HEADER HYDROLASE 18-JUN-10 2XHL TITLE STRUCTURE OF A FUNCTIONAL DERIVATIVE OF CLOSTRIDIUM BOTULINUM TITLE 2 NEUROTOXIN TYPE B COMPND MOL_ID: 1; COMPND 2 MOLECULE: BOTULINUM NEUROTOXIN B LIGHT CHAIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 1-437; COMPND 5 SYNONYM: BONT/B, BONTOXILYSIN-B; COMPND 6 EC: 3.4.24.69; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: BOTULINUM NEUROTOXIN B HEAVY CHAIN; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: RESIDUES 446-858; COMPND 12 SYNONYM: BONT/B, BONTOXILYSIN-B; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM BOTULINUM; SOURCE 3 ORGANISM_TAXID: 1491; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: MODIFIED PET; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: CLOSTRIDIUM BOTULINUM; SOURCE 11 ORGANISM_TAXID: 1491; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 14 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 15 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 16 EXPRESSION_SYSTEM_PLASMID: MODIFIED PET KEYWDS HYDROLASE, METALLOPROTEASE, MEMBRANE DOMAIN, ENDOPEPTIDASE, ZINC KEYWDS 2 PROTEASE, BOTULISM, TOXIN EXPDTA X-RAY DIFFRACTION AUTHOR G.MASUYER,M.BEARD,V.A.CADD,J.A.CHADDOCK,K.R.ACHARYA REVDAT 4 31-JAN-24 2XHL 1 ATOM REVDAT 3 20-DEC-23 2XHL 1 REMARK LINK REVDAT 2 06-JUL-11 2XHL 1 JRNL REMARK REVDAT 1 01-DEC-10 2XHL 0 JRNL AUTH G.MASUYER,M.BEARD,V.A.CADD,J.A.CHADDOCK,K.R.ACHARYA JRNL TITL STRUCTURE AND ACTIVITY OF A FUNCTIONAL DERIVATIVE OF JRNL TITL 2 CLOSTRIDIUM BOTULINUM NEUROTOXIN B. JRNL REF J.STRUCT.BIOL. V. 174 52 2011 JRNL REFN ISSN 1047-8477 JRNL PMID 21078393 JRNL DOI 10.1016/J.JSB.2010.11.010 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 113.49 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 27162 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.242 REMARK 3 R VALUE (WORKING SET) : 0.240 REMARK 3 FREE R VALUE : 0.282 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1448 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1966 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2760 REMARK 3 BIN FREE R VALUE SET COUNT : 102 REMARK 3 BIN FREE R VALUE : 0.3300 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6828 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 31 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.56 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.06000 REMARK 3 B22 (A**2) : 0.48000 REMARK 3 B33 (A**2) : 2.59000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.405 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.314 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 33.922 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.900 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.853 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6968 ; 0.006 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9422 ; 0.855 ; 1.964 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 836 ; 4.371 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 349 ;35.817 ;25.903 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1271 ;13.921 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;13.914 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1042 ; 0.058 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5261 ; 0.003 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4190 ; 0.304 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6828 ; 0.570 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2778 ; 0.558 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2594 ; 1.017 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 441 REMARK 3 ORIGIN FOR THE GROUP (A): 33.6447 30.8321 18.6171 REMARK 3 T TENSOR REMARK 3 T11: 0.0392 T22: 0.0366 REMARK 3 T33: 0.0902 T12: 0.0079 REMARK 3 T13: -0.0324 T23: -0.0137 REMARK 3 L TENSOR REMARK 3 L11: 0.6457 L22: 0.6916 REMARK 3 L33: 0.9288 L12: 0.2305 REMARK 3 L13: -0.1800 L23: 0.2453 REMARK 3 S TENSOR REMARK 3 S11: 0.0493 S12: -0.0613 S13: 0.1295 REMARK 3 S21: -0.0182 S22: -0.1130 S23: 0.0530 REMARK 3 S31: -0.0376 S32: 0.0134 S33: 0.0638 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 458 B 872 REMARK 3 ORIGIN FOR THE GROUP (A): 16.1970 13.2033 34.7492 REMARK 3 T TENSOR REMARK 3 T11: 0.0381 T22: 0.0985 REMARK 3 T33: 0.0893 T12: -0.0037 REMARK 3 T13: 0.0171 T23: -0.0820 REMARK 3 L TENSOR REMARK 3 L11: 0.3387 L22: 0.3440 REMARK 3 L33: 0.4907 L12: 0.1184 REMARK 3 L13: 0.0790 L23: 0.1888 REMARK 3 S TENSOR REMARK 3 S11: 0.0159 S12: -0.1251 S13: 0.0658 REMARK 3 S21: 0.0622 S22: -0.1094 S23: 0.0960 REMARK 3 S31: 0.0894 S32: -0.0695 S33: 0.0936 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. RESIDUES 208-218,626-630 ARE DISORDERED. REMARK 4 REMARK 4 2XHL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-JUN-10. REMARK 100 THE DEPOSITION ID IS D_1290044286. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JAN-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978 REMARK 200 MONOCHROMATOR : SI(III) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28644 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 37.640 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : 0.12000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.80 REMARK 200 R MERGE FOR SHELL (I) : 0.51000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1EPW REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG3350, 0.1M BIS-TRIS-PROPANE PH REMARK 280 6.5, 0.2M SODIUM SULPHATE, PH 7.2 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 33.44500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 74.55000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.44500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 74.55000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -82.