data_2XJI # _entry.id 2XJI # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.312 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2XJI PDBE EBI-44496 WWPDB D_1290044496 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 2XJH _pdbx_database_related.content_type unspecified _pdbx_database_related.details 'STRUCTURE AND COPPER-BINDING PROPERTIES OF METHANOBACTINS FROM METHYLOSINUS TRICHOSPORIUM OB3B' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2XJI _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2010-07-06 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'El-Ghazouani, A.' 1 'Basle, A.' 2 'Firbank, S.J.' 3 'Knapp, C.W.' 4 'Gray, J.' 5 'Graham, D.W.' 6 'Dennison, C.' 7 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Copper-Binding Properties and Structures of Methanobactins from Methylosinus Trichosporium Ob3B.' Inorg.Chem. 50 1378 ? 2011 INOCAJ US 0020-1669 0009 ? 21254756 10.1021/IC101965J 1 'Methanobactin, a Copper-Acquisition Compound from Methane-Oxidizing Bacteria.' Science 305 1612 ? 2004 SCIEAS US 0036-8075 0038 ? 15361623 10.1126/SCIENCE.1098322 2 'NMR, Mass Spectrometry and Chemical Evidence Reveal a Different Chemical Structure for Methanobactin that Contains Oxazolone Rings.' J.Am.Chem.Soc. 130 12604 ? 2008 JACSAT US 0002-7863 0004 ? 18729522 10.1021/JA804747D # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'El Ghazouani, A.' 1 ? primary 'Basle, A.' 2 ? primary 'Firbank, S.J.' 3 ? primary 'Knapp, C.W.' 4 ? primary 'Gray, J.' 5 ? primary 'Graham, D.W.' 6 ? primary 'Dennison, C.' 7 ? 1 'Kim, H.J.' 8 ? 1 'Graham, D.W.' 9 ? 1 'Dispirito, A.A.' 10 ? 1 'Alterman, M.A.' 11 ? 1 'Galeva, N.' 12 ? 1 'Larive, C.K.' 13 ? 1 'Asunskis, D.' 14 ? 1 'Sherwood, P.M.A.' 15 ? 2 'Behling, L.A.' 16 ? 2 'Hartsel, S.C.' 17 ? 2 'Lewis, D.E.' 18 ? 2 'Dispirito, A.A.' 19 ? 2 'Choi, D.W.' 20 ? 2 'Masterson, L.R.' 21 ? 2 'Veglia, G.' 22 ? 2 'Gallagher, W.H.' 23 ? # _cell.entry_id 2XJI _cell.length_a 31.710 _cell.length_b 39.570 _cell.length_c 85.050 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2XJI _symmetry.space_group_name_H-M 'I 2 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'METHANOBACTIN MB-OB3B' 1161.373 6 '1.11.1.-, 1.15.1.1' ? ? ? 2 non-polymer syn 'COPPER (II) ION' 63.546 6 ? ? ? ? 3 water nat water 18.015 68 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'COPPER-BINDING COMPOUND, CBC, HYDROGEN PEROXIDE REDUCTASE, SUPEROXIDE DISMUTASE, MINUS-MET METHANOBACTIN' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(COI)(BB9)GSCYP(BB9)SCM' _entity_poly.pdbx_seq_one_letter_code_can XCGSCYPCSCM _entity_poly.pdbx_strand_id A,B,C,D,E,F _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 COI n 1 2 BB9 n 1 3 GLY n 1 4 SER n 1 5 CYS n 1 6 TYR n 1 7 PRO n 1 8 BB9 n 1 9 SER n 1 10 CYS n 1 11 MET n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'METHYLOSINUS TRICHOSPORIUM' _entity_src_nat.pdbx_ncbi_taxonomy_id 595536 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain OB3B _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details 'NCIMB 11131' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code MBCTN_METTR _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession E3YBA4 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2XJI A 1 ? 11 ? E3YBA4 20 ? 30 ? 0 10 2 1 2XJI B 1 ? 11 ? E3YBA4 20 ? 30 ? 0 10 3 1 2XJI C 1 ? 11 ? E3YBA4 20 ? 30 ? 0 10 4 1 2XJI D 1 ? 11 ? E3YBA4 20 ? 30 ? 0 10 5 1 2XJI E 1 ? 11 ? E3YBA4 20 ? 30 ? 0 10 6 1 2XJI F 1 ? 11 ? E3YBA4 20 ? 30 ? 0 10 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight BB9 'peptide linking' n '(2Z)-2-amino-3-sulfanylprop-2-enoic acid' ? 'C3 H5 N O2 S' 119.142 COI non-polymer . '2-OXO-4-METHYLPENTANOIC ACID' 'alpha-ketoisocaproic acid' 'C6 H10 O3' 130.142 CU non-polymer . 'COPPER (II) ION' ? 