data_2XJH # _entry.id 2XJH # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.308 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2XJH PDBE EBI-44494 WWPDB D_1290044494 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 2XJI _pdbx_database_related.content_type unspecified _pdbx_database_related.details 'STRUCTURE AND COPPER-BINDING PROPERTIES OF METHANOBACTINS FROM METHYLOSINUS TRICHOSPORIUM OB3B' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2XJH _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2010-07-06 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'El-Ghazouani, A.' 1 'Basle, A.' 2 'Firbank, S.J.' 3 'Knapp, C.W.' 4 'Gray, J.' 5 'Graham, D.W.' 6 'Dennison, C.' 7 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Copper-Binding Properties and Structures of Methanobactins from Methylosinus Trichosporium Ob3B.' Inorg.Chem. 50 1378 ? 2011 INOCAJ US 0020-1669 0009 ? 21254756 10.1021/IC101965J 1 'Methanobactin, a Copper-Acquisition Compound from Methane-Oxidizing Bacteria.' Science 305 1612 ? 2004 SCIEAS US 0036-8075 0038 ? 15361623 10.1126/SCIENCE.1098322 2 'NMR, Mass Spectrometry and Chemical Evidence Reveal a Different Chemical Structure for Methanobactin that Contains Oxazolone Rings.' J.Am.Chem.Soc. 130 12604 ? 2008 JACSAT US 0002-7863 0004 ? 18729522 10.1021/JA804747D # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'El Ghazouani, A.' 1 ? primary 'Basle, A.' 2 ? primary 'Firbank, S.J.' 3 ? primary 'Knapp, C.W.' 4 ? primary 'Gray, J.' 5 ? primary 'Graham, D.W.' 6 ? primary 'Dennison, C.' 7 ? 1 'Kim, H.J.' 8 ? 1 'Graham, D.W.' 9 ? 1 'Dispirito, A.A.' 10 ? 1 'Alterman, M.A.' 11 ? 1 'Galeva, N.' 12 ? 1 'Larive, C.K.' 13 ? 1 'Asunskis, D.' 14 ? 1 'Sherwood, P.M.A.' 15 ? 2 'Behling, L.A.' 16 ? 2 'Hartsel, S.C.' 17 ? 2 'Lewis, D.E.' 18 ? 2 'Dispirito, A.A.' 19 ? 2 'Choi, D.W.' 20 ? 2 'Masterson, L.R.' 21 ? 2 'Veglia, G.' 22 ? 2 'Gallagher, W.H.' 23 ? # _cell.entry_id 2XJH _cell.length_a 29.475 _cell.length_b 29.475 _cell.length_c 29.480 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2XJH _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'METHANOBACTIN MB-OB3B' 1161.373 2 '1.11.1.-, 1.15.1.1' ? ? ? 2 non-polymer syn 'SODIUM ION' 22.990 3 ? ? ? ? 3 non-polymer syn 'COPPER (II) ION' 63.546 2 ? ? ? ? 4 water nat water 18.015 12 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'COPPER-BINDING COMPOUND, CBC, HYDROGEN PEROXIDE REDUCTASE, SUPEROXIDE DISMUTASE, MINUS-MET METHANOBACTIN' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(COI)(BB9)GSCYP(BB9)SCM' _entity_poly.pdbx_seq_one_letter_code_can XCGSCYPCSCM _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 COI n 1 2 BB9 n 1 3 GLY n 1 4 SER n 1 5 CYS n 1 6 TYR n 1 7 PRO n 1 8 BB9 n 1 9 SER n 1 10 CYS n 1 11 MET n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'METHYLOSINUS TRICHOSPORIUM' _entity_src_nat.pdbx_ncbi_taxonomy_id 595536 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain OB3B _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details 'NCIMB 11131' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code MBCTN_METTR _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession E3YBA4 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2XJH A 1 ? 11 ? E3YBA4 20 ? 30 ? 0 10 2 1 2XJH B 1 ? 11 ? E3YBA4 20 ? 30 ? 0 10 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight BB9 'peptide linking' n '(2Z)-2-amino-3-sulfanylprop-2-enoic acid' ? 