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 208 REMARK 465 ASN A 209 REMARK 465 LYS A 210 REMARK 465 GLY A 211 REMARK 465 ALA A 212 REMARK 465 SER A 213 REMARK 465 ILE A 214 REMARK 465 PHE A 215 REMARK 465 ASN A 216 REMARK 465 ARG A 217 REMARK 465 ARG A 218 REMARK 465 ILE A 442 REMARK 465 THR A 443 REMARK 465 SER A 444 REMARK 465 LYS A 445 REMARK 465 THR A 446 REMARK 465 LYS A 447 REMARK 465 SER A 448 REMARK 465 LEU A 449 REMARK 465 ILE A 450 REMARK 465 GLU A 451 REMARK 465 GLY A 452 REMARK 465 ARG A 453 REMARK 465 ASN B 454 REMARK 465 LYS B 455 REMARK 465 ALA B 456 REMARK 465 LEU B 457 REMARK 465 MET B 626 REMARK 465 ASP B 627 REMARK 465 LYS B 628 REMARK 465 ILE B 629 REMARK 465 ALA B 630 REMARK 465 SER B 873 REMARK 465 LEU B 874 REMARK 465 GLU B 875 REMARK 465 ALA B 876 REMARK 465 LEU B 877 REMARK 465 ALA B 878 REMARK 465 SER B 879 REMARK 465 GLY B 880 REMARK 465 HIS B 881 REMARK 465 HIS B 882 REMARK 465 HIS B 883 REMARK 465 HIS B 884 REMARK 465 HIS B 885 REMARK 465 HIS B 886 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 17 -72.41 -140.58 REMARK 500 SER A 63 7.29 -64.81 REMARK 500 ASP A 75 97.39 -162.36 REMARK 500 ASP A 439 4.02 85.35 REMARK 500 ASP B 500 146.64 -171.07 REMARK 500 ASP B 511 4.41 -68.90 REMARK 500 LEU B 579 -70.84 -70.02 REMARK 500 ASN B 624 -159.44 -128.18 REMARK 500 SER B 633 -151.24 60.10 REMARK 500 LEU B 643 -30.24 -130.56 REMARK 500 GLU B 648 49.22 39.27 REMARK 500 ASP B 688 19.78 57.62 REMARK 500 THR B 722 -40.58 -139.69 REMARK 500 MET B 802 -56.63 -124.00 REMARK 500 ILE B 833 -131.37 49.17 REMARK 500 ASP B 861 72.01 32.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1442 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 230 NE2 REMARK 620 2 HIS A 234 NE2 99.2 REMARK 620 3 GLU A 268 OE2 92.8 106.1 REMARK 620 4 GLU A 268 OE1 147.4 93.0 54.7 REMARK 620 5 HOH A2022 O 91.3 123.6 128.7 106.8 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1442 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1S0D RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BOTULINUM NEUROTOXIN TYPE B AT PH 5.5 REMARK 900 RELATED ID: 1EPW RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CLOSTRIDIUM NEUROTOXIN TYPE B REMARK 900 RELATED ID: 1G9B RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CLOSTRIDIUM BOTULINUM NEUROTOXIN BCOMPLEXED REMARK 900 WITH AN INHIBITOR (EXPERIMENT 1) REMARK 900 RELATED ID: 1F82 RELATED DB: PDB REMARK 900 BOTULINUM NEUROTOXIN TYPE B CATALYTIC DOMAIN REMARK 900 RELATED ID: 2ETF RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF FULL LENGTH BOTULINUM NEUROTOXIN (TYPEB) LIGHT REMARK 900 CHAIN REMARK 900 RELATED ID: 1I1E RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CLOSTRIDIUM BOTULINUM NEUROTOXIN BCOMPLEXED REMARK 900 WITH DOXORUBICIN REMARK 900 RELATED ID: 1S0F RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BOTULINUM