'Cu 2' 63.546 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 # _exptl.entry_id 2XJI _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.96 _exptl_crystal.density_percent_sol 37.15 _exptl_crystal.description 'PREVIOUSLY SOLVED MODEL CCDC BIDLOQ WAS MANUALLY FITTED INTO DENSITY' # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '2M AMMONIUM SULFATE, 5% ISOPROPANOL, pH 7.5' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC CCD' _diffrn_detector.pdbx_collection_date 2009-08-01 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.91 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'DIAMOND BEAMLINE I04' _diffrn_source.pdbx_synchrotron_site Diamond _diffrn_source.pdbx_synchrotron_beamline I04 _diffrn_source.pdbx_wavelength 0.91 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2XJI _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 21.14 _reflns.d_resolution_high 1.00 _reflns.number_obs 29329 _reflns.number_all ? _reflns.percent_possible_obs 99.8 _reflns.pdbx_Rmerge_I_obs 0.09 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 13.50 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 6.8 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.00 _reflns_shell.d_res_low 1.05 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 0.36 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 13.50 _reflns_shell.pdbx_redundancy 6.4 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2XJI _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all 27860 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.00 _refine.ls_d_res_high 1.00 _refine.ls_percent_reflns_obs 94.8 _refine.ls_R_factor_obs 0.1137 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free 0.1291 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5 _refine.ls_number_reflns_R_free 1469 _refine.ls_number_parameters 5724 _refine.ls_number_restraints 8640 _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.details ? _refine.pdbx_starting_model NONE _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'ENGH AND HUBER' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details 'THIN SHELL' _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.entry_id 2XJI _refine_analyze.Luzzati_coordinate_error_obs ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues 35 _refine_analyze.occupancy_sum_hydrogen 252.00 _refine_analyze.occupancy_sum_non_hydrogen 471.00 # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 408 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 6 _refine_hist.number_atoms_solvent 68 _refine_hist.number_atoms_total 482 _refine_hist.d_res_high 1.00 _refine_hist.d_res_low 20.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function s_bond_d 0.026 ? ? ? 'X-RAY DIFFRACTION' ? s_angle_d 0.062 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_dist 0.000 ? ? ? 'X-RAY DIFFRACTION' ? s_from_restr_planes 0.0239 ? ? ? 'X-RAY DIFFRACTION' ? s_zero_chiral_vol 0.104 ? ? ? 'X-RAY DIFFRACTION' ? s_non_zero_chiral_vol 0.071 ? ? ? 'X-RAY DIFFRACTION' ? s_anti_bump_dis_restr 0.037 ? ? ? 'X-RAY DIFFRACTION' ? s_rigid_bond_adp_cmpnt 0.005 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_adp_cmpnt 0.038 ? ? ? 'X-RAY DIFFRACTION' ? s_approx_iso_adps 0.000 ? ? ? 'X-RAY DIFFRACTION' ? # _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.entry_id 2XJI _pdbx_refine.R_factor_all_no_cutoff ? _pdbx_refine.R_factor_obs_no_cutoff 0.1137 _pdbx_refine.free_R_factor_no_cutoff 0.1291 _pdbx_refine.free_R_error_no_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff 5 _pdbx_refine.free_R_val_test_set_ct_no_cutoff 1469 _pdbx_refine.R_factor_all_4sig_cutoff ? _pdbx_refine.R_factor_obs_4sig_cutoff 0.1066 _pdbx_refine.free_R_factor_4sig_cutoff 0.1197 _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff 5 _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff 1305 _pdbx_refine.number_reflns_obs_4sig_cutoff 24631 # _struct.entry_id 2XJI _struct.title 'Structure and Copper-binding Properties of Methanobactins from Methylosinus trichosporium OB3b' _struct.pdbx_descriptor 'METHANOBACTIN MB-OB3B (E.C.1.11.1.-, 1.15.1.1)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2XJI _struct_keywords.pdbx_keywords OXIDOREDUCTASE _struct_keywords.text 'OXIDOREDUCTASE, METAL TRANSPORT, METHANOTROPHS, OXAZALONE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 1 ? F N N 1 ? G N N 2 ? H N N 2 ? I N N 2 ? J N N 2 ? K N N 2 ? L N N 2 ? M N N 3 ? N N N 3 ? O N N 3 ? P N N 3 ? Q N N 3 ? R N N 3 ? # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 5 SG ? ? ? 1_555 A CYS 10 SG ? ? A CYS 4 A CYS 9 1_555 ? ? ? ? ? ? ? 2.063 ? disulf2 disulf ? ? B CYS 5 SG ? ? ? 1_555 B CYS 10 SG ? ? B CYS 4 B CYS 9 1_555 ? ? ? ? ? ? ? 2.042 ? disulf3 disulf ? ? C CYS 5 SG A ? ? 1_555 C CYS 10 SG A ? C CYS 4 C CYS 9 1_555 ? ? ? ? ? ? ? 2.046 ? disulf4 disulf ? ? C CYS 5 SG B ? ? 1_555 C CYS 10 SG B ? C CYS 4 C CYS 9 1_555 ? ? ? ? ? ? ? 2.068 ? disulf5 disulf ? ? D CYS 5 SG A ? ? 1_555 D CYS 10 SG A ? D CYS 4 D CYS 9 1_555 ? ? ? ? ? ? ? 2.055 ? disulf6 disulf ? ? D CYS 5 SG B ? ? 1_555 D CYS 10 SG B ? D CYS 4 D CYS 9 1_555 ? ? ? ? ? ? ? 