S22: -0.1212 S23: -0.2218 REMARK 3 S31: 0.0153 S32: -0.0539 S33: 0.0098 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (CHAIN B AND RESID 64:72) REMARK 3 ORIGIN FOR THE GROUP (A): 27.1625 41.1859 21.4609 REMARK 3 T TENSOR REMARK 3 T11: 0.1515 T22: 0.2345 REMARK 3 T33: 0.2001 T12: -0.0260 REMARK 3 T13: 0.0804 T23: -0.0211 REMARK 3 L TENSOR REMARK 3 L11: 1.1741 L22: 1.3109 REMARK 3 L33: 0.6623 L12: -0.4363 REMARK 3 L13: -0.8410 L23: 0.4528 REMARK 3 S TENSOR REMARK 3 S11: 0.1920 S12: 0.3893 S13: 0.0362 REMARK 3 S21: -0.4813 S22: -0.1303 S23: -0.4237 REMARK 3 S31: -0.2033 S32: 0.3865 S33: -0.0769 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: (CHAIN B AND RESID 73:87) REMARK 3 ORIGIN FOR THE GROUP (A): 16.7059 55.3631 25.6724 REMARK 3 T TENSOR REMARK 3 T11: 0.2113 T22: 0.1343 REMARK 3 T33: 0.2546 T12: -0.0199 REMARK 3 T13: 0.0281 T23: -0.0279 REMARK 3 L TENSOR REMARK 3 L11: 0.6363 L22: 2.7476 REMARK 3 L33: 1.4166 L12: 1.0619 REMARK 3 L13: 0.0057 L23: 0.8579 REMARK 3 S TENSOR REMARK 3 S11: -0.2718 S12: 0.0044 S13: 0.2871 REMARK 3 S21: -0.3786 S22: 0.2366 S23: 0.6946 REMARK 3 S31: -0.2202 S32: 0.0832 S33: 0.0534 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: (CHAIN B AND RESID 88:97) REMARK 3 ORIGIN FOR THE GROUP (A): 8.3232 58.8697 38.0998 REMARK 3 T TENSOR REMARK 3 T11: 0.1379 T22: 0.4458 REMARK 3 T33: 0.5282 T12: -0.0268 REMARK 3 T13: 0.0975 T23: -0.2044 REMARK 3 L TENSOR REMARK 3 L11: 0.5865 L22: 0.1632 REMARK 3 L33: 1.1067 L12: 0.2609 REMARK 3 L13: 0.7175 L23: 0.4233 REMARK 3 S TENSOR REMARK 3 S11: 0.3347 S12: -1.3787 S13: 0.4187 REMARK 3 S21: 0.1821 S22: 0.1543 S23: -0.4364 REMARK 3 S31: 0.0127 S32: -0.2816 S33: -0.3532 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: (CHAIN B AND RESID 98:127) REMARK 3 ORIGIN FOR THE GROUP (A): 14.3694 46.2698 35.8233 REMARK 3 T TENSOR REMARK 3 T11: 0.1416 T22: 0.1555 REMARK 3 T33: 0.1651 T12: -0.0071 REMARK 3 T13: 0.0298 T23: -0.0553 REMARK 3 L TENSOR REMARK 3 L11: 0.7226 L22: 1.0928 REMARK 3 L33: 0.6676 L12: -0.4098 REMARK 3 L13: -0.3571 L23: -0.4449 REMARK 3 S TENSOR REMARK 3 S11: -0.0091 S12: -0.0694 S13: 0.1816 REMARK 3 S21: -0.0090 S22: -0.0145 S23: 0.0253 REMARK 3 S31: -0.2246 S32: -0.0396 S33: -0.0069 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: (CHAIN B AND RESID 128:138) REMARK 3 ORIGIN FOR THE GROUP (A): 18.9824 38.4482 17.5808 REMARK 3 T TENSOR REMARK 3 T11: 0.1352 T22: 0.1510 REMARK 3 T33: 0.0999 T12: -0.0020 REMARK 3 T13: 0.0141 T23: -0.0204 REMARK 3 L TENSOR REMARK 3 L11: 0.3376 L22: 0.9671 REMARK 3 L33: 0.4989 L12: 0.1072 REMARK 3 L13: 0.4106 L23: 0.1412 REMARK 3 S TENSOR REMARK 3 S11: -0.0297 S12: 0.2030 S13: 0.1524 REMARK 3 S21: -0.2233 S22: 0.0264 S23: 0.0396 REMARK 3 S31: -0.2190 S32: 0.1744 S33: 0.0383 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2XGU COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-JUN-10. REMARK 100 THE PDBE ID CODE IS EBI-44172. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9805 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALING REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40134 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.50 REMARK 200 RESOLUTION RANGE LOW (A) : 35.00 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 3.7 REMARK 200 R MERGE (I) : 0.07 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 37.00 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.7 REMARK 200 R MERGE FOR SHELL (I) : 0.45 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.00 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 33.5 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16-26% PEG3350, 0.1M NA-ACETATE REMARK 280 PH 4.6 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 43.50000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 19.34000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 43.50000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 19.34000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2028 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2126 LIES ON A SPECIAL POSITION. REMARK 375 HOH B2108 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 144 REMARK 465 HIS A 145 REMARK 465 HIS A 146 REMARK 465 HIS A 147 REMARK 465 HIS A 148 REMARK 465 HIS A 149 REMARK 465 GLY B 61 REMARK 465 PHE B 62 REMARK 465 ALA B 63 REMARK 465 ASP B 90 REMARK 465 ILE B 139 REMARK 465 SER B 140 REMARK 465 PRO B 141 REMARK 465 LEU B 142 REMARK 465 GLU B 143 REMARK 465 HIS B 144 REMARK 465 HIS B 145 REMARK 465 HIS B 146 REMARK 465 HIS B 147 REMARK 465 HIS B 148 REMARK 465 HIS B 149 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 5 NE CZ NH1 NH2 REMARK 470 ARG A 8 NE CZ NH1 NH2 REMARK 470 LYS A 24 CD CE NZ REMARK 470 GLN A 67 CD OE1 NE2 REMARK 470 LEU A 68 CG CD1 CD2 REMARK 470 ASP A 90 CG OD1 OD2 REMARK 470 ARG A 137 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 143 CG CD OE1 OE2 REMARK 470 ARG B 5 CD NE CZ NH1 NH2 REMARK 470 VAL B 95 CG1 CG2 REMARK 470 GLU B 110 CG CD OE1 OE2 REMARK 470 THR B 138 OG1 CG2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B1139 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2XGV RELATED DB: PDB REMARK 900 STRUCTURE OF THE N-TERMINAL DOMAIN OF REMARK 900 CAPSID PROTEIN FROM RABBIT ENDOGENOUS REMARK 900 LENTIVIRUS (RELIK) REMARK 900 RELATED ID: 2XGY RELATED DB: PDB REMARK 900 COMPLEX OF RABBIT ENDOGENOUS LENTIVIRUS (RELIK REMARK 900 )CAPSID WITH CYCLOPHILIN A DBREF 2XGU A 1 149 PDB 2XGU 2XGU 1 149 DBREF 2XGU B 1 149 PDB 2XGU 2XGU 1 149 SEQRES 1 A 