HEADER TRANSFERASE 28-JUN-10 2XI5 TITLE N-TERMINAL ENDONUCLEASE DOMAIN OF LA CROSSE VIRUS L-PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA POLYMERASE L; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: N-TERMINAL ENDONUCLEASE DOMAIN, RESIDUES 1-183; COMPND 5 SYNONYM: L-PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BUNYAVIRUS LA CROSSE; SOURCE 3 ORGANISM_TAXID: 11577; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET9A KEYWDS TRANSFERASE, BUNYAVIRIDAE, ORTHOBUNYAVIRUS, AEDES TRISERIATUS, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.REGUERA,F.WEBER,S.CUSACK REVDAT 2 18-JUL-12 2XI5 1 JRNL REMARK VERSN CRYST1 REVDAT 1 06-OCT-10 2XI5 0 JRNL AUTH J.REGUERA,F.WEBER,S.CUSACK JRNL TITL BUNYAVIRIDAE RNA POLYMERASES (L-PROTEIN) HAVE AN N-TERMINAL, JRNL TITL 2 INFLUENZA-LIKE ENDONUCLEASE DOMAIN, ESSENTIAL FOR VIRAL CAP- JRNL TITL 3 DEPENDENT TRANSCRIPTION. JRNL REF PLOS PATHOG. V. 6 1101 2010 JRNL REFN ISSN 1553-7366 JRNL PMID 20862319 JRNL DOI 10.1371/JOURNAL.PPAT.1001101 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.16 REMARK 3 DATA CUTOFF (SIGMA(F)) : NONE REMARK 3 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 3 NUMBER OF REFLECTIONS : 62367 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.0 REMARK 3 FREE R VALUE TEST SET COUNT : 3290 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4526 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.56 REMARK 3 BIN R VALUE (WORKING SET) : 0.2620 REMARK 3 BIN FREE R VALUE SET COUNT : 257 REMARK 3 BIN FREE R VALUE : 0.2970 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6212 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 465 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.54 REMARK 3 B22 (A**2) : 0.54 REMARK 3 B33 (A**2) : -0.82 REMARK 3 B12 (A**2) : 0.27 REMARK 3 B13 (A**2) : 0.00 REMARK 3 B23 (A**2) : 0.00 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.189 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.167 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.114 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.448 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6353 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 4270 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8651 ; 1.547 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10405 ; 0.926 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 754 ; 5.817 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 349 ;38.059 ;24.470 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1114 ;15.727 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 45 ;15.761 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 977 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7041 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1316 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3740 ; 0.956 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1464 ; 0.220 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6162 ; 1.852 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2613 ; 2.816 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2480 ; 4.675 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 2XI5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-JUL-10. REMARK 100 THE PDBE ID CODE IS EBI-44376. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-OCT-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD (QUANTUM Q315R) REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 65657 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.20 REMARK 200 RESOLUTION RANGE LOW (A) : 50.00 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.00 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 200 DATA REDUNDANCY : 11.1 REMARK 200 R MERGE (I) : 0.08 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.50 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.7 REMARK 200 DATA REDUNDANCY IN SHELL : 10.8 REMARK 200 R MERGE FOR SHELL (I) : 0.59 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.20 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTOSHARP REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.9 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15-20 MG PER ML PROTEIN IN 20 MM REMARK 280 HEPES 150 MM NACL 5MM MNCL2 AND 2.5 MM BETA-MERCAPTO-ETHANOL REMARK 280 AT PH 7.5 AND A RESERVOIR COMPOSITION OF 3.4 M NA-FORMATE 0.1 REMARK 280 M TRIS-HCL PH 8 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 98.10667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 196.21333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 147.16000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 245.26667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 49.05333 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 98.10667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 196.21333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 245.26667 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 147.16000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 49.05333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 18510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 67950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -93.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, D, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -49.05333 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH C2089 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ALA C 183 CA C O CB REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG B 63 O LEU B 120 2.19 REMARK 500 O LEU D 69 O HOH D 2057 2.05 REMARK 500 O HOH A 2013 O HOH A 2057 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 176 CD GLU A 176 OE1 0.081 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 39 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG A 114 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 PRO B 54 C - N - CA ANGL. DEV. = 12.9 DEGREES REMARK 500 ARG B 114 NE - CZ - NH1 ANGL. DEV. = 5.1 DEGREES REMARK 500 ARG B 114 NE - CZ - NH2 ANGL. DEV. = -5.2 DEGREES REMARK 500 ARG C 114 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG C 114 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG D 114 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG D 114 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 2 -140.41 -64.84 REMARK 500 ARG A 63 78.45 -152.85 REMARK 500 HIS A 75 75.40 -109.18 REMARK 500 ASP B 52 57.68 72.27 REMARK 500 ASP C 2 146.56 -39.01 REMARK 500 ARG C 17 -0.21 -141.79 REMARK 500 ASP C 52 73.44 39.81 REMARK 500 ASP D 52 76.40 47.