2.023 ? disulf7 disulf ? ? E CYS 5 SG ? ? ? 1_555 E CYS 10 SG ? ? E CYS 4 E CYS 9 1_555 ? ? ? ? ? ? ? 2.047 ? disulf8 disulf ? ? F CYS 5 SG ? ? ? 1_555 F CYS 10 SG ? ? F CYS 4 F CYS 9 1_555 ? ? ? ? ? ? ? 2.037 ? covale1 covale one ? A COI 1 O2 ? ? ? 1_555 A BB9 2 C ? ? A COI 0 A BB9 1 1_555 ? ? ? ? ? ? ? 1.395 ? covale2 covale both ? A COI 1 C1 ? ? ? 1_555 A BB9 2 N ? ? A COI 0 A BB9 1 1_555 ? ? ? ? ? ? ? 1.302 ? metalc1 metalc ? ? A BB9 2 SG ? ? ? 1_555 G CU . CU ? ? A BB9 1 A CU 11 1_555 ? ? ? ? ? ? ? 2.373 ? metalc2 metalc ? ? A BB9 2 N ? ? ? 1_555 G CU . CU ? ? A BB9 1 A CU 11 1_555 ? ? ? ? ? ? ? 1.978 ? covale3 covale one ? A BB9 2 CB ? ? ? 1_555 A GLY 3 N ? ? A BB9 1 A GLY 2 1_555 ? ? ? ? ? ? ? 1.338 ? covale4 covale one ? A BB9 8 CB ? ? ? 1_555 A SER 9 N ? ? A BB9 7 A SER 8 1_555 ? ? ? ? ? ? ? 1.349 ? metalc3 metalc ? ? A BB9 8 N ? ? ? 1_555 G CU . CU ? ? A BB9 7 A CU 11 1_555 ? ? ? ? ? ? ? 2.011 ? covale5 covale both ? A BB9 8 N ? ? ? 1_555 A PRO 7 C ? ? A BB9 7 A PRO 6 1_555 ? ? ? ? ? ? ? 1.349 ? metalc4 metalc ? ? A BB9 8 SG ? ? ? 1_555 G CU . CU ? ? A BB9 7 A CU 11 1_555 ? ? ? ? ? ? ? 2.315 ? covale6 covale one ? B COI 1 O2 ? ? ? 1_555 B BB9 2 C ? ? B COI 0 B BB9 1 1_555 ? ? ? ? ? ? ? 1.362 ? covale7 covale both ? B COI 1 C1 ? ? ? 1_555 B BB9 2 N ? ? B COI 0 B BB9 1 1_555 ? ? ? ? ? ? ? 1.308 ? metalc5 metalc ? ? B BB9 2 N ? ? ? 1_555 H CU . CU ? ? B BB9 1 B CU 11 1_555 ? ? ? ? ? ? ? 1.957 ? covale8 covale one ? B BB9 2 CB ? ? ? 1_555 B GLY 3 N ? ? B BB9 1 B GLY 2 1_555 ? ? ? ? ? ? ? 1.370 ? metalc6 metalc ? ? B BB9 2 SG ? ? ? 1_555 H CU . CU ? ? B BB9 1 B CU 11 1_555 ? ? ? ? ? ? ? 2.453 ? covale9 covale both ? B BB9 8 N ? ? ? 1_555 B PRO 7 C ? ? B BB9 7 B PRO 6 1_555 ? ? ? ? ? ? ? 1.315 ? metalc7 metalc ? ? B BB9 8 N ? ? ? 1_555 H CU . CU ? ? B BB9 7 B CU 11 1_555 ? ? ? ? ? ? ? 2.010 ? covale10 covale one ? B BB9 8 CB ? ? ? 1_555 B SER 9 N ? ? B BB9 7 B SER 8 1_555 ? ? ? ? ? ? ? 1.352 ? metalc8 metalc ? ? B BB9 8 SG ? ? ? 1_555 H CU . CU ? ? B BB9 7 B CU 11 1_555 ? ? ? ? ? ? ? 2.331 ? covale11 covale one ? C COI 1 O2 B ? ? 1_555 C BB9 2 C B ? C COI 0 C BB9 1 1_555 ? ? ? ? ? ? ? 1.386 ? covale12 covale both ? C COI 1 C1 B ? ? 1_555 C BB9 2 N B ? C COI 0 C BB9 1 1_555 ? ? ? ? ? ? ? 1.313 ? covale13 covale one ? C COI 1 O2 A ? ? 1_555 C BB9 2 C A ? C COI 0 C BB9 1 1_555 ? ? ? ? ? ? ? 1.390 ? covale14 covale both ? C COI 1 C1 A ? ? 1_555 C BB9 2 N A ? C COI 0 C BB9 1 1_555 ? ? ? ? ? ? ? 1.319 ? covale15 covale one ? C BB9 2 CB A ? ? 1_555 C GLY 3 N A ? C BB9 1 C GLY 2 1_555 ? ? ? ? ? ? ? 1.358 ? metalc9 metalc ? ? C BB9 2 SG A ? ? 1_555 I CU . CU A ? C BB9 1 C CU 11 1_555 ? ? ? ? ? ? ? 2.461 ? metalc10 metalc ? ? C BB9 2 N A ? ? 1_555 I CU . CU A ? C BB9 1 C CU 11 1_555 ? ? ? ? ? ? ? 2.033 ? covale16 covale one ? C BB9 2 CB B ? ? 1_555 C GLY 3 N B ? C BB9 1 C GLY 2 1_555 ? ? ? ? ? ? ? 1.296 ? metalc11 metalc ? ? C BB9 2 SG B ? ? 1_555 I CU . CU B ? C BB9 1 C CU 11 1_555 ? ? ? ? ? ? ? 2.404 ? metalc12 metalc ? ? C BB9 2 N B ? ? 1_555 I CU . CU B ? C BB9 1 C CU 11 1_555 ? ? ? ? ? ? ? 1.864 ? covale17 covale one ? C BB9 8 CB A ? ? 1_555 C SER 9 N A ? C BB9 7 C SER 8 1_555 ? ? ? ? ? ? ? 1.348 ? covale18 covale both ? C BB9 8 N A ? ? 1_555 C PRO 7 C A ? C BB9 7 C PRO 6 1_555 ? ? ? ? ? ? ? 1.333 ? metalc13 metalc ? ? C BB9 8 SG B ? ? 1_555 I CU . CU B ? C BB9 7 C CU 11 1_555 ? ? ? ? ? ? ? 2.393 ? metalc14 metalc ? ? C BB9 8 N B ? ? 1_555 I CU . CU B ? C BB9 7 C CU 11 1_555 ? ? ? ? ? ? ? 2.071 ? covale19 covale both ? C BB9 8 N B ? ? 1_555 C PRO 7 C B ? C BB9 7 C PRO 6 1_555 ? ? ? ? ? ? ? 1.331 ? covale20 covale one ? C BB9 8 CB B ? ? 1_555 C SER 9 N B ? C BB9 7 C SER 8 1_555 ? ? ? ? ? ? ? 1.348 ? metalc15 metalc ? ? C BB9 8 SG A ? ? 1_555 I CU . CU A ? C BB9 7 C CU 11 1_555 ? ? ? ? ? ? ? 2.276 ? metalc16 metalc ? ? C BB9 8 N A ? ? 1_555 I CU . CU A ? C BB9 7 C CU 11 1_555 ? ? ? ? ? ? ? 2.014 ? covale21 covale both ? D COI 1 C1 A ? ? 1_555 D BB9 2 N A ? D COI 0 D BB9 1 1_555 ? ? ? ? ? ? ? 1.303 ? covale22 covale one ? D COI 1 O2 A ? ? 1_555 D BB9 2 C A ? D COI 0 D BB9 1 1_555 ? ? ? ? ? ? ? 1.401 ? covale23 covale both ? D COI 1 C1 B ? ? 1_555 D BB9 2 N B ? D COI 0 D BB9 1 1_555 ? ? ? ? ? ? ? 1.313 ? covale24 covale one ? D COI 1 O2 B ? ? 1_555 D BB9 2 C B ? D COI 0 D BB9 1 1_555 ? ? ? ? ? ? ? 1.367 ? metalc17 metalc ? ? D BB9 2 SG B ? ? 1_555 J CU . CU B ? D BB9 1 D CU 11 1_555 ? ? ? ? ? ? ? 2.443 ? metalc18 metalc ? ? D BB9 2 N B ? ? 