NEUROTOXIN TYPE B AT PH 7.0 REMARK 900 RELATED ID: 1G9A RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CLOSTRIDIUM BOTULINUM NEUROTOXIN BCOMPLEXED REMARK 900 WITH AN INHIBITOR (EXPERIMENT 3) REMARK 900 RELATED ID: 1G9C RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CLOSTRIDIUM BOTULINUM NEUROTOXIN BCOMPLEXED REMARK 900 WITH AN INHIBITOR (EXPERIMENT 4) REMARK 900 RELATED ID: 1S0B RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BOTULINUM NEUROTOXIN TYPE B AT PH 4.0 REMARK 900 RELATED ID: 1S0G RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BOTULINUM NEUROTOXIN TYPE B APO FORM REMARK 900 RELATED ID: 1S0C RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BOTULINUM NEUROTOXIN TYPE B AT PH 5.0 REMARK 900 RELATED ID: 1G9D RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CLOSTRIDIUM BOTULINUM NEUROTOXIN BCOMPLEXED REMARK 900 WITH AN INHIBITOR (EXPERIMENT 2) REMARK 900 RELATED ID: 1Z0H RELATED DB: PDB REMARK 900 N-TERMINAL HELIX REORIENTS IN RECOMBINANT C -FRAGMENT OFCLOSTRIDIUM REMARK 900 BOTULINUM TYPE B REMARK 900 RELATED ID: 1F31 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CLOSTRIDIUM BOTULINUM NEUROTOXIN B COMPLEXED REMARK 900 WITH A TRISACCHARIDE REMARK 900 RELATED ID: 1S0E RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF BOTULINUM NEUROTOXIN TYPE B AT PH 6.0 REMARK 999 REMARK 999 SEQUENCE REMARK 999 OWING TO THE PRESENCE OF AN INTERNAL EXPRESSION TAG FOR REMARK 999 CLEAVAGE BETWEEN THE TWO CHAINS THE NUMBERING OF THE B-CHAIN REMARK 999 IS ADVANCED BY FIFTEEN POSITIONS COMPARED WITH THE REMARK 999 UNENGINEERED CASE. DBREF 2XHL A 1 437 UNP P10844 BXB_CLOBO 1 437 DBREF 2XHL B 461 873 UNP P10844 BXB_CLOBO 446 858 SEQADV 2XHL VAL A 438 UNP P10844 EXPRESSION TAG SEQADV 2XHL ASP A 439 UNP P10844 EXPRESSION TAG SEQADV 2XHL GLY A 440 UNP P10844 EXPRESSION TAG SEQADV 2XHL ILE A 441 UNP P10844 EXPRESSION TAG SEQADV 2XHL ILE A 442 UNP P10844 EXPRESSION TAG SEQADV 2XHL THR A 443 UNP P10844 EXPRESSION TAG SEQADV 2XHL SER A 444 UNP P10844 EXPRESSION TAG SEQADV 2XHL LYS A 445 UNP P10844 EXPRESSION TAG SEQADV 2XHL THR A 446 UNP P10844 EXPRESSION TAG SEQADV 2XHL LYS A 447 UNP P10844 EXPRESSION TAG SEQADV 2XHL SER A 448 UNP P10844 EXPRESSION TAG SEQADV 2XHL LEU A 449 UNP P10844 EXPRESSION TAG SEQADV 2XHL ILE A 450 UNP P10844 EXPRESSION TAG SEQADV 2XHL GLU A 451 UNP P10844 EXPRESSION TAG SEQADV 2XHL GLY A 452 UNP P10844 EXPRESSION TAG SEQADV 2XHL ARG A 453 UNP P10844 EXPRESSION TAG SEQADV 2XHL ASN B 454 UNP P10844 EXPRESSION TAG SEQADV 2XHL LYS B 455 UNP P10844 EXPRESSION TAG SEQADV 2XHL ALA B 456 UNP P10844 EXPRESSION TAG SEQADV 2XHL LEU B 457 UNP P10844 EXPRESSION TAG SEQADV 2XHL ASN B 458 UNP P10844 EXPRESSION TAG SEQADV 2XHL LEU B 459 UNP P10844 EXPRESSION TAG SEQADV 2XHL GLN B 460 UNP P10844 EXPRESSION TAG SEQADV 2XHL LEU B 874 UNP P10844 