149 PRO ILE MET LEU ARG GLY GLY ARG GLN GLU TYR GLU PRO SEQRES 2 A 149 VAL GLY PRO GLY LEU ILE ALA ALA TRP LEU LYS GLN VAL SEQRES 3 A 149 GLN GLU HIS GLY LEU THR HIS PRO ALA THR ILE THR TYR SEQRES 4 A 149 PHE GLY VAL ILE SER ILE ASN PHE THR SER VAL ASP ILE SEQRES 5 A 149 ASN MET LEU LEU ASN VAL THR PRO GLY PHE ALA ALA GLU SEQRES 6 A 149 LYS GLN LEU VAL ILE ASP LYS ILE LYS GLU LYS ALA ILE SEQRES 7 A 149 ALA TRP ASP GLU MET HIS PRO PRO PRO PRO ALA ASP ALA SEQRES 8 A 149 ALA GLY PRO VAL PRO LEU THR SER ASP GLN ILE ARG GLY SEQRES 9 A 149 ILE GLY LEU SER PRO GLU GLU ALA ALA GLY PRO ARG PHE SEQRES 10 A 149 ALA ASP ALA ARG THR LEU TYR ARG THR TRP VAL LEU GLU SEQRES 11 A 149 ALA LEU GLN GLU CYS GLN ARG THR ILE SER PRO LEU GLU SEQRES 12 A 149 HIS HIS HIS HIS HIS HIS SEQRES 1 B 149 PRO ILE MET LEU ARG GLY GLY ARG GLN GLU TYR GLU PRO SEQRES 2 B 149 VAL GLY PRO GLY LEU ILE ALA ALA TRP LEU LYS GLN VAL SEQRES 3 B 149 GLN GLU HIS GLY LEU THR HIS PRO ALA THR ILE THR TYR SEQRES 4 B 149 PHE GLY VAL ILE SER ILE ASN PHE THR SER VAL ASP ILE SEQRES 5 B 149 ASN MET LEU LEU ASN VAL THR PRO GLY PHE ALA ALA GLU SEQRES 6 B 149 LYS GLN LEU VAL ILE ASP LYS ILE LYS GLU LYS ALA ILE SEQRES 7 B 149 ALA TRP ASP GLU MET HIS PRO PRO PRO PRO ALA ASP ALA SEQRES 8 B 149 ALA GLY PRO VAL PRO LEU THR SER ASP GLN ILE ARG GLY SEQRES 9 B 149 ILE GLY LEU SER PRO GLU GLU ALA ALA GLY PRO ARG PHE SEQRES 10 B 149 ALA ASP ALA ARG THR LEU TYR ARG THR TRP VAL LEU GLU SEQRES 11 B 149 ALA LEU GLN GLU CYS GLN ARG THR ILE SER PRO LEU GLU SEQRES 12 B 149 HIS HIS HIS HIS HIS HIS HET ACT B1139 4 HETNAM ACT ACETATE ION FORMUL 3 ACT C2 H3 O2 1- FORMUL 4 HOH *308(H2 O) HELIX 1 1 GLY A 15 GLY A 30 1 16 HELIX 2 2 HIS A 33 SER A 44 1 12 HELIX 3 3 THR A 48 VAL A 58 1 11 HELIX 4 4 PHE A 62 HIS A 84 1 23 HELIX 5 5 THR A 98 ARG A 103 1 6 HELIX 6 6 SER A 108 ALA A 113 1 6 HELIX 7 7 GLY A 114 ARG A 116 5 3 HELIX 8 8 PHE A 117 CYS A 135 1 19 HELIX 9 9 GLY B 15 GLY B 30 1 16 HELIX 10 10 HIS B 33 SER B 44 1 12 HELIX 11 11 THR B 48 THR B 59 1 12 HELIX 12 12 ALA B 64 HIS B 84 1 21 HELIX 13 13 THR B 98 ARG B 103 1 6 HELIX 14 14 SER B 108 ALA B 113 1 6 HELIX 15 15 GLY B 114 ARG B 116 5 3 HELIX 16 16 PHE B 117 CYS B 135 1 19 SHEET 1 AA 2 ILE A 2 ARG A 5 0 SHEET 2 AA 2 ARG A 8 TYR A 11 -1 O ARG A 8 N ARG A 5 SHEET 1 BA 2 ILE B 2 ARG B 5 0 SHEET 2 BA 2 ARG B 8 TYR B 11 -1 O ARG B 8 N ARG B 5 CISPEP 1 GLY A 93 PRO A 94 0 -1.70 CISPEP 2 GLY B 93 PRO B 94 0 -0.37 SITE 1 AC1 7 LEU A 129 GLN A 133 PRO B 34 THR B 38 SITE 2 AC1 7 GLN B 133 GLN B 136 HOH B2136 CRYST1 87.000 38.680 84.717 90.00 114.87 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011494 0.000000 0.005328 0.00000 SCALE2 0.000000 0.025853 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013011 0.00000