1_555 J CU . CU B ? D BB9 1 D CU 11 1_555 ? ? ? ? ? ? ? 1.897 ? metalc19 metalc ? ? D BB9 2 N A ? ? 1_555 J CU . CU A ? D BB9 1 D CU 11 1_555 ? ? ? ? ? ? ? 1.937 ? covale25 covale one ? D BB9 2 CB A ? ? 1_555 D GLY 3 N A ? D BB9 1 D GLY 2 1_555 ? ? ? ? ? ? ? 1.347 ? metalc20 metalc ? ? D BB9 2 SG A ? ? 1_555 J CU . CU A ? D BB9 1 D CU 11 1_555 ? ? ? ? ? ? ? 2.419 ? covale26 covale one ? D BB9 2 CB B ? ? 1_555 D GLY 3 N B ? D BB9 1 D GLY 2 1_555 ? ? ? ? ? ? ? 1.417 ? covale27 covale one ? D BB9 8 CB A ? ? 1_555 D SER 9 N A ? D BB9 7 D SER 8 1_555 ? ? ? ? ? ? ? 1.332 ? covale28 covale both ? D BB9 8 N B ? ? 1_555 D PRO 7 C B ? D BB9 7 D PRO 6 1_555 ? ? ? ? ? ? ? 1.342 ? metalc21 metalc ? ? D BB9 8 SG B ? ? 1_555 J CU . CU B ? D BB9 7 D CU 11 1_555 ? ? ? ? ? ? ? 2.395 ? covale29 covale one ? D BB9 8 CB B ? ? 1_555 D SER 9 N B ? D BB9 7 D SER 8 1_555 ? ? ? ? ? ? ? 1.334 ? metalc22 metalc ? ? D BB9 8 N A ? ? 1_555 J CU . CU A ? D BB9 7 D CU 11 1_555 ? ? ? ? ? ? ? 2.026 ? covale30 covale both ? D BB9 8 N A ? ? 1_555 D PRO 7 C A ? D BB9 7 D PRO 6 1_555 ? ? ? ? ? ? ? 1.305 ? metalc23 metalc ? ? D BB9 8 SG A ? ? 1_555 J CU . CU A ? D BB9 7 D CU 11 1_555 ? ? ? ? ? ? ? 2.331 ? metalc24 metalc ? ? D BB9 8 N B ? ? 1_555 J CU . CU B ? D BB9 7 D CU 11 1_555 ? ? ? ? ? ? ? 1.951 ? covale31 covale both ? E COI 1 C1 ? ? ? 1_555 E BB9 2 N ? ? E COI 0 E BB9 1 1_555 ? ? ? ? ? ? ? 1.298 ? covale32 covale one ? E COI 1 O2 ? ? ? 1_555 E BB9 2 C ? ? E COI 0 E BB9 1 1_555 ? ? ? ? ? ? ? 1.386 ? covale33 covale one ? E BB9 2 CB ? ? ? 1_555 E GLY 3 N ? ? E BB9 1 E GLY 2 1_555 ? ? ? ? ? ? ? 1.348 ? metalc25 metalc ? ? E BB9 2 N ? ? ? 1_555 K CU . CU ? ? E BB9 1 E CU 11 1_555 ? ? ? ? ? ? ? 1.982 ? metalc26 metalc ? ? E BB9 2 SG ? ? ? 1_555 K CU . CU ? ? E BB9 1 E CU 11 1_555 ? ? ? ? ? ? ? 2.419 ? metalc27 metalc ? ? E BB9 8 N ? ? ? 1_555 K CU . CU ? ? E BB9 7 E CU 11 1_555 ? ? ? ? ? ? ? 2.034 ? covale34 covale one ? E BB9 8 CB ? ? ? 1_555 E SER 9 N ? ? E BB9 7 E SER 8 1_555 ? ? ? ? ? ? ? 1.343 ? covale35 covale both ? E BB9 8 N ? ? ? 1_555 E PRO 7 C ? ? E BB9 7 E PRO 6 1_555 ? ? ? ? ? ? ? 1.331 ? metalc28 metalc ? ? E BB9 8 SG ? ? ? 1_555 K CU . CU ? ? E BB9 7 E CU 11 1_555 ? ? ? ? ? ? ? 2.347 ? covale36 covale both ? F COI 1 C1 ? ? ? 1_555 F BB9 2 N ? ? F COI 0 F BB9 1 1_555 ? ? ? ? ? ? ? 1.306 ? covale37 covale one ? F COI 1 O2 ? ? ? 1_555 F BB9 2 C ? ? F COI 0 F BB9 1 1_555 ? ? ? ? ? ? ? 1.407 ? metalc29 metalc ? ? F BB9 2 SG ? ? ? 1_555 L CU . CU ? ? F BB9 1 F CU 11 1_555 ? ? ? ? ? ? ? 2.388 ? metalc30 metalc ? ? F BB9 2 N ? ? ? 1_555 L CU . CU ? ? F BB9 1 F CU 11 1_555 ? ? ? ? ? ? ? 1.968 ? covale38 covale one ? F BB9 2 CB ? ? ? 1_555 F GLY 3 N ? ? F BB9 1 F GLY 2 1_555 ? ? ? ? ? ? ? 1.333 ? covale39 covale one ? F BB9 8 CB ? ? ? 1_555 F SER 9 N ? ? F BB9 7 F SER 8 1_555 ? ? ? ? ? ? ? 1.332 ? covale40 covale both ? F BB9 8 N ? ? ? 1_555 F PRO 7 C ? ? F BB9 7 F PRO 6 1_555 ? ? ? ? ? ? ? 1.328 ? metalc31 metalc ? ? F BB9 8 N ? ? ? 1_555 L CU . CU ? ? F BB9 7 F CU 11 1_555 ? ? ? ? ? ? ? 2.047 ? metalc32 metalc ? ? F BB9 8 SG ? ? ? 1_555 L CU . CU ? ? F BB9 7 F CU 11 1_555 ? ? ? ? ? ? ? 2.325 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? metalc ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 TYR 6 A . ? TYR 5 A PRO 7 A ? PRO 6 A 1 -4.01 2 TYR 6 B . ? TYR 5 B PRO 7 B ? PRO 6 B 1 -13.88 3 TYR 6 B . ? TYR 5 B PRO 7 B ? PRO 6 B 1 -7.82 4 TYR 6 C . ? TYR 5 C PRO 7 C ? PRO 6 C 1 -6.42 5 TYR 6 C . ? TYR 5 C PRO 7 C ? PRO 6 C 1 -5.69 6 TYR 6 D . ? TYR 5 D PRO 7 D ? PRO 6 D 1 -4.77 7 TYR 6 D . ? TYR 5 D PRO 7 D ? PRO 6 D 1 -2.47 8 TYR 6 E . ? TYR 5 E PRO 7 E ? PRO 6 E 1 -8.60 9 TYR 6 F . ? TYR 5 F PRO 7 F ? PRO 6 F 1 -9.68 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE CU A 11' AC2 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE CU B 11' AC3 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE CU C 11' AC4 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE CU D 11' AC5 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE CU E 11' AC6 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE CU F 11' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 COI A 1 ? COI A 0 . ? 1_555 ? 2 AC1 4 BB9 A 2 ? BB9 A 1 . ? 1_555 ? 3 AC1 4 PRO A 7 ? PRO A 6 . ? 1_555 ? 4 AC1 4 BB9 A 8 ? BB9 A 7 . ? 1_555 ? 5 AC2 4 COI B 1 ? COI B 0 . ? 1_555 ? 6 AC2 4 BB9 B 2 ? BB9 B 1 . ? 1_555 ? 7 AC2 4 PRO B 7 ? PRO B 6 . ? 1_555 ? 8 AC2 4 BB9 B 8 ? BB9 B 7 . ? 1_555 ? 