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A1184 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 92 OD1 REMARK 620 2 HOH A2110 O 89.1 REMARK 620 3 HOH A2111 O 102.3 79.3 REMARK 620 4 HIS A 34 NE2 168.3 92.2 89.4 REMARK 620 5 ASP A 79 OD2 78.2 87.4 166.7 90.3 REMARK 620 6 TYR A 93 O 91.9 171.7 92.5 88.4 100.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B1184 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 79 OD2 REMARK 620 2 ASP B 92 OD1 81.8 REMARK 620 3 TYR B 93 O 103.5 95.1 REMARK 620 4 HOH B2130 O 80.6 93.3 171.1 REMARK 620 5 HIS B 34 NE2 89.5 169.4 81.1 91.1 REMARK 620 6 HOH B2129 O 163.2 101.2 92.8 82.7 88.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN C1184 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 79 OD2 REMARK 620 2 HIS C 34 NE2 88.5 REMARK 620 3 ASP C 92 OD1 82.2 170.5 REMARK 620 4 TYR C 93 O 106.4 85.0 96.0 REMARK 620 5 HOH C2097 O 161.4 89.8 99.6 91.9 REMARK 620 6 HOH C2098 O 83.1 92.8 87.8 170.1 78.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN D1184 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 34 NE2 REMARK 620 2 ASP D 79 OD2 86.9 REMARK 620 3 TYR D 93 O 84.4 102.3 REMARK 620 4 HOH D2125 O 90.6 82.6 172.8 REMARK 620 5 HOH D2126 O 88.7 163.5 93.1 81.5 REMARK 620 6 ASP D 92 OD1 170.9 84.6 94.0 91.7 100.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A1184 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B1184 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN C1184 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN D1184 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2XI7 RELATED DB: PDB REMARK 900 N-TERMINAL ENDONUCLEASE DOMAIN OF LA CROSSE REMARK 900 VIRUS L-PROTEIN DBREF 2XI5 A 1 183 UNP A5HC98 A5HC98_BUNLC 1 183 DBREF 2XI5 B 1 183 UNP A5HC98 A5HC98_BUNLC 1 183 DBREF 2XI5 C 1 183 UNP A5HC98 A5HC98_BUNLC 1 183 DBREF 2XI5 D 1 183 UNP A5HC98 A5HC98_BUNLC 1 183 SEQADV 2XI5 GLY A 0 UNP A5HC98 EXPRESSION TAG SEQADV 2XI5 GLY B 0 UNP A5HC98 EXPRESSION TAG SEQADV 2XI5 GLY C 0 UNP A5HC98 EXPRESSION TAG SEQADV 2XI5 GLY D 0 UNP A5HC98 EXPRESSION TAG SEQRES 1 A 184 GLY MET ASP TYR GLN GLU TYR GLN GLN PHE LEU ALA ARG SEQRES 2 A 184 ILE ASN THR ALA ARG ASP ALA CYS VAL ALA LYS ASP ILE SEQRES 3 A 184 ASP VAL ASP LEU LEU MET ALA ARG HIS ASP TYR PHE GLY SEQRES 4 A 184 ARG GLU LEU CYS LYS SER LEU ASN ILE GLU TYR ARG ASN SEQRES 5 A 184 ASP VAL PRO PHE ILE ASP ILE ILE LEU ASP ILE ARG PRO SEQRES 6 A 184 GLU VAL ASP PRO LEU THR ILE ASP ALA PRO HIS ILE THR SEQRES 7 A 184 PRO ASP ASN TYR LEU TYR ILE ASN ASN VAL LEU TYR ILE SEQRES 8 A 184 ILE ASP TYR LYS VAL SER VAL SER ASN GLU SER SER VAL SEQRES 9 A 184 ILE THR TYR ASP LYS TYR TYR GLU LEU THR ARG ASP ILE SEQRES 10 A 184 SER ASP ARG LEU SER ILE PRO ILE GLU ILE VAL ILE ILE SEQRES 11 A 184 ARG ILE ASP PRO VAL SER ARG ASP LEU HIS ILE ASN SER SEQRES 12 A 184 ASP ARG PHE LYS GLU LEU TYR PRO THR ILE VAL VAL ASP SEQRES 13 A 184 ILE ASN PHE ASN GLN PHE PHE ASP LEU LYS GLN LEU LEU SEQRES 14 A 184 TYR GLU LYS PHE GLY ASP ASP GLU GLU PHE LEU LEU LYS SEQRES 15 A 184 VAL ALA SEQRES 1 B 184 GLY MET ASP TYR GLN GLU TYR GLN GLN PHE LEU ALA ARG