'C3 H5 N O2 S' 119.142 COI non-polymer . '2-OXO-4-METHYLPENTANOIC ACID' 'alpha-ketoisocaproic acid' 'C6 H10 O3' 130.142 CU non-polymer . 'COPPER (II) ION' ? 'Cu 2' 63.546 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 # _exptl.entry_id 2XJH _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.41 _exptl_crystal.density_percent_sol 13 _exptl_crystal.description 'PREVIOUSLY SOLVED MODEL CCDC BIDLOQ WAS MANUALLY FITTED INTO DENSITY' _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '4M SODIUM FORMATE, pH 7.5' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC CCD' _diffrn_detector.pdbx_collection_date 2009-08-01 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.91 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'DIAMOND BEAMLINE I04' _diffrn_source.pdbx_synchrotron_site Diamond _diffrn_source.pdbx_synchrotron_beamline I04 _diffrn_source.pdbx_wavelength 0.91 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2XJH _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 20.84 _reflns.d_resolution_high 0.92 _reflns.number_obs 9025 _reflns.number_all ? _reflns.percent_possible_obs 95.7 _reflns.pdbx_Rmerge_I_obs 0.06 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 25.10 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 11.3 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 0.92 _reflns_shell.d_res_low 0.97 _reflns_shell.percent_possible_all 78.8 _reflns_shell.Rmerge_I_obs 0.34 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 5.50 _reflns_shell.pdbx_redundancy 5.5 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2XJH _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all 8586 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.00 _refine.ls_d_res_high 0.92 _refine.ls_percent_reflns_obs 95.7 _refine.ls_R_factor_obs 0.1245 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free 0.1405 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.00 _refine.ls_number_reflns_R_free 439 _refine.ls_number_parameters 1623 _refine.ls_number_restraints 1871 _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.details ? _refine.pdbx_starting_model NONE _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'ENGH AND HUBER' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details 'THIN SHELL' _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.entry_id 2XJH _refine_analyze.Luzzati_coordinate_error_obs ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues 13 _refine_analyze.occupancy_sum_hydrogen 92.00 _refine_analyze.occupancy_sum_non_hydrogen 165.46 # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 152 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 5 _refine_hist.number_atoms_solvent 12 _refine_hist.number_atoms_total 169 _refine_hist.d_res_high 0.92 _refine_hist.d_res_low 20.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function s_bond_d 0.020 ? ? ? 'X-RAY DIFFRACTION' ? s_angle_d 0.051 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_dist 0.000 ? ? ? 'X-RAY DIFFRACTION' ? s_from_restr_planes 0.0349 ? ? ? 'X-RAY DIFFRACTION' ? s_zero_chiral_vol 0.140 ? ? ? 'X-RAY DIFFRACTION' ? s_non_zero_chiral_vol 0.148 ? ? ? 'X-RAY DIFFRACTION' ? s_anti_bump_dis_restr 0.045 ? ? ? 'X-RAY DIFFRACTION' ? s_rigid_bond_adp_cmpnt 0.006 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_adp_cmpnt 0.052 ? ? ? 'X-RAY DIFFRACTION' ? s_approx_iso_adps 0.000 ? ? ? 