9 AC3 4 COI C 1 ? COI C 0 . ? 1_555 ? 10 AC3 4 BB9 C 2 ? BB9 C 1 . ? 1_555 ? 11 AC3 4 PRO C 7 ? PRO C 6 . ? 1_555 ? 12 AC3 4 BB9 C 8 ? BB9 C 7 . ? 1_555 ? 13 AC4 4 COI D 1 ? COI D 0 . ? 1_555 ? 14 AC4 4 BB9 D 2 ? BB9 D 1 . ? 1_555 ? 15 AC4 4 PRO D 7 ? PRO D 6 . ? 1_555 ? 16 AC4 4 BB9 D 8 ? BB9 D 7 . ? 1_555 ? 17 AC5 4 COI E 1 ? COI E 0 . ? 1_555 ? 18 AC5 4 BB9 E 2 ? BB9 E 1 . ? 1_555 ? 19 AC5 4 PRO E 7 ? PRO E 6 . ? 1_555 ? 20 AC5 4 BB9 E 8 ? BB9 E 7 . ? 1_555 ? 21 AC6 4 COI F 1 ? COI F 0 . ? 1_555 ? 22 AC6 4 BB9 F 2 ? BB9 F 1 . ? 1_555 ? 23 AC6 4 PRO F 7 ? PRO F 6 . ? 1_555 ? 24 AC6 4 BB9 F 8 ? BB9 F 7 . ? 1_555 ? # _database_PDB_matrix.entry_id 2XJI _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2XJI _atom_sites.fract_transf_matrix[1][1] 0.031536 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.025272 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011758 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CU N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 COI 1 0 0 COI COI A . n A 1 2 BB9 2 1 1 BB9 BB9 A . n A 1 3 GLY 3 2 2 GLY GLY A . n A 1 4 SER 4 3 3 SER SER A . n A 1 5 CYS 5 4 4 CYS CYS A . n A 1 6 TYR 6 5 5 TYR TYR A . n A 1 7 PRO 7 6 6 PRO PRO A . n A 1 8 BB9 8 7 7 BB9 BB9 A . n A 1 9 SER 9 8 8 SER SER A . n A 1 10 CYS 10 9 9 CYS CYS A . n A 1 11 MET 11 10 ? ? ? A 0 n B 1 1 COI 1 0 0 COI COI B . n B 1 2 BB9 2 1 1 BB9 BB9 B . n B 1 3 GLY 3 2 2 GLY GLY B . n B 1 4 SER 4 3 3 SER SER B . n B 1 5 CYS 5 4 4 CYS CYS B . n B 1 6 TYR 6 5 5 TYR TYR B . n B 1 7 PRO 7 6 6 PRO PRO B . n B 1 8 BB9 8 7 7 BB9 BB9 B . n B 1 9 SER 9 8 8 SER SER B . n B 1 10 CYS 10 9 9 CYS CYS B . n B 1 11 MET 11 10 ? ? ? B 0 n C 1 1 COI 1 0 0 COI COI C . n C 1 2 BB9 2 1 1 BB9 BB9 C . n C 1 3 GLY 3 2 2 GLY GLY C . n C 1 4 SER 4 3 3 SER SER C . n C 1 5 CYS 5 4 4 CYS CYS C . n C 1 6 TYR 6 5 5 TYR TYR C . n C 1 7 PRO 7 6 6 PRO PRO C . n C 1 8 BB9 8 7 7 BB9 BB9 C . n C 1 9 SER 9 8 8 SER SER C . n C 1 10 CYS 10 9 9 CYS CYS C . n C 1 11 MET 11 10 ? ? ? C 0 n D 1 1 COI 1 0 0 COI COI D . n D 1 2 BB9 2 1 1 BB9 BB9 D . n D 1 3 GLY 3 2 2 GLY GLY D . n D 1 4 SER 4 3 3 SER SER D . n D 1 5 CYS 5 4 4 CYS CYS D . n D 1 6 TYR 6 5 5 TYR TYR D . n D 1 7 PRO 7 6 6 PRO PRO D . n D 1 8 BB9 8 7 7 BB9 BB9 D . n D 1 9 SER 9 8 8 SER SER D . n D 1 10 CYS 10 9 9 CYS CYS D . n D 1 11 MET 11 10 ? ? ? D 0 n E 1 1 COI 1 0 0 COI COI E . n E 1 2 BB9 2 1 1 BB9 BB9 E . n E 1 3 GLY 3 2 2 GLY GLY E . n E 1 4 SER 4 3 3 SER SER E . n E 1 5 CYS 5 4 4 CYS CYS E . n E 1 6 TYR 6 5 5 TYR TYR E . n E 1 7 PRO 7 6 6 PRO PRO E . n E 1 8 BB9 8 7 7 BB9 BB9 E . n E 1 9 SER 9 8 8 SER SER E . n E 1 10 CYS 10 9 9 CYS CYS E . n E 1 11 MET 11 10 ? ? ? E 0 n F 1 1 COI 1 0 0 COI COI F . n F 1 2 BB9 2 1 1 BB9 BB9 F . n F 1 3 GLY 3 2 2 GLY GLY F . n F 1 4 SER 4 3 3 SER SER F . n F 1 5 CYS 5 4 4 CYS CYS F . n F 1 6 TYR 6 5 5 TYR TYR F . n F 1 7 PRO 7 6 6 PRO PRO F . n F 1 8 BB9 8 7 7 BB9 BB9 F . n F 1 9 SER 9 8 8 SER SER F . n F 1 10 CYS 10 9 9 CYS CYS F . n F 1 11 MET 11 10 ? ? ? F 0 n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 CU 1 11 11 CU CU A . H 2 CU 1 11 11 CU CU B . I 2 CU 1 11 11 CU CU C . J 2 CU 1 11 11 CU CU D . K 2 CU 1 11 11 CU CU E . L 2 CU 1 11 11 CU CU F . M 3 HOH 1 2001 2001 HOH HOH A . M 3 HOH 2 2002 2002 HOH HOH A . M 3 HOH 3 2003 2003 HOH HOH A . M 3 HOH 4 2005 2005 HOH HOH A . M 3 HOH 5 2006 2006 HOH HOH A . M 3 HOH 6 2007 2007 HOH HOH A . M 3 HOH 7 2008 2008 HOH HOH A . N 3 HOH 1 2001 2001 HOH HOH B . N 3 HOH 2 2002 2002 HOH HOH B . N 3 HOH 3 2003 2003 HOH HOH B . N 3 HOH 4 2004 2004 HOH HOH B . N 3 HOH 5 2005 2005 HOH HOH B . N 3 HOH 6 2006 2006 HOH HOH B . N 3 HOH 7 2007 2007 HOH HOH B . N 3 HOH 8 2008 2008 HOH HOH B . N 3 HOH 9 2009 2009 HOH HOH B . N 3 HOH 10 2010 2010 HOH HOH B . N 3 HOH 11 2011 2011 HOH HOH B . N 3 HOH 12 2012 2012 HOH HOH B . N 3 HOH 13 2013 2013 HOH HOH B . O 3 HOH 1 2001 2001 HOH HOH C . O 3 HOH 2 2002 2002 HOH HOH C . O 3 HOH 3 2003 2003 HOH HOH C . O 3 HOH 4 2004 2004 HOH HOH C . O 3 HOH 5 2005 2005 HOH HOH C . O 3 HOH 6 2006 2006 HOH HOH C . O 3 HOH 7 2007 2007 HOH HOH C . O 3 HOH 8 2008 2008 HOH HOH C . O 3 HOH 9 2009 2009 HOH HOH C . O 3 HOH 10 2010 2010 HOH HOH C . P 3 HOH 1 2001 2001 HOH HOH D . P 3 HOH 2 2002 2002 HOH HOH D . P 3 HOH 3 2003 2003 HOH HOH D . P 3 HOH 4 2004 2004 HOH HOH D . P 3 HOH 5 2005 2005 HOH HOH D . P 3 HOH 6 2006 2006 HOH HOH D . P 3 HOH 7 2007 2007 HOH HOH D . P 3 HOH 8 2008 2008 HOH HOH D . P 3 HOH 9 2009 2009 HOH HOH D . P 3 