SEQRES 2 B 184 ILE ASN THR ALA ARG ASP ALA CYS VAL ALA LYS ASP ILE SEQRES 3 B 184 ASP VAL ASP LEU LEU MET ALA ARG HIS ASP TYR PHE GLY SEQRES 4 B 184 ARG GLU LEU CYS LYS SER LEU ASN ILE GLU TYR ARG ASN SEQRES 5 B 184 ASP VAL PRO PHE ILE ASP ILE ILE LEU ASP ILE ARG PRO SEQRES 6 B 184 GLU VAL ASP PRO LEU THR ILE ASP ALA PRO HIS ILE THR SEQRES 7 B 184 PRO ASP ASN TYR LEU TYR ILE ASN ASN VAL LEU TYR ILE SEQRES 8 B 184 ILE ASP TYR LYS VAL SER VAL SER ASN GLU SER SER VAL SEQRES 9 B 184 ILE THR TYR ASP LYS TYR TYR GLU LEU THR ARG ASP ILE SEQRES 10 B 184 SER ASP ARG LEU SER ILE PRO ILE GLU ILE VAL ILE ILE SEQRES 11 B 184 ARG ILE ASP PRO VAL SER ARG ASP LEU HIS ILE ASN SER SEQRES 12 B 184 ASP ARG PHE LYS GLU LEU TYR PRO THR ILE VAL VAL ASP SEQRES 13 B 184 ILE ASN PHE ASN GLN PHE PHE ASP LEU LYS GLN LEU LEU SEQRES 14 B 184 TYR GLU LYS PHE GLY ASP ASP GLU GLU PHE LEU LEU LYS SEQRES 15 B 184 VAL ALA SEQRES 1 C 184 GLY MET ASP TYR GLN GLU TYR GLN GLN PHE LEU ALA ARG SEQRES 2 C 184 ILE ASN THR ALA ARG ASP ALA CYS VAL ALA LYS ASP ILE SEQRES 3 C 184 ASP VAL ASP LEU LEU MET ALA ARG HIS ASP TYR PHE GLY SEQRES 4 C 184 ARG GLU LEU CYS LYS SER LEU ASN ILE GLU TYR ARG ASN SEQRES 5 C 184 ASP VAL PRO PHE ILE ASP ILE ILE LEU ASP ILE ARG PRO SEQRES 6 C 184 GLU VAL ASP PRO LEU THR ILE ASP ALA PRO HIS ILE THR SEQRES 7 C 184 PRO ASP ASN TYR LEU TYR ILE ASN ASN VAL LEU TYR ILE SEQRES 8 C 184 ILE ASP TYR LYS VAL SER VAL SER ASN GLU SER SER VAL SEQRES 9 C 184 ILE THR TYR ASP LYS TYR TYR GLU LEU THR ARG ASP ILE SEQRES 10 C 184 SER ASP ARG LEU SER ILE PRO ILE GLU ILE VAL ILE ILE SEQRES 11 C 184 ARG ILE ASP PRO VAL SER ARG ASP LEU HIS ILE ASN SER SEQRES 12 C 184 ASP ARG PHE LYS GLU LEU TYR PRO THR ILE VAL VAL ASP SEQRES 13 C 184 ILE ASN PHE ASN GLN PHE PHE ASP LEU LYS GLN LEU LEU SEQRES 14 C 184 TYR GLU LYS PHE GLY ASP ASP GLU GLU PHE LEU LEU LYS SEQRES 15 C 184 VAL ALA SEQRES 1 D 184 GLY MET ASP TYR GLN GLU TYR GLN GLN PHE LEU ALA ARG SEQRES 2 D 184 ILE ASN THR ALA ARG ASP ALA CYS VAL ALA LYS ASP ILE SEQRES 3 D 184 ASP VAL ASP LEU LEU MET ALA ARG HIS ASP TYR PHE GLY SEQRES 4 D 184 ARG GLU LEU CYS LYS SER LEU ASN ILE GLU TYR ARG ASN SEQRES 5 D 184 ASP VAL PRO PHE ILE ASP ILE ILE LEU ASP ILE ARG PRO SEQRES 6 D 184 GLU VAL ASP PRO LEU THR ILE ASP ALA PRO HIS ILE THR SEQRES 7 D 184 PRO ASP ASN TYR LEU TYR ILE ASN ASN VAL LEU TYR ILE SEQRES 8 D 184 ILE ASP TYR LYS VAL SER VAL SER ASN GLU SER SER VAL SEQRES 9 D 184 ILE THR TYR ASP LYS TYR TYR GLU LEU THR ARG ASP ILE SEQRES 10 D 184 SER ASP ARG LEU SER ILE PRO ILE GLU ILE VAL ILE ILE SEQRES 11 D 184 ARG ILE ASP PRO VAL SER ARG ASP LEU HIS ILE ASN SER SEQRES 12 D 184 ASP ARG PHE LYS GLU LEU TYR PRO THR ILE VAL VAL ASP SEQRES 13 D 184 ILE ASN PHE ASN GLN PHE PHE ASP LEU LYS GLN LEU LEU SEQRES 14 D 184 TYR GLU LYS PHE GLY ASP ASP GLU GLU PHE LEU LEU LYS SEQRES 15 D 184 VAL ALA HET MN A1184 1 HET MN B1184 1 HET MN C1184 1 HET MN D1184 1 HETNAM MN MANGANESE (II) ION FORMUL 5 MN 4(MN 2+) FORMUL 6 HOH *465(H2 O) HELIX 1 1 TYR A 3 ALA A 16 1 14 HELIX 2 2 ASP A 18 ASN A 46 1 29 HELIX 3 3 PRO A 54 ARG A 63 1 10 HELIX 4 4 ASN A 99 SER A 121 1 23 HELIX 5 5 SER A 142 TYR A 149 1 8 HELIX 6 6 PHE A 158 GLY A 173 1 16 HELIX 7 7 ASP A 175 LEU A 180 1 6 