'X-RAY DIFFRACTION' ? # _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.entry_id 2XJH _pdbx_refine.R_factor_all_no_cutoff ? _pdbx_refine.R_factor_obs_no_cutoff 0.1245 _pdbx_refine.free_R_factor_no_cutoff 0.1405 _pdbx_refine.free_R_error_no_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff 5.00 _pdbx_refine.free_R_val_test_set_ct_no_cutoff 439 _pdbx_refine.R_factor_all_4sig_cutoff ? _pdbx_refine.R_factor_obs_4sig_cutoff 0.1143 _pdbx_refine.free_R_factor_4sig_cutoff 0.1245 _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff 5.00 _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff 382 _pdbx_refine.number_reflns_obs_4sig_cutoff 7726 # _struct.entry_id 2XJH _struct.title 'Structure and Copper-binding Properties of Methanobactins from Methylosinus trichosporium OB3b' _struct.pdbx_descriptor 'METHANOBACTIN MB-OB3B (E.C.1.11.1.-, 1.15.1.1)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2XJH _struct_keywords.pdbx_keywords OXIDOREDUCTASE _struct_keywords.text 'OXIDOREDUCTASE, METAL TRANSPORT, METHANOTROPHS, OXAZALONE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 2 ? G N N 3 ? H N N 4 ? I N N 4 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 5 SG ? ? ? 1_555 A CYS 10 SG ? ? A CYS 4 A CYS 9 1_555 ? ? ? ? ? ? ? 2.033 ? disulf2 disulf ? ? B CYS 5 SG ? ? ? 1_555 B CYS 10 SG ? ? B CYS 4 B CYS 9 1_555 ? ? ? ? ? ? ? 2.049 ? metalc1 metalc ? ? A COI 1 O3 ? ? ? 1_555 C NA . NA ? ? A COI 0 A NA 1002 8_555 ? ? ? ? ? ? ? 2.291 ? covale1 covale both ? A COI 1 C1 ? ? ? 1_555 A BB9 2 N ? ? A COI 0 A BB9 1 1_555 ? ? ? ? ? ? ? 1.334 ? metalc2 metalc ? ? A COI 1 O2 ? ? ? 1_555 C NA . NA ? ? A COI 0 A NA 1002 8_555 ? ? ? ? ? ? ? 2.667 ? covale2 covale one ? A COI 1 O2 ? ? ? 1_555 A BB9 2 C ? ? A COI 0 A BB9 1 1_555 ? ? ? ? ? ? ? 1.410 ? metalc3 metalc ? ? A BB9 2 N ? ? ? 1_555 E CU . CU ? ? A BB9 1 A CU 1001 1_555 ? ? ? ? ? ? ? 2.030 ? metalc4 metalc ? ? A BB9 2 O ? ? ? 1_555 C NA . NA ? ? A BB9 1 A NA 1002 1_555 ? ? ? ? ? ? ? 2.383 ? covale3 covale one ? A BB9 2 CB ? ? ? 1_555 A GLY 3 N ? ? A BB9 1 A GLY 2 1_555 ? ? ? ? ? ? ? 1.399 ? metalc5 metalc ? ? A BB9 2 SG ? ? ? 1_555 E CU . CU ? ? A BB9 1 A CU 1001 1_555 ? ? ? ? ? ? ? 2.414 ? metalc6 metalc ? ? A BB9 8 N ? ? ? 1_555 E CU . CU ? ? A BB9 7 A CU 1001 1_555 ? ? ? ? ? ? ? 2.050 ? covale4 covale both ? A BB9 8 N ? ? ? 1_555 A PRO 7 C ? ? A BB9 7 A PRO 6 1_555 ? ? ? ? ? ? ? 1.309 ? covale5 covale one ? A BB9 8 CB ? ? ? 1_555 A SER 9 N ? ? A BB9 7 A SER 8 1_555 ? ? ? ? ? ? ? 1.346 ? metalc7 metalc ? ? A BB9 8 SG ? ? ? 1_555 E CU . CU ? ? A BB9 7 A CU 1001 1_555 ? ? ? ? ? ? ? 2.336 ? metalc8 metalc ? ? C NA . NA ? ? ? 1_555 I HOH . O ? ? A NA 1002 B HOH 2005 5_455 ? ? ? ? ? ? ? 2.366 ? metalc9 metalc ? ? C NA . NA ? ? ? 1_555 I HOH . O ? ? A NA 1002 B HOH 2005 3_455 ? ? ? ? ? ? ? 2.366 ? metalc10 metalc ? ? C NA . NA ? ? ? 1_555 B CYS 10 O ? ? A NA 1002 B CYS 9 5_455 ? ? ? ? ? ? ? 2.342 ? metalc11 metalc ? ? C NA . NA ? ? ? 1_555 I HOH . O ? ? A NA 1002 B HOH 2007 5_455 ? ? ? ? ? ? ? 2.457 ? metalc12 metalc ? ? D NA . NA ? ? ? 1_555 B MET 11 OXT ? ? A NA 1003 B MET 10 1_555 ? ? ? ? ? ? ? 2.297 ? metalc13 metalc ? ? D NA . NA ? ? ? 1_555 B SER 9 O ? ? A NA 1003 B SER 8 1_555 ? ? ? ? ? ? ? 2.255 ? metalc14 metalc ? ? D NA . NA ? ? ? 1_555 H HOH . O ? ? A NA 1003 A HOH 2003 5_445 ? ? ? ? ? ? ? 2.345 ? metalc15 metalc ? ? D NA . NA ? ? ? 1_555 A MET 11 O ? ? A NA 1003 A MET 10 1_555 ? ? ? ? ? ? ? 2.273 ? metalc16 metalc ? ? D NA . NA ? ? ? 1_555 A SER 9 O ? ? A NA 1003 A SER 8 1_555 ? ? ? ? ? ? ? 