HOH 10 2010 2010 HOH HOH D . P 3 HOH 11 2011 2011 HOH HOH D . P 3 HOH 12 2012 2012 HOH HOH D . P 3 HOH 13 2013 2013 HOH HOH D . P 3 HOH 14 2014 2014 HOH HOH D . P 3 HOH 15 2015 2015 HOH HOH D . Q 3 HOH 1 2001 2001 HOH HOH E . Q 3 HOH 2 2002 2002 HOH HOH E . Q 3 HOH 3 2003 2003 HOH HOH E . Q 3 HOH 4 2004 2004 HOH HOH E . Q 3 HOH 5 2005 2005 HOH HOH E . Q 3 HOH 6 2006 2006 HOH HOH E . Q 3 HOH 7 2007 2007 HOH HOH E . Q 3 HOH 8 2008 2008 HOH HOH E . R 3 HOH 1 2001 2001 HOH HOH F . R 3 HOH 2 2002 2002 HOH HOH F . R 3 HOH 3 2003 2003 HOH HOH F . R 3 HOH 4 2004 2004 HOH HOH F . R 3 HOH 5 2005 2005 HOH HOH F . R 3 HOH 6 2006 2006 HOH HOH F . R 3 HOH 7 2007 2007 HOH HOH F . R 3 HOH 8 2008 2008 HOH HOH F . R 3 HOH 9 2009 2009 HOH HOH F . R 3 HOH 10 2010 2010 HOH HOH F . R 3 HOH 11 2011 2011 HOH HOH F . R 3 HOH 12 2012 2012 HOH HOH F . R 3 HOH 13 2013 2013 HOH HOH F . R 3 HOH 14 2014 2014 HOH HOH F . R 3 HOH 15 2015 2015 HOH HOH F . # _pdbx_molecule_features.prd_id PRD_000762 _pdbx_molecule_features.name METHANOBACTIN _pdbx_molecule_features.type 'Chalkophore, Polypeptide' _pdbx_molecule_features.class 'Metal transport' _pdbx_molecule_features.details ? # loop_ _pdbx_molecule.instance_id _pdbx_molecule.prd_id _pdbx_molecule.asym_id 1 PRD_000762 A 1 PRD_000762 G 2 PRD_000762 B 2 PRD_000762 H 3 PRD_000762 C 3 PRD_000762 I 4 PRD_000762 D 4 PRD_000762 J 5 PRD_000762 E 5 PRD_000762 K 6 PRD_000762 F 6 PRD_000762 L # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A BB9 2 A BB9 1 ? CYS ? 2 A BB9 8 A BB9 7 ? CYS ? 3 B BB9 2 B BB9 1 ? CYS ? 4 B BB9 8 B BB9 7 ? CYS ? 5 C BB9 2 C BB9 1 ? CYS ? 6 C BB9 8 C BB9 7 ? CYS ? 7 D BB9 2 D BB9 1 ? CYS ? 8 D BB9 8 D BB9 7 ? CYS ? 9 E BB9 2 E BB9 1 ? CYS ? 10 E BB9 8 E BB9 7 ? CYS ? 11 F BB9 2 F BB9 1 ? CYS ? 12 F BB9 8 F BB9 7 ? CYS ? # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 author_defined_assembly ? monomeric 1 3 author_defined_assembly ? monomeric 1 4 author_defined_assembly ? monomeric 1 5 author_defined_assembly ? monomeric 1 6 author_defined_assembly ? monomeric 1 7 software_defined_assembly PISA dimeric 2 8 software_defined_assembly PISA dimeric 2 9 software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,G,M 2 1 B,H,N 3 1 C,I,O 4 1 D,J,P 5 1 E,K,Q 6 1 F,L,R 7 1 A,B,G,H,M,N 8 1 C,D,I,J,O,P 9 1 E,F,K,L,Q,R # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 7 'ABSA (A^2)' 610 ? 7 MORE -16.2 ? 7 'SSA (A^2)' 1580 ? 8 'ABSA (A^2)' 590 ? 8 MORE -16.1 ? 8 'SSA (A^2)' 1560 ? 9 'ABSA (A^2)' 740 ? 9 MORE -24.7 ? 9 'SSA (A^2)' 1430 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id B _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 2005 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id N _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? A BB9 2 ? A BB9 1 ? 1_555 CU ? G CU . ? A CU 11 ? 1_555 N ? A BB9 2 ? A BB9 1 ? 1_555 86.8 ? 2 SG ? A BB9 2 ? A BB9 1 ? 1_555 CU ? G CU . ? A CU 11 ? 1_555 N ? A BB9 8 ? A BB9 7 ? 1_555 115.1 ? 3 N ? A BB9 2 ? A BB9 1 ? 1_555 CU ? G CU . ? A CU 11 ? 1_555 N ? A BB9 8 ? A BB9 7 ? 1_555 128.6 ? 4 SG ? A BB9 2 ? A BB9 1 ? 1_555 CU ? G CU . ? A CU 11 ? 1_555 SG ? A BB9 8 ? A BB9 7 ? 1_555 110.5 ? 5 N ? A BB9 2 ? A BB9 1 ? 1_555 CU ? G CU . ? A CU 11 ? 1_555 SG ? A BB9 8 ? A BB9 7 ? 1_555 127.9 ? 6 N ? A BB9 8 ? A BB9 7 ? 1_555 CU ? G CU . ? A CU 11 ? 1_555 SG ? A BB9 8 ? A BB9 7 ? 1_555 89.0 ? 7 N ? B BB9 2 ? B BB9 1 ? 1_555 CU ? H CU . ? B CU 11 ? 1_555 SG ? B BB9 2 ? B BB9 1 ? 1_555 85.1 ? 8 N ? B BB9 2 ? B BB9 1 ? 1_555 CU ? H CU . ? B CU 11 ? 1_555 N ? B BB9 8 ? B BB9 7 ? 1_555 125.0 ? 9 SG ? B BB9 2 ? B BB9 1 ? 1_555 CU ? H CU . ? B CU 11 ? 1_555 N ? B BB9 8 ? B BB9 7 ? 1_555 113.2 ? 10 N ? B BB9 2 ? B BB9 1 ? 1_555 CU ? H CU . ? B CU 11 ? 1_555 SG ? B BB9 8 ? B BB9 7 ? 1_555 139.0 ? 11 SG ? B BB9 2 ? B BB9 1 ? 1_555 CU ? H CU . ? B CU 11 ? 1_555 SG ? B BB9 8 ? B BB9 7 ? 1_555 104.8 ? 12 N ? B BB9 8 ? B BB9 7 ? 1_555 CU ? H CU . ? B CU 11 ? 1_555 SG ? B BB9 8 ? B BB9 7 ? 1_555 88.1 ? 13 SG A C BB9 2 ? C BB9 1 ? 1_555 CU A I CU . ? C CU 11 ? 1_555 N A C BB9 2 ? C BB9 1 ? 1_555 82.5 ? 14 SG A C BB9 2 ? C BB9 1 ? 1_555 CU A I CU . ? C CU 11 ? 1_555 SG A C BB9 8 ? C BB9 7 ? 1_555 107.3 ? 15 N A C BB9 2 ? C BB9 1 ? 1_555 CU A I CU . ? C CU 11 ? 1_555 SG A C BB9 8 ? C BB9 7 ? 1_555 137.9 ? 16 SG A C BB9 2 ? C BB9 1 ? 1_555 CU A I CU . ? C CU 11 ? 1_555 N A C BB9 8 ? C BB9 7 ? 1_555 113.8 ? 17 N A C BB9 2 ? C BB9 1 ? 1_555 CU A I CU . ? C CU 11 ? 