EXPRESSION TAG SEQADV 2XHL GLU B 875 UNP P10844 EXPRESSION TAG SEQADV 2XHL ALA B 876 UNP P10844 EXPRESSION TAG SEQADV 2XHL LEU B 877 UNP P10844 EXPRESSION TAG SEQADV 2XHL ALA B 878 UNP P10844 EXPRESSION TAG SEQADV 2XHL SER B 879 UNP P10844 EXPRESSION TAG SEQADV 2XHL GLY B 880 UNP P10844 EXPRESSION TAG SEQADV 2XHL HIS B 881 UNP P10844 EXPRESSION TAG SEQADV 2XHL HIS B 882 UNP P10844 EXPRESSION TAG SEQADV 2XHL HIS B 883 UNP P10844 EXPRESSION TAG SEQADV 2XHL HIS B 884 UNP P10844 EXPRESSION TAG SEQADV 2XHL HIS B 885 UNP P10844 EXPRESSION TAG SEQADV 2XHL HIS B 886 UNP P10844 EXPRESSION TAG SEQRES 1 A 453 MET PRO VAL THR ILE ASN ASN PHE ASN TYR ASN ASP PRO SEQRES 2 A 453 ILE ASP ASN ASN ASN ILE ILE MET MET GLU PRO PRO PHE SEQRES 3 A 453 ALA ARG GLY THR GLY ARG TYR TYR LYS ALA PHE LYS ILE SEQRES 4 A 453 THR ASP ARG ILE TRP ILE ILE PRO GLU ARG TYR THR PHE SEQRES 5 A 453 GLY TYR LYS PRO GLU ASP PHE ASN LYS SER SER GLY ILE SEQRES 6 A 453 PHE ASN ARG ASP VAL CYS GLU TYR TYR ASP PRO ASP TYR SEQRES 7 A 453 LEU ASN THR ASN ASP LYS LYS ASN ILE PHE LEU GLN THR SEQRES 8 A 453 MET ILE LYS LEU PHE ASN ARG ILE LYS SER LYS PRO LEU SEQRES 9 A 453 GLY GLU LYS LEU LEU GLU MET ILE ILE ASN GLY ILE PRO SEQRES 10 A 453 TYR LEU GLY ASP ARG ARG VAL PRO LEU GLU GLU PHE ASN SEQRES 11 A 453 THR ASN ILE ALA SER VAL THR VAL ASN LYS LEU ILE SER SEQRES 12 A 453 ASN PRO GLY GLU VAL GLU ARG LYS LYS GLY ILE PHE ALA SEQRES 13 A 453 ASN LEU ILE ILE PHE GLY PRO GLY PRO VAL LEU ASN GLU SEQRES 14 A 453 ASN GLU THR ILE ASP ILE GLY ILE GLN ASN HIS PHE ALA SEQRES 15 A 453 SER ARG GLU GLY PHE GLY GLY ILE MET GLN MET LYS PHE SEQRES 16 A 453 CYS PRO GLU TYR VAL SER VAL PHE ASN ASN VAL GLN GLU SEQRES 17 A 453 ASN LYS GLY ALA SER ILE PHE ASN ARG ARG GLY TYR PHE SEQRES 18 A 453 SER ASP PRO ALA LEU ILE LEU MET HIS GLU LEU ILE HIS SEQRES 19 A 453 VAL LEU HIS GLY LEU TYR GLY ILE LYS VAL ASP ASP LEU SEQRES 20 A 453 PRO ILE VAL PRO ASN GLU LYS LYS PHE PHE MET GLN SER SEQRES 21 A 453 THR ASP ALA ILE GLN ALA GLU GLU LEU TYR THR PHE GLY SEQRES 22 A 453 GLY GLN ASP PRO SER ILE ILE THR PRO SER THR ASP LYS SEQRES 23 A 453 SER ILE TYR ASP LYS VAL LEU GLN ASN PHE ARG GLY ILE SEQRES 24 A 453 VAL ASP ARG LEU ASN LYS VAL LEU VAL CYS ILE SER ASP SEQRES 25 A 453 PRO ASN ILE ASN ILE ASN ILE TYR LYS ASN LYS PHE LYS SEQRES 26 A 453 ASP LYS TYR LYS PHE VAL GLU ASP SER GLU GLY LYS TYR SEQRES 27 A 453 SER ILE ASP VAL GLU SER PHE ASP LYS LEU TYR LYS SER SEQRES 28 A 453 LEU MET PHE GLY PHE THR GLU THR ASN ILE ALA GLU ASN SEQRES 29 A 453 TYR LYS ILE LYS THR ARG ALA SER TYR PHE SER ASP SER SEQRES 30 A 453 LEU PRO PRO VAL LYS ILE LYS ASN LEU LEU ASP ASN GLU SEQRES 31 A 453 ILE TYR THR ILE GLU GLU GLY PHE ASN ILE SER ASP LYS SEQRES 32 A 453 ASP MET GLU LYS GLU TYR ARG GLY GLN ASN LYS ALA ILE SEQRES 33 A 453 ASN LYS GLN ALA TYR GLU GLU ILE SER LYS GLU HIS LEU SEQRES 34 A 