2.409 ? covale6 covale one ? B COI 1 O2 ? ? ? 1_555 B BB9 2 C ? ? B COI 0 B BB9 1 1_555 ? ? ? ? ? ? ? 1.380 ? covale7 covale both ? B COI 1 C1 ? ? ? 1_555 B BB9 2 N ? ? B COI 0 B BB9 1 1_555 ? ? ? ? ? ? ? 1.315 ? metalc17 metalc ? ? B BB9 2 SG ? ? ? 1_555 G CU . CU ? ? B BB9 1 B CU 1001 1_555 ? ? ? ? ? ? ? 2.388 ? covale8 covale one ? B BB9 2 CB ? ? ? 1_555 B GLY 3 N ? ? B BB9 1 B GLY 2 1_555 ? ? ? ? ? ? ? 1.351 ? metalc18 metalc ? ? B BB9 2 O ? ? ? 1_555 F NA . NA ? ? B BB9 1 B NA 1002 4_444 ? ? ? ? ? ? ? 2.246 ? metalc19 metalc ? ? B BB9 2 N ? ? ? 1_555 G CU . CU ? ? B BB9 1 B CU 1001 1_555 ? ? ? ? ? ? ? 1.992 ? metalc20 metalc ? ? B BB9 8 SG ? ? ? 1_555 G CU . CU ? ? B BB9 7 B CU 1001 1_555 ? ? ? ? ? ? ? 2.372 ? covale9 covale one ? B BB9 8 CB ? ? ? 1_555 B SER 9 N ? ? B BB9 7 B SER 8 1_555 ? ? ? ? ? ? ? 1.361 ? covale10 covale both ? B BB9 8 N ? ? ? 1_555 B PRO 7 C ? ? B BB9 7 B PRO 6 1_555 ? ? ? ? ? ? ? 1.335 ? metalc21 metalc ? ? B BB9 8 N ? ? ? 1_555 G CU . CU ? ? B BB9 7 B CU 1001 1_555 ? ? ? ? ? ? ? 2.044 ? metalc22 metalc ? ? F NA . NA ? ? ? 1_555 H HOH . O ? ? B NA 1002 A HOH 2001 7_455 ? ? ? ? ? ? ? 2.338 ? metalc23 metalc ? ? F NA . NA ? ? ? 1_555 I HOH . O ? ? B NA 1002 B HOH 2004 1_555 ? ? ? ? ? ? ? 2.779 ? metalc24 metalc ? ? F NA . NA ? ? ? 1_555 A BB9 8 O ? ? B NA 1002 A BB9 7 6_454 ? ? ? ? ? ? ? 2.314 ? metalc25 metalc ? ? F NA . NA ? ? ? 1_555 B BB9 2 O ? ? B NA 1002 B BB9 1 3_455 ? ? ? ? ? ? ? 2.246 ? metalc26 metalc ? ? F NA . NA ? ? ? 1_555 B TYR 6 O ? ? B NA 1002 B TYR 5 1_555 ? ? ? ? ? ? ? 2.453 ? metalc27 metalc ? ? F NA . NA ? ? ? 1_555 H HOH . O ? ? B NA 1002 A HOH 2004 6_454 ? ? ? ? ? ? ? 2.340 ? metalc28 metalc ? ? F NA . NA ? ? ? 6_554 A BB9 8 O ? ? B NA 1002 A BB9 7 1_555 ? ? ? ? ? ? ? 2.314 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? metalc ? ? covale ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 TYR 6 A . ? TYR 5 A PRO 7 A ? PRO 6 A 1 -2.45 2 TYR 6 B . ? TYR 5 B PRO 7 B ? PRO 6 B 1 -13.20 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE CU A 1001' AC2 Software ? ? ? ? 7 'BINDING SITE FOR RESIDUE NA A 1002' AC3 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE NA A 1003' AC4 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE CU B 1001' AC5 Software ? ? ? ? 7 'BINDING SITE FOR RESIDUE NA B 1002' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 COI A 1 ? COI A 0 . ? 1_555 ? 2 AC1 4 BB9 A 2 ? BB9 A 1 . ? 1_555 ? 3 AC1 4 PRO A 7 ? PRO A 6 . ? 1_555 ? 4 AC1 4 BB9 A 8 ? BB9 A 7 . ? 1_555 ? 5 AC2 7 COI A 1 ? COI A 0 . ? 8_555 ? 6 AC2 7 COI A 1 ? COI A 0 . ? 1_555 ? 7 AC2 7 BB9 A 2 ? BB9 A 1 . ? 1_555 ? 8 AC2 7 CYS B 10 ? CYS B 9 . ? 5_455 ? 9 AC2 7 HOH I . ? HOH B 2005 . ? 5_455 ? 10 AC2 7 HOH I . ? HOH B 2005 . ? 3_455 ? 11 AC2 7 HOH I . ? HOH B 2007 . ? 5_455 ? 12 AC3 5 SER A 9 ? SER A 8 . ? 1_555 ? 13 AC3 5 MET A 11 ? MET A 10 . ? 1_555 ? 14 AC3 5 HOH H . ? HOH A 2003 . ? 5_445 ? 15 AC3 5 SER B 9 ? SER B 8 . ? 1_555 ? 16 AC3 5 MET B 11 ? MET B 10 . ? 1_555 ? 17 AC4 4 COI B 1 ? COI B 0 . ? 1_555 ? 18 AC4 4 BB9 B 2 ? BB9 B 1 . ? 1_555 ? 19 AC4 4 PRO B 7 ? PRO B 6 . ? 1_555 ? 20 AC4 4 BB9 B 8 ? BB9 B 7 . ? 1_555 ? 21 AC5 7 BB9 A 8 ? BB9 A 7 . ? 6_454 ? 22 AC5 7 HOH H . ? HOH A 2001 . ? 7_455 ? 23 AC5 7 HOH H . ? HOH A 2004 . ? 6_454 ? 24 AC5 7 COI B 1 ? COI B 0 . ? 6_454 ? 25 AC5 7 BB9 B 2 ? BB9 B 1 . ? 3_455 ? 26 AC5 7 TYR B 6 ? TYR B 5 . ? 1_555 ? 27 AC5 7 HOH I . ? HOH B 2004 . ? 