1_555 N A C BB9 8 ? C BB9 7 ? 1_555 124.8 ? 18 SG A C BB9 8 ? C BB9 7 ? 1_555 CU A I CU . ? C CU 11 ? 1_555 N A C BB9 8 ? C BB9 7 ? 1_555 89.4 ? 19 SG B C BB9 2 ? C BB9 1 ? 1_555 CU B I CU . ? C CU 11 ? 1_555 N B C BB9 2 ? C BB9 1 ? 1_555 86.4 ? 20 SG B C BB9 2 ? C BB9 1 ? 1_555 CU B I CU . ? C CU 11 ? 1_555 SG B C BB9 8 ? C BB9 7 ? 1_555 102.9 ? 21 N B C BB9 2 ? C BB9 1 ? 1_555 CU B I CU . ? C CU 11 ? 1_555 SG B C BB9 8 ? C BB9 7 ? 1_555 133.3 ? 22 SG B C BB9 2 ? C BB9 1 ? 1_555 CU B I CU . ? C CU 11 ? 1_555 N B C BB9 8 ? C BB9 7 ? 1_555 119.0 ? 23 N B C BB9 2 ? C BB9 1 ? 1_555 CU B I CU . ? C CU 11 ? 1_555 N B C BB9 8 ? C BB9 7 ? 1_555 129.4 ? 24 SG B C BB9 8 ? C BB9 7 ? 1_555 CU B I CU . ? C CU 11 ? 1_555 N B C BB9 8 ? C BB9 7 ? 1_555 85.9 ? 25 SG B D BB9 2 ? D BB9 1 ? 1_555 CU B J CU . ? D CU 11 ? 1_555 N B D BB9 2 ? D BB9 1 ? 1_555 83.0 ? 26 SG B D BB9 2 ? D BB9 1 ? 1_555 CU B J CU . ? D CU 11 ? 1_555 SG B D BB9 8 ? D BB9 7 ? 1_555 103.7 ? 27 N B D BB9 2 ? D BB9 1 ? 1_555 CU B J CU . ? D CU 11 ? 1_555 SG B D BB9 8 ? D BB9 7 ? 1_555 124.7 ? 28 SG B D BB9 2 ? D BB9 1 ? 1_555 CU B J CU . ? D CU 11 ? 1_555 N B D BB9 8 ? D BB9 7 ? 1_555 114.0 ? 29 N B D BB9 2 ? D BB9 1 ? 1_555 CU B J CU . ? D CU 11 ? 1_555 N B D BB9 8 ? D BB9 7 ? 1_555 142.7 ? 30 SG B D BB9 8 ? D BB9 7 ? 1_555 CU B J CU . ? D CU 11 ? 1_555 N B D BB9 8 ? D BB9 7 ? 1_555 85.0 ? 31 N A D BB9 2 ? D BB9 1 ? 1_555 CU A J CU . ? D CU 11 ? 1_555 SG A D BB9 2 ? D BB9 1 ? 1_555 85.6 ? 32 N A D BB9 2 ? D BB9 1 ? 1_555 CU A J CU . ? D CU 11 ? 1_555 N A D BB9 8 ? D BB9 7 ? 1_555 130.1 ? 33 SG A D BB9 2 ? D BB9 1 ? 1_555 CU A J CU . ? D CU 11 ? 1_555 N A D BB9 8 ? D BB9 7 ? 1_555 114.7 ? 34 N A D BB9 2 ? D BB9 1 ? 1_555 CU A J CU . ? D CU 11 ? 1_555 SG A D BB9 8 ? D BB9 7 ? 1_555 131.7 ? 35 SG A D BB9 2 ? D BB9 1 ? 1_555 CU A J CU . ? D CU 11 ? 1_555 SG A D BB9 8 ? D BB9 7 ? 1_555 106.4 ? 36 N A D BB9 8 ? D BB9 7 ? 1_555 CU A J CU . ? D CU 11 ? 1_555 SG A D BB9 8 ? D BB9 7 ? 1_555 87.9 ? 37 N ? E BB9 2 ? E BB9 1 ? 1_555 CU ? K CU . ? E CU 11 ? 1_555 SG ? E BB9 2 ? E BB9 1 ? 1_555 86.2 ? 38 N ? E BB9 2 ? E BB9 1 ? 1_555 CU ? K CU . ? E CU 11 ? 1_555 N ? E BB9 8 ? E BB9 7 ? 1_555 125.1 ? 39 SG ? E BB9 2 ? E BB9 1 ? 1_555 CU ? K CU . ? E CU 11 ? 1_555 N ? E BB9 8 ? E BB9 7 ? 1_555 112.9 ? 40 N ? E BB9 2 ? E BB9 1 ? 1_555 CU ? K CU . ? E CU 11 ? 1_555 SG ? E BB9 8 ? E BB9 7 ? 1_555 137.5 ? 41 SG ? E BB9 2 ? E BB9 1 ? 1_555 CU ? K CU . ? E CU 11 ? 1_555 SG ? E BB9 8 ? E BB9 7 ? 1_555 105.3 ? 42 N ? E BB9 8 ? E BB9 7 ? 1_555 CU ? K CU . ? E CU 11 ? 1_555 SG ? E BB9 8 ? E BB9 7 ? 1_555 88.4 ? 43 SG ? F BB9 2 ? F BB9 1 ? 1_555 CU ? L CU . ? F CU 11 ? 1_555 N ? F BB9 2 ? F BB9 1 ? 1_555 86.1 ? 44 SG ? F BB9 2 ? F BB9 1 ? 1_555 CU ? L CU . ? F CU 11 ? 1_555 N ? F BB9 8 ? F BB9 7 ? 1_555 115.8 ? 45 N ? F BB9 2 ? F BB9 1 ? 1_555 CU ? L CU . ? F CU 11 ? 1_555 N ? F BB9 8 ? F BB9 7 ? 1_555 128.5 ? 46 SG ? F BB9 2 ? F BB9 1 ? 1_555 CU ? L CU . ? F CU 11 ? 1_555 SG ? F BB9 8 ? F BB9 7 ? 1_555 110.4 ? 47 N ? F BB9 2 ? F BB9 1 ? 1_555 CU ? L CU . ? F CU 11 ? 1_555 SG ? F BB9 8 ? F BB9 7 ? 1_555 129.1 ? 48 N ? F BB9 8 ? F BB9 7 ? 1_555 CU ? L CU . ? F CU 11 ? 1_555 SG ? F BB9 8 ? F BB9 7 ? 1_555 88.3 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-02-02 2 'Structure model' 1 1 2012-03-28 3 'Structure model' 1 2 2012-05-09 4 'Structure model' 1 3 2012-11-30 5 'Structure model' 1 4 2013-07-24 6 'Structure model' 2 0 2019-05-22 7 'Structure model' 2 1 2019-07-10 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Atomic model' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' 4 2 'Structure model' 'Non-polymer description' 5 2 'Structure model' Other 6 2 'Structure model' 'Refinement description' 7 2 'Structure model' 'Structure summary' 8 2 'Structure model' 'Version format compliance' 9 3 'Structure model' Other 10 4 'Structure model' Other 11 5 'Structure model' 'Non-polymer description' 12 6 'Structure model' Advisory 13 6 'Structure model' 'Atomic model' 14 6 'Structure model' 'Data collection' 15 6 'Structure model' 'Derived calculations' 16 6 'Structure model' Other 17 6 'Structure model' 'Refinement description' 18 7 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 6 'Structure model' atom_site 2 6 'Structure model' atom_site_anisotrop 3 6 'Structure model' diffrn_source 4 6 'Structure model' pdbx_database_proc 5 6 'Structure model' pdbx_database_status 6 6 'Structure model' pdbx_validate_polymer_linkage 7 6 'Structure model' pdbx_validate_rmsd_bond 8 6 'Structure model' refine 9 6 'Structure model' struct_conn 10 7 'Structure model' diffrn_source # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 6 'Structure model' '_diffrn_source.pdbx_synchrotron_site' 2 6 'Structure model' '_pdbx_database_status.recvd_author_approval' 3 6 'Structure model' '_refine.pdbx_ls_cross_valid_method' 4 7 'Structure model' '_diffrn_source.pdbx_synchrotron_site' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SHELXL-97 refinement . ? 