453 ALA VAL TYR LYS ILE GLN MET CYS VAL ASP GLY ILE ILE SEQRES 35 A 453 THR SER LYS THR LYS SER LEU ILE GLU GLY ARG SEQRES 1 B 433 ASN LYS ALA LEU ASN LEU GLN CYS ILE ASP VAL ASP ASN SEQRES 2 B 433 GLU ASP LEU PHE PHE ILE ALA ASP LYS ASN SER PHE SER SEQRES 3 B 433 ASP ASP LEU SER LYS ASN GLU ARG ILE GLU TYR ASN THR SEQRES 4 B 433 GLN SER ASN TYR ILE GLU ASN ASP PHE PRO ILE ASN GLU SEQRES 5 B 433 LEU ILE LEU ASP THR ASP LEU ILE SER LYS ILE GLU LEU SEQRES 6 B 433 PRO SER GLU ASN THR GLU SER LEU THR ASP PHE ASN VAL SEQRES 7 B 433 ASP VAL PRO VAL TYR GLU LYS GLN PRO ALA ILE LYS LYS SEQRES 8 B 433 ILE PHE THR ASP GLU ASN THR ILE PHE GLN TYR LEU TYR SEQRES 9 B 433 SER GLN THR PHE PRO LEU ASP ILE ARG ASP ILE SER LEU SEQRES 10 B 433 THR SER SER PHE ASP ASP ALA LEU LEU PHE SER ASN LYS SEQRES 11 B 433 VAL TYR SER PHE PHE SER MET ASP TYR ILE LYS THR ALA SEQRES 12 B 433 ASN LYS VAL VAL GLU ALA GLY LEU PHE ALA GLY TRP VAL SEQRES 13 B 433 LYS GLN ILE VAL ASN ASP PHE VAL ILE GLU ALA ASN LYS SEQRES 14 B 433 SER ASN THR MET ASP LYS ILE ALA ASP ILE SER LEU ILE SEQRES 15 B 433 VAL PRO TYR ILE GLY LEU ALA LEU ASN VAL GLY ASN GLU SEQRES 16 B 433 THR ALA LYS GLY ASN PHE GLU ASN ALA PHE GLU ILE ALA SEQRES 17 B 433 GLY ALA SER ILE LEU LEU GLU PHE ILE PRO GLU LEU LEU SEQRES 18 B 433 ILE PRO VAL VAL GLY ALA PHE LEU LEU GLU SER TYR ILE SEQRES 19 B 433 ASP ASN LYS ASN LYS ILE ILE LYS THR ILE ASP ASN ALA SEQRES 20 B 433 LEU THR LYS ARG ASN GLU LYS TRP SER ASP MET TYR GLY SEQRES 21 B 433 LEU ILE VAL ALA GLN TRP LEU SER THR VAL ASN THR GLN SEQRES 22 B 433 PHE TYR THR ILE LYS GLU GLY MET TYR LYS ALA LEU ASN SEQRES 23 B 433 TYR GLN ALA GLN ALA LEU GLU GLU ILE ILE LYS TYR ARG SEQRES 24 B 433 TYR ASN ILE TYR SER GLU LYS GLU LYS SER ASN ILE ASN SEQRES 25 B 433 ILE ASP PHE ASN ASP ILE ASN SER LYS LEU ASN GLU GLY SEQRES 26 B 433 ILE ASN GLN ALA ILE ASP ASN ILE ASN ASN PHE ILE ASN SEQRES 27 B 433 GLY CYS SER VAL SER TYR LEU MET LYS LYS MET ILE PRO SEQRES 28 B 433 LEU ALA VAL GLU LYS LEU LEU ASP PHE ASP ASN THR LEU SEQRES 29 B 433 LYS LYS ASN LEU LEU ASN TYR ILE ASP GLU ASN LYS LEU SEQRES 30 B 433 TYR LEU ILE GLY SER ALA GLU TYR GLU LYS SER LYS VAL SEQRES 31 B 433 ASN LYS TYR LEU LYS THR ILE MET PRO PHE ASP LEU SER SEQRES 32 B 433 ILE TYR THR ASN ASP THR ILE LEU ILE GLU MET PHE ASN SEQRES 33 B 433 LYS TYR ASN SER LEU GLU ALA LEU ALA SER GLY HIS HIS SEQRES 34 B 433 HIS HIS HIS HIS HET ZN A1442 1 HETNAM ZN ZINC ION FORMUL 3 ZN ZN 2+ FORMUL 4 HOH *31(H2 O) HELIX 1 1 PRO A 24 ARG A 28 5 5 HELIX 2 2 LYS A 55 ASN A 60 5 6 HELIX 3 3 THR A 81 LYS A 100 1 20 HELIX 4 4 LYS A 102 GLY A 115 1 14 HELIX 5 5 ALA A 182 GLU A 185 5 4 HELIX 6 6 ASP A 223 TYR A 240 1 18 HELIX 7 7 GLN A 265 GLY A 273 1 9 HELIX 8 8 GLN A 275 ILE A 280 5 6 HELIX 9 9 THR A 281 ASN A 304 1 24 HELIX 10 10 ASN A 316 TYR A 328 1 13 HELIX 11 11 ASP A 341 GLY A 355 1 15 HELIX 