1_555 ? # _database_PDB_matrix.entry_id 2XJH _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2XJH _atom_sites.fract_transf_matrix[1][1] 0.033927 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.033927 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.033921 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CU N NA O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 COI 1 0 0 COI COI A . n A 1 2 BB9 2 1 1 BB9 BB9 A . n A 1 3 GLY 3 2 2 GLY GLY A . n A 1 4 SER 4 3 3 SER SER A . n A 1 5 CYS 5 4 4 CYS CYS A . n A 1 6 TYR 6 5 5 TYR TYR A . n A 1 7 PRO 7 6 6 PRO PRO A . n A 1 8 BB9 8 7 7 BB9 BB9 A . n A 1 9 SER 9 8 8 SER SER A . n A 1 10 CYS 10 9 9 CYS CYS A . n A 1 11 MET 11 10 10 MET MET A . n B 1 1 COI 1 0 0 COI COI B . n B 1 2 BB9 2 1 1 BB9 BB9 B . n B 1 3 GLY 3 2 2 GLY GLY B . n B 1 4 SER 4 3 3 SER SER B . n B 1 5 CYS 5 4 4 CYS CYS B . n B 1 6 TYR 6 5 5 TYR TYR B . n B 1 7 PRO 7 6 6 PRO PRO B . n B 1 8 BB9 8 7 7 BB9 BB9 B . n B 1 9 SER 9 8 8 SER SER B . n B 1 10 CYS 10 9 9 CYS CYS B . n B 1 11 MET 11 10 10 MET MET B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NA 1 1002 1002 NA NA A . D 2 NA 1 1003 1003 NA NA A . E 3 CU 1 1001 1001 CU CU A . F 2 NA 1 1002 1002 NA NA B . G 3 CU 1 1001 1001 CU CU B . H 4 HOH 1 2001 2001 HOH HOH A . H 4 HOH 2 2002 2002 HOH HOH A . H 4 HOH 3 2003 2003 HOH HOH A . H 4 HOH 4 2004 2004 HOH HOH A . H 4 HOH 5 2005 2005 HOH HOH A . I 4 HOH 1 2001 2001 HOH HOH B . I 4 HOH 2 2002 2002 HOH HOH B . I 4 HOH 3 2003 2003 HOH HOH B . I 4 HOH 4 2004 2004 HOH HOH B . I 4 HOH 5 2005 2005 HOH HOH B . I 4 HOH 6 2006 2006 HOH HOH B . I 4 HOH 7 2007 2007 HOH HOH B . # _pdbx_molecule_features.prd_id PRD_000762 _pdbx_molecule_features.name METHANOBACTIN _pdbx_molecule_features.type 'Chalkophore, Polypeptide' _pdbx_molecule_features.class 'Metal transport' _pdbx_molecule_features.details ? # loop_ _pdbx_molecule.instance_id _pdbx_molecule.prd_id _pdbx_molecule.asym_id 1 PRD_000762 A 2 PRD_000762 B # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A BB9 2 A BB9 1 ? CYS ? 2 A BB9 8 A BB9 7 ? CYS ? 3 B BB9 2 B BB9 1 ? CYS ? 4 B BB9 8 B BB9 7 ? CYS ? # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA monomeric 1 2 author_and_software_defined_assembly PISA monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,D,E,H 2 1 B,F,G,I # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 2005 ? H HOH . 2 1 B HOH 2005 ? I HOH . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O3 ? A COI 1 ? A COI 0 ? 1_555 NA ? C NA . ? A NA 1002 ? 8_555 O2 ? A COI 1 ? A COI 0 ? 1_555 65.5 ? 2 O3 ? A COI 1 ? A COI 0 ? 1_555 NA ? C NA . ? A NA 1002 ? 8_555 O ? A BB9 2 ? A BB9 1 ? 1_555 94.9 ? 3 O2 ? A COI 1 ? A COI 0 ? 1_555 NA ? C NA . ? A NA 1002 ? 8_555 O ? A BB9 2 ? A BB9 1 ? 1_555 29.6 ? 4 O3 ? A COI 1 ? A COI 0 ? 1_555 NA ? C NA . ? A NA 1002 ? 8_555 O ? I HOH . ? B HOH 2005 ? 5_455 147.9 ? 5 O2 ? A COI 1 ? A COI 0 ? 1_555 NA ? C NA . ? A NA 1002 ? 8_555 O ? I HOH . ? B HOH 2005 ? 5_455 91.0 ? 6 O ? A BB9 2 ? A BB9 1 ? 1_555 NA ? C NA . ? A NA 1002 ? 8_555 O ? I HOH . ? B HOH 2005 ? 5_455 65.7 ? 7 O3 ? A COI 1 ? A COI 0 ? 1_555 NA ? C NA . ? A NA 1002 ? 8_555 O ? I HOH . ? B HOH 2005 ? 3_455 147.9 ? 8 O2 ? A COI 1 ? A COI 0 ? 1_555 NA ? C NA . ? A NA 1002 ? 8_555 O ? I HOH . ? B HOH 2005 ? 3_455 91.0 ? 9 O ? A BB9 2 ? A BB9 1 ? 1_555 NA ? C NA . ? A NA 1002 ? 8_555 O ? I HOH . ? B HOH 2005 ? 3_455 65.7 ? 10 O ? I HOH . ? B HOH 2005 ? 5_455 NA ? C NA . ? A NA 1002 ? 8_555 O ? I HOH . ? B HOH 2005 ? 