HELIX 8 8 ASP B 2 ALA B 16 1 15 HELIX 9 9 ASP B 18 ASN B 46 1 29 HELIX 10 10 PRO B 54 ARG B 63 1 10 HELIX 11 11 ASN B 99 SER B 121 1 23 HELIX 12 12 SER B 142 TYR B 149 1 8 HELIX 13 13 PHE B 158 GLY B 173 1 16 HELIX 14 14 ASP B 175 LEU B 180 1 6 HELIX 15 15 ASP C 2 ALA C 16 1 15 HELIX 16 16 ASP C 18 LEU C 45 1 28 HELIX 17 17 PRO C 54 ARG C 63 1 10 HELIX 18 18 ASN C 99 SER C 121 1 23 HELIX 19 19 SER C 142 TYR C 149 1 8 HELIX 20 20 PHE C 158 GLY C 173 1 16 HELIX 21 21 ASP C 175 LEU C 180 1 6 HELIX 22 22 ASP D 2 ALA D 16 1 15 HELIX 23 23 ASP D 18 ASN D 46 1 29 HELIX 24 24 PRO D 54 ARG D 63 1 10 HELIX 25 25 ASN D 99 SER D 121 1 23 HELIX 26 26 SER D 142 TYR D 149 1 8 HELIX 27 27 PHE D 158 PHE D 172 1 15 HELIX 28 28 ASP D 175 LEU D 180 1 6 SHEET 1 AA 4 ASN A 80 ILE A 84 0 SHEET 2 AA 4 VAL A 87 VAL A 95 -1 O VAL A 87 N ILE A 84 SHEET 3 AA 4 ILE A 124 ILE A 131 1 O GLU A 125 N ILE A 90 SHEET 4 AA 4 LEU A 138 ILE A 140 -1 O HIS A 139 N ARG A 130 SHEET 1 BA 4 ASN B 80 ILE B 84 0 SHEET 2 BA 4 VAL B 87 VAL B 95 -1 O VAL B 87 N ILE B 84 SHEET 3 BA 4 ILE B 124 ILE B 131 1 O GLU B 125 N ILE B 90 SHEET 4 BA 4 LEU B 138 ILE B 140 -1 O HIS B 139 N ARG B 130 SHEET 1 CA 4 ASN C 80 ILE C 84 0 SHEET 2 CA 4 VAL C 87 VAL C 95 -1 O VAL C 87 N ILE C 84 SHEET 3 CA 4 ILE C 124 ILE C 131 1 O GLU C 125 N ILE C 90 SHEET 4 CA 4 LEU C 138 ILE C 140 -1 O HIS C 139 N ARG C 130 SHEET 1 DA 4 ASN D 80 ILE D 84 0 SHEET 2 DA 4 VAL D 87 VAL D 95 -1 O VAL D 87 N ILE D 84 SHEET 3 DA 4 ILE D 124 ILE D 131 1 O GLU D 125 N ILE D 90 SHEET 4 DA 4 LEU D 138 ILE D 140 -1 O HIS D 139 N ARG D 130 LINK MN MN A1184 OD1 ASP A 92 1555 1555 2.35 LINK MN MN A1184 O HOH A2110 1555 1555 2.34 LINK MN MN A1184 O HOH A2111 1555 1555 2.74 LINK MN MN A1184 NE2 HIS A 34 1555 1555 2.42 LINK MN MN A1184 OD2 ASP A 79 1555 1555 2.27 LINK MN MN A1184 O TYR A 93 1555 1555 2.31 LINK MN MN B1184 OD2 ASP B 79 1555 1555 2.22 LINK MN MN B1184 OD1 ASP B 92 1555 1555 2.38 LINK MN MN B1184 O TYR B 93 1555 1555 2.27 LINK MN MN B1184 O HOH B2130 1555 1555 2.48 LINK MN MN B1184 NE2 HIS B 34 1555 1555 2.44 LINK MN MN B1184 O HOH B2129 1555 1555 2.64 LINK MN MN C1184 NE2 HIS C 34 1555 1555 2.41 LINK MN MN C1184 OD1 ASP C 92 1555 1555 2.40 LINK MN MN C1184 O TYR C 93 1555 1555 2.16 LINK MN MN C1184 O HOH C2097 1555 1555 2.61 LINK MN MN C1184 O HOH C2098 1555 1555 2.32 LINK MN MN C1184 OD2 ASP C 79 1555 1555 2.21 LINK MN MN D1184 OD2 ASP D 79 1555 1555 2.18 LINK MN MN D1184 O TYR D 93 1555 1555 2.22 LINK MN MN D1184 O HOH D2125 1555 1555 2.29 LINK MN MN D1184 O HOH D2126 1555 1555 2.44 LINK MN MN D1184 OD1 ASP D 92 1555 1555 2.30 LINK MN MN D1184 NE2 HIS D 34 1555 1555 2.47 SITE 1 AC1 6 HIS A 34 ASP A 79 ASP A 92 TYR A 93 SITE 2 AC1 6 HOH A2110 HOH A2111 SITE 1 AC2 6 HIS B 34 ASP B 79 ASP B 92 TYR B 93 SITE 2 AC2 6 HOH B2129 HOH B2130 SITE 1 AC3 6 HIS C 34 ASP C 79 ASP C 92 TYR C 93 SITE 2 AC3 6 HOH C2097 HOH C2098 SITE 1 AC4 6 HIS D 34 ASP D 79 ASP D 92 TYR D 93 SITE 2 AC4 6 HOH D2125 HOH D2126 CRYST1 124.200 124.200 294.320 90.00 90.00 120.00 P 61 2 2 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008052 0.004649 0.000000 0.00000 SCALE2 0.000000 0.009297 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003398 0.00000