12 12 THR A 357 TYR A 365 1 9 HELIX 13 13 ILE A 400 ASP A 404 5 5 HELIX 14 14 GLU A 406 GLN A 412 5 7 HELIX 15 15 SER A 425 GLU A 427 5 3 HELIX 16 16 GLU B 467 LEU B 469 5 3 HELIX 17 17 ASP B 474 PHE B 478 5 5 HELIX 18 18 ASP B 480 LYS B 484 5 5 HELIX 19 19 PRO B 502 ASP B 509 1 8 HELIX 20 20 THR B 510 ILE B 513 5 4 HELIX 21 21 THR B 551 SER B 558 1 8 HELIX 22 22 SER B 573 PHE B 580 1 8 HELIX 23 23 SER B 589 ALA B 596 1 8 HELIX 24 24 LEU B 604 ASN B 621 1 18 HELIX 25 25 TYR B 638 ASN B 644 1 7 HELIX 26 26 ASN B 653 GLY B 662 1 10 HELIX 27 27 ALA B 663 LEU B 666 5 4 HELIX 28 28 ASN B 689 SER B 721 1 33 HELIX 29 29 VAL B 723 TYR B 756 1 34 HELIX 30 30 SER B 757 ILE B 764 1 8 HELIX 31 31 ASP B 767 MET B 802 1 36 HELIX 32 32 MET B 802 ASN B 828 1 27 HELIX 33 33 SER B 835 LEU B 847 1 13 HELIX 34 34 ASP B 854 TYR B 858 5 5 HELIX 35 35 ILE B 863 ASN B 869 1 7 SHEET 1 AA 9 GLU A 171 ILE A 173 0 SHEET 2 AA 9 MET A 191 LYS A 194 -1 O GLN A 192 N ILE A 173 SHEET 3 AA 9 LEU A 158 PHE A 161 1 O ILE A 159 N MET A 193 SHEET 4 AA 9 ILE A 43 ILE A 46 1 O TRP A 44 N ILE A 160 SHEET 5 AA 9 TYR A 34 THR A 40 -1 O PHE A 37 N ILE A 45 SHEET 6 AA 9 ILE A 19 GLU A 23 -1 O ILE A 20 N ALA A 36 SHEET 7 AA 9 THR A 137 LEU A 141 -1 O ASN A 139 N GLU A 23 SHEET 8 AA 9 LYS A 151 PHE A 155 -1 O LYS A 152 N LYS A 140 SHEET 9 AA 9 ASN B 522 THR B 523 -1 O THR B 523 N GLY A 153 SHEET 1 AB 2 GLY A 64 ILE A 65 0 SHEET 2 AB 2 GLN B 539 PRO B 540 -1 O GLN B 539 N ILE A 65 SHEET 1 AC 2 GLU A 72 TYR A 73 0 SHEET 2 AC 2 LEU A 429 ALA A 430 -1 O ALA A 430 N GLU A 72 SHEET 1 AD 2 GLU A 128 PHE A 129 0 SHEET 2 AD 2 VAL A 308 CYS A 309 1 O VAL A 308 N PHE A 129 SHEET 1 AE 4 TYR A 220 PHE A 221 0 SHEET 2 AE 4 TYR A 199 PHE A 203 -1 O PHE A 203 N TYR A 220 SHEET 3 AE 4 LEU A 378 ILE A 383 -1 O LEU A 378 N VAL A 202 SHEET 4 AE 4 TYR A 421 GLU A 422 -1 O GLU A 422 N LYS A 382 SHEET 1 AF 2 VAL A 331 GLU A 332 0 SHEET 2 AF 2 TYR A 338 SER A 339 -1 O SER A 339 N VAL A 331 SHEET 1 BA 3 CYS B 461 ASP B 465 0 SHEET 2 BA 3 LYS A 433 CYS A 437 -1 O ILE A 434 N VAL B 464 SHEET 3 BA 3 ILE B 542 PHE B 546 1 O LYS B 543 N GLN A 435 SHEET 1 BB 2 GLU B 486 ILE B 488 0 SHEET 2 BB 2 PHE B 681 LEU B 683 1 O LEU B 682 N ILE B 488 SHEET 1 BC 2 SER B 569 THR B 571 0 SHEET 2 BC 2 LYS B 583 TYR B 585 1 O VAL B 584 N THR B 571 SSBOND 1 CYS A 437 CYS B 461 1555 1555 2.04 LINK NE2 HIS A 230 ZN ZN A1442 1555 1555 2.29 LINK NE2 HIS A 234 ZN ZN A1442 1555 1555 2.20 LINK OE2 GLU A 268 ZN ZN A1442 1555 1555 2.31 LINK OE1 GLU A 268 ZN ZN A1442 1555 1555 2.48 LINK ZN ZN A1442 O HOH A2022 1555 1555 2.14 SITE 1 AC1 4 HIS A 230 HIS A 234 GLU A 268 HOH A2022 CRYST1 66.890 149.100 113.490 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014950 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006707 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008811 0.00000