3_455 0.0 ? 11 O3 ? A COI 1 ? A COI 0 ? 1_555 NA ? C NA . ? A NA 1002 ? 8_555 O ? B CYS 10 ? B CYS 9 ? 5_455 122.9 ? 12 O2 ? A COI 1 ? A COI 0 ? 1_555 NA ? C NA . ? A NA 1002 ? 8_555 O ? B CYS 10 ? B CYS 9 ? 5_455 63.5 ? 13 O ? A BB9 2 ? A BB9 1 ? 1_555 NA ? C NA . ? A NA 1002 ? 8_555 O ? B CYS 10 ? B CYS 9 ? 5_455 41.0 ? 14 O ? I HOH . ? B HOH 2005 ? 5_455 NA ? C NA . ? A NA 1002 ? 8_555 O ? B CYS 10 ? B CYS 9 ? 5_455 27.8 ? 15 O ? I HOH . ? B HOH 2005 ? 3_455 NA ? C NA . ? A NA 1002 ? 8_555 O ? B CYS 10 ? B CYS 9 ? 5_455 27.8 ? 16 O3 ? A COI 1 ? A COI 0 ? 1_555 NA ? C NA . ? A NA 1002 ? 8_555 O ? I HOH . ? B HOH 2007 ? 5_455 155.5 ? 17 O2 ? A COI 1 ? A COI 0 ? 1_555 NA ? C NA . ? A NA 1002 ? 8_555 O ? I HOH . ? B HOH 2007 ? 5_455 90.0 ? 18 O ? A BB9 2 ? A BB9 1 ? 1_555 NA ? C NA . ? A NA 1002 ? 8_555 O ? I HOH . ? B HOH 2007 ? 5_455 60.6 ? 19 O ? I HOH . ? B HOH 2005 ? 5_455 NA ? C NA . ? A NA 1002 ? 8_555 O ? I HOH . ? B HOH 2007 ? 5_455 24.5 ? 20 O ? I HOH . ? B HOH 2005 ? 3_455 NA ? C NA . ? A NA 1002 ? 8_555 O ? I HOH . ? B HOH 2007 ? 5_455 24.5 ? 21 O ? B CYS 10 ? B CYS 9 ? 5_455 NA ? C NA . ? A NA 1002 ? 8_555 O ? I HOH . ? B HOH 2007 ? 5_455 38.1 ? 22 N ? A BB9 2 ? A BB9 1 ? 1_555 CU ? E CU . ? A CU 1001 ? 1_555 SG ? A BB9 2 ? A BB9 1 ? 1_555 85.5 ? 23 N ? A BB9 2 ? A BB9 1 ? 1_555 CU ? E CU . ? A CU 1001 ? 1_555 N ? A BB9 8 ? A BB9 7 ? 1_555 130.1 ? 24 SG ? A BB9 2 ? A BB9 1 ? 1_555 CU ? E CU . ? A CU 1001 ? 1_555 N ? A BB9 8 ? A BB9 7 ? 1_555 117.2 ? 25 N ? A BB9 2 ? A BB9 1 ? 1_555 CU ? E CU . ? A CU 1001 ? 1_555 SG ? A BB9 8 ? A BB9 7 ? 1_555 127.8 ? 26 SG ? A BB9 2 ? A BB9 1 ? 1_555 CU ? E CU . ? A CU 1001 ? 1_555 SG ? A BB9 8 ? A BB9 7 ? 1_555 108.4 ? 27 N ? A BB9 8 ? A BB9 7 ? 1_555 CU ? E CU . ? A CU 1001 ? 1_555 SG ? A BB9 8 ? A BB9 7 ? 1_555 88.7 ? 28 OXT ? B MET 11 ? B MET 10 ? 1_555 NA ? D NA . ? A NA 1003 ? 1_555 O ? B SER 9 ? B SER 8 ? 1_555 97.9 ? 29 OXT ? B MET 11 ? B MET 10 ? 1_555 NA ? D NA . ? A NA 1003 ? 1_555 O ? H HOH . ? A HOH 2003 ? 5_445 89.4 ? 30 O ? B SER 9 ? B SER 8 ? 1_555 NA ? D NA . ? A NA 1003 ? 1_555 O ? H HOH . ? A HOH 2003 ? 5_445 107.8 ? 31 OXT ? B MET 11 ? B MET 10 ? 1_555 NA ? D NA . ? A NA 1003 ? 1_555 O ? A MET 11 ? A MET 10 ? 1_555 163.4 ? 32 O ? B SER 9 ? B SER 8 ? 1_555 NA ? D NA . ? A NA 1003 ? 1_555 O ? A MET 11 ? A MET 10 ? 1_555 98.7 ? 33 O ? H HOH . ? A HOH 2003 ? 5_445 NA ? D NA . ? A NA 1003 ? 1_555 O ? A MET 11 ? A MET 10 ? 1_555 84.9 ? 34 OXT ? B MET 11 ? B MET 10 ? 1_555 NA ? D NA . ? A NA 1003 ? 1_555 O ? A SER 9 ? A SER 8 ? 1_555 87.1 ? 35 O ? B SER 9 ? B SER 8 ? 1_555 NA ? D NA . ? A NA 1003 ? 1_555 O ? A SER 9 ? A SER 8 ? 1_555 115.6 ? 36 O ? H HOH . ? A HOH 2003 ? 5_445 NA ? D NA . ? A NA 1003 ? 1_555 O ? A SER 9 ? A SER 8 ? 1_555 136.6 ? 37 O ? A MET 11 ? A MET 10 ? 1_555 NA ? D NA . ? A NA 1003 ? 1_555 O ? A SER 9 ? A SER 8 ? 1_555 86.4 ? 38 SG ? B BB9 2 ? B BB9 1 ? 1_555 CU ? G CU . ? B CU 1001 ? 1_555 N ? B BB9 2 ? B BB9 1 ? 1_555 85.6 ? 39 SG ? B BB9 2 ? B BB9 1 ? 1_555 CU ? G CU . ? B CU 1001 ? 1_555 SG ? B BB9 8 ? B BB9 7 ? 1_555 111.6 ? 40 N ? B BB9 2 ? B BB9 1 ? 1_555 CU ? G CU . ? B CU 1001 ? 1_555 SG ? B BB9 8 ? B BB9 7 ? 1_555 134.6 ? 41 SG ? B BB9 2 ? B BB9 1 ? 1_555 CU ? G CU . ? B CU 1001 ? 1_555 N ? B BB9 8 ? B BB9 7 ? 1_555 117.5 ? 42 N ? B BB9 2 ? B BB9 1 ? 1_555 CU ? G CU . ? B CU 1001 ? 1_555 N ? B BB9 8 ? B BB9 7 ? 1_555 123.5 ? 43 SG ? B BB9 8 ? B BB9 7 ? 1_555 CU ? G CU . ? B CU 1001 ? 