1 iMOSFLM 'data reduction' . ? 2 SCALA 'data scaling' . ? 3 SHELX phasing . ? 4 # _pdbx_entry_details.entry_id 2XJI _pdbx_entry_details.compound_details ;METHANOBACTIN IS A MEMBER OF THE FAMILY OF CHALKOPHORES, A COPPER CHELATING AGENT INVOLVED IN SCAVENGING, UPTAKE AND SUPPRESSION OF TOXICITY OF COPPER. GROUP: 1 NAME: METHANOBACTIN CHAIN: A, B, C, D, E, F COMPONENT_1: METHANOBACTIN PEPTIDE, RESIDUES 0 TO 10 COMPONENT_2: COPPER ATOM, RESIDUE 1001 DESCRIPTION: METHANOBACTIN IS A COPPER BINDING COMPOUND HAVING ANTIBIOTIC AND ANTIOXIDANT ACTIVITY ISOLATED FROM METHANOTROPHIC BACTERIA. METHANOBACTIN MAY FUNCTION IN COPPER UPTAKE, REGULATION OF METHANE MONOOXYGENASE EXPRESSION, PROTECTION AGAINST COPPER TOXICITY, AND PARTICULATE METHANE MONOOXYGENASE ACTIVITY. METHANOBACTIN CAN EXTRACT COPPER FROM INSOLUBLE MINERALS AND COULD BE IMPORTANT FOR MINERAL WEATHERING. MANY METHANOBACTIN PROPERTIES ARE REMINISCENT OF IRON SIDEROPHORES SUGGESTING A SIMILAR MECHANISM OF HANDLING. METHANOBACTIN-LIKE COMPOUNDS HAVE ALSO BEEN IDENTIFIED IN YEAST MITOCHONDRIA, SUGGEST THAT THESE MOLECULES ARE A MORE UNIVERSAL PHENOMENON. ; _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 N B PRO 6 ? ? CA B PRO 6 ? ? 1.575 1.468 0.107 0.017 N 2 1 CA C GLY 2 ? B C C GLY 2 ? B 1.333 1.514 -0.181 0.016 N 3 1 C C GLY 2 ? B O C GLY 2 ? B 1.341 1.232 0.109 0.016 N 4 1 N C PRO 6 ? A CA C PRO 6 ? A 1.594 1.468 0.126 0.017 N 5 1 N C PRO 6 ? B CA C PRO 6 ? B 1.591 1.468 0.123 0.017 N 6 1 N D PRO 6 ? B CA D PRO 6 ? B 1.606 1.468 0.138 0.017 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 C A PRO 6 ? ? N A BB9 7 ? ? CA A BB9 7 ? ? 106.38 121.70 -15.32 2.50 Y 2 1 CB B TYR 5 ? B CG B TYR 5 ? B CD2 B TYR 5 ? B 126.93 121.00 5.93 0.60 N 3 1 CB B TYR 5 ? B CG B TYR 5 ? B CD1 B TYR 5 ? B 116.36 121.00 -4.64 0.60 N 4 1 N C GLY 2 ? B CA C GLY 2 ? B C C GLY 2 ? B 130.76 113.10 17.66 2.50 N 5 1 CB C TYR 5 ? A CG C TYR 5 ? A CD2 C TYR 5 ? A 125.10 121.00 4.10 0.60 N 6 1 CA C PRO 6 ? B N C PRO 6 ? B CD C PRO 6 ? B 120.45 111.50 8.95 1.40 N 7 1 N C PRO 6 ? B CA C PRO 6 ? B CB C PRO 6 ? B 95.11 102.60 -7.49 1.10 N 8 1 CA D PRO 6 ? B N D PRO 6 ? B CD D PRO 6 ? B 120.82 111.50 9.32 1.40 N 9 1 N D PRO 6 ? B CA D PRO 6 ? B CB D PRO 6 ? B 95.93 102.60 -6.67 1.10 N 10 1 N D PRO 6 ? B CD D PRO 6 ? B CG D PRO 6 ? B 95.56 103.80 -8.24 1.20 N 11 1 C E PRO 6 ? ? N E BB9 7 ? ? CA E BB9 7 ? ? 106.02 121.70 -15.68 2.50 Y # loop_ _pdbx_validate_polymer_linkage.id _pdbx_validate_polymer_linkage.PDB_model_num _pdbx_validate_polymer_linkage.auth_atom_id_1 _pdbx_validate_polymer_linkage.auth_asym_id_1 _pdbx_validate_polymer_linkage.auth_comp_id_1 _pdbx_validate_polymer_linkage.auth_seq_id_1 _pdbx_validate_polymer_linkage.PDB_ins_code_1 _pdbx_validate_polymer_linkage.label_alt_id_1 _pdbx_validate_polymer_linkage.auth_atom_id_2 _pdbx_validate_polymer_linkage.auth_asym_id_2 _pdbx_validate_polymer_linkage.auth_comp_id_2 _pdbx_validate_polymer_linkage.auth_seq_id_2 _pdbx_validate_polymer_linkage.PDB_ins_code_2 _pdbx_validate_polymer_linkage.label_alt_id_2 _pdbx_validate_polymer_linkage.dist 1 1 C A BB9 1 ? ? N A GLY 2 ? ? 2.90 2 1 C A BB9 7 ? ? N A SER 8 ? ? 2.92 3 1 C B BB9 1 ? ? N B GLY 2 ? ? 2.92 4 1 C B BB9 7 ? ? N B SER 8 ? ? 2.94 5 1 C C BB9 1 ? B N C GLY 2 ? B 2.91 6 1 C C BB9 1 ? A N C GLY 2 ? A 2.92 7 1 C C BB9 7 ? B N C SER 8 ? B 2.88 8 1 C D BB9 1 ? B N D GLY 2 ? B 2.80 9 1 C D BB9 1 ? A N D GLY 2 ? A 2.89 10 1 C D BB9 7 ? A N D SER 8 ? A 2.92 11 1 C E BB9 1 ? ? N E GLY 2 ? ? 2.89 12 1 C E BB9 7 ? ? N E SER 8 ? ? 2.87 13 1 C F BB9 1 ? ? N F GLY 2 ? ? 2.88 14 1 C F BB9 7 ? ? N F SER 8 ? ? 2.94 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 10 0 A MET 11 2 1 Y 1 B MET 10 0 B MET 11 3 1 Y 1 C MET 10 0 C MET 11 4 1 Y 1 D MET 10 0 D MET 11 5 1 Y 1 E MET 10 0 E MET 11 6 1 Y 1 F MET 10 0 F MET 11 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'COPPER (II) ION' CU 3 water HOH #