1_555 N ? B BB9 8 ? B BB9 7 ? 1_555 86.6 ? 44 O ? B BB9 2 ? B BB9 1 ? 1_555 NA ? F NA . ? B NA 1002 ? 4_444 O ? H HOH . ? A HOH 2001 ? 7_455 47.2 ? 45 O ? B BB9 2 ? B BB9 1 ? 1_555 NA ? F NA . ? B NA 1002 ? 4_444 O ? I HOH . ? B HOH 2004 ? 1_555 39.4 ? 46 O ? H HOH . ? A HOH 2001 ? 7_455 NA ? F NA . ? B NA 1002 ? 4_444 O ? I HOH . ? B HOH 2004 ? 1_555 9.2 ? 47 O ? B BB9 2 ? B BB9 1 ? 1_555 NA ? F NA . ? B NA 1002 ? 4_444 O ? A BB9 8 ? A BB9 7 ? 6_454 51.4 ? 48 O ? H HOH . ? A HOH 2001 ? 7_455 NA ? F NA . ? B NA 1002 ? 4_444 O ? A BB9 8 ? A BB9 7 ? 6_454 17.7 ? 49 O ? I HOH . ? B HOH 2004 ? 1_555 NA ? F NA . ? B NA 1002 ? 4_444 O ? A BB9 8 ? A BB9 7 ? 6_454 24.2 ? 50 O ? B BB9 2 ? B BB9 1 ? 1_555 NA ? F NA . ? B NA 1002 ? 4_444 O ? B BB9 2 ? B BB9 1 ? 3_455 36.6 ? 51 O ? H HOH . ? A HOH 2001 ? 7_455 NA ? F NA . ? B NA 1002 ? 4_444 O ? B BB9 2 ? B BB9 1 ? 3_455 12.1 ? 52 O ? I HOH . ? B HOH 2004 ? 1_555 NA ? F NA . ? B NA 1002 ? 4_444 O ? B BB9 2 ? B BB9 1 ? 3_455 10.3 ? 53 O ? A BB9 8 ? A BB9 7 ? 6_454 NA ? F NA . ? B NA 1002 ? 4_444 O ? B BB9 2 ? B BB9 1 ? 3_455 17.6 ? 54 O ? B BB9 2 ? B BB9 1 ? 1_555 NA ? F NA . ? B NA 1002 ? 4_444 O ? B TYR 6 ? B TYR 5 ? 1_555 30.3 ? 55 O ? H HOH . ? A HOH 2001 ? 7_455 NA ? F NA . ? B NA 1002 ? 4_444 O ? B TYR 6 ? B TYR 5 ? 1_555 17.3 ? 56 O ? I HOH . ? B HOH 2004 ? 1_555 NA ? F NA . ? B NA 1002 ? 4_444 O ? B TYR 6 ? B TYR 5 ? 1_555 11.8 ? 57 O ? A BB9 8 ? A BB9 7 ? 6_454 NA ? F NA . ? B NA 1002 ? 4_444 O ? B TYR 6 ? B TYR 5 ? 1_555 23.6 ? 58 O ? B BB9 2 ? B BB9 1 ? 3_455 NA ? F NA . ? B NA 1002 ? 4_444 O ? B TYR 6 ? B TYR 5 ? 1_555 6.5 ? 59 O ? B BB9 2 ? B BB9 1 ? 1_555 NA ? F NA . ? B NA 1002 ? 4_444 O ? H HOH . ? A HOH 2004 ? 6_454 39.1 ? 60 O ? H HOH . ? A HOH 2001 ? 7_455 NA ? F NA . ? B NA 1002 ? 4_444 O ? H HOH . ? A HOH 2004 ? 6_454 23.0 ? 61 O ? I HOH . ? B HOH 2004 ? 1_555 NA ? F NA . ? B NA 1002 ? 4_444 O ? H HOH . ? A HOH 2004 ? 6_454 24.4 ? 62 O ? A BB9 8 ? A BB9 7 ? 6_454 NA ? F NA . ? B NA 1002 ? 4_444 O ? H HOH . ? A HOH 2004 ? 6_454 13.8 ? 63 O ? B BB9 2 ? B BB9 1 ? 3_455 NA ? F NA . ? B NA 1002 ? 4_444 O ? H HOH . ? A HOH 2004 ? 6_454 14.2 ? 64 O ? B TYR 6 ? B TYR 5 ? 1_555 NA ? F NA . ? B NA 1002 ? 4_444 O ? H HOH . ? A HOH 2004 ? 6_454 17.0 ? 65 O ? B BB9 2 ? B BB9 1 ? 1_555 NA ? F NA . ? B NA 1002 ? 4_444 O ? A BB9 8 ? A BB9 7 ? 1_555 40.8 ? 66 O ? H HOH . ? A HOH 2001 ? 7_455 NA ? F NA . ? B NA 1002 ? 4_444 O ? A BB9 8 ? A BB9 7 ? 1_555 87.6 ? 67 O ? I HOH . ? B HOH 2004 ? 1_555 NA ? F NA . ? B NA 1002 ? 4_444 O ? A BB9 8 ? A BB9 7 ? 1_555 80.2 ? 68 O ? A BB9 8 ? A BB9 7 ? 6_454 NA ? F NA . ? B NA 1002 ? 4_444 O ? A BB9 8 ? A BB9 7 ? 1_555 87.3 ? 69 O ? B BB9 2 ? B BB9 1 ? 3_455 NA ? F NA . ? B NA 1002 ? 4_444 O ? A BB9 8 ? A BB9 7 ? 1_555 76.1 ? 70 O ? B TYR 6 ? B TYR 5 ? 1_555 NA ? F NA . ? B NA 1002 ? 4_444 O ? A BB9 8 ? A BB9 7 ? 1_555 70.2 ? 71 O ? H HOH . ? A HOH 2004 ? 6_454 NA ? F NA . ? B NA 1002 ? 4_444 O ? A BB9 8 ? A BB9 7 ? 1_555 73.5 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-02-02 2 'Structure model' 1 1 2012-03-28 3 'Structure model' 1 2 2012-05-09 4 'Structure model' 1 3 2012-11-30 5 'Structure model' 1 4 2013-07-24 6 'Structure model' 2 0 2018-06-27 7 'Structure model' 2 1 2019-05-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Atomic model' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' 4 2 'Structure model' 'Non-polymer description' 5 2 'Structure model' Other 6 2 'Structure model' 'Refinement description' 7 2 'Structure model' 'Structure summary' 8 3 'Structure model' Other 9 4 'Structure model' Other 10 5 'Structure model' 'Non-polymer description' 11 5 'Structure model' 'Version format compliance' 12 6 'Structure model' 'Atomic model' 13 6 'Structure model' 'Data collection' 14 6 'Structure model' 'Derived calculations' 15 6 'Structure model' 'Refinement description' 16 6 'Structure model' 'Structure summary' 17 7 'Structure model' 'Data collection' 18 7 'Structure model' 'Derived calculations' 19 7 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 6 'Structure model' atom_site 2 6 'Structure model' atom_site_anisotrop 3 6 'Structure model' pdbx_molecule 4 6 'Structure model' pdbx_validate_rmsd_bond 5 6 'Structure model' software 6 6 'Structure model' struct_conn 7 7 'Structure model' refine 8 7 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 6 'Structure model' '_software.name' 2 7 'Structure model' '_refine.pdbx_ls_cross_valid_method' 3 7 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal _software.date _software.type _software.location _software.language SHELXL-97 refinement . ? 1 ? ? ? ? iMOSFLM 'data reduction' . ? 2 ? ? ? ? SCALA 'data scaling' . ? 3 ? ? ? ? SHELXDE phasing . ? 4 ? ? ? ? # _pdbx_entry_details.entry_id 2XJH _pdbx_entry_details.compound_details ;METHANOBACTIN IS A MEMBER OF THE FAMILY OF CHALKOPHORES, A COPPER CHELATING AGENT INVOLVED IN SCAVENGING, UPTAKE AND SUPPRESSION OF TOXICITY OF COPPER. GROUP: 1 NAME: METHANOBACTIN CHAIN: A, B COMPONENT_1: METHANOBACTIN PEPTIDE, RESIDUES 0 TO 10 COMPONENT_2: COPPER ATOM, RESIDUE 1001 DESCRIPTION: METHANOBACTIN IS A COPPER BINDING COMPOUND HAVING ANTIBIOTIC AND ANTIOXIDANT ACTIVITY ISOLATED FROM METHANOTROPHIC BACTERIA. METHANOBACTIN MAY FUNCTION IN COPPER UPTAKE, REGULATION OF METHANE MONOOXYGENASE EXPRESSION, PROTECTION AGAINST COPPER TOXICITY, AND PARTICULATE METHANE MONOOXYGENASE ACTIVITY. METHANOBACTIN CAN EXTRACT COPPER FROM INSOLUBLE MINERALS AND COULD BE IMPORTANT FOR MINERAL WEATHERING. MANY METHANOBACTIN PROPERTIES ARE REMINISCENT OF IRON SIDEROPHORES SUGGESTING A SIMILAR MECHANISM OF HANDLING. METHANOBACTIN-LIKE COMPOUNDS HAVE ALSO BEEN IDENTIFIED IN YEAST MITOCHONDRIA, SUGGEST THAT THESE MOLECULES ARE A MORE UNIVERSAL PHENOMENON. ; _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CB B TYR 5 ? ? CG B TYR 5 ? ? CD2 B TYR 5 ? ? 127.61 121.00 6.61 0.60 N 2 1 CG B TYR 5 ? ? CD1 B TYR 5 ? ? CE1 B TYR 5 ? ? 127.95 121.30 6.65 0.80 N # loop_ _pdbx_validate_polymer_linkage.id _pdbx_validate_polymer_linkage.PDB_model_num _pdbx_validate_polymer_linkage.auth_atom_id_1 _pdbx_validate_polymer_linkage.auth_asym_id_1 _pdbx_validate_polymer_linkage.auth_comp_id_1 _pdbx_validate_polymer_linkage.auth_seq_id_1 _pdbx_validate_polymer_linkage.PDB_ins_code_1 _pdbx_validate_polymer_linkage.label_alt_id_1 _pdbx_validate_polymer_linkage.auth_atom_id_2 _pdbx_validate_polymer_linkage.auth_asym_id_2 _pdbx_validate_polymer_linkage.auth_comp_id_2 _pdbx_validate_polymer_linkage.auth_seq_id_2 _pdbx_validate_polymer_linkage.PDB_ins_code_2 _pdbx_validate_polymer_linkage.label_alt_id_2 _pdbx_validate_polymer_linkage.dist 1 1 C A BB9 1 ? ? N A GLY 2 ? ? 2.89 2 1 C A BB9 7 ? ? N A SER 8 ? ? 2.88 3 1 C B BB9 1 ? ? N B GLY 2 ? ? 2.89 4 1 C B BB9 7 ? ? N B SER 8 ? ? 2.92 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SODIUM ION' NA 3 'COPPER (II) ION' CU 4 water HOH #