HEADER METAL BINDING PROTEIN 20-JUL-10 2XLG TITLE STRUCTURE AND METAL-LOADING OF A SOLUBLE PERIPLASM CUPRO-PROTEIN: CU- TITLE 2 CUCA-OPEN COMPND MOL_ID: 1; COMPND 2 MOLECULE: SLL1785 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 31-268; COMPND 5 SYNONYM: CUCA; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNECHOCYSTIS SP. PCC 6803; SOURCE 3 ORGANISM_TAXID: 1148; SOURCE 4 ATCC: 27184; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: B834(DE3); SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET29A KEYWDS METAL BINDING PROTEIN, CUPIN EXPDTA X-RAY DIFFRACTION AUTHOR K.J.WALDRON,S.J.FIRBANK,S.J.DAINTY,M.PEREZ-RAMA,S.TOTTEY,N.J.ROBINSON REVDAT 4 20-DEC-23 2XLG 1 LINK REVDAT 3 12-JUL-17 2XLG 1 REVDAT 2 18-MAY-11 2XLG 1 JRNL REVDAT 1 11-AUG-10 2XLG 0 JRNL AUTH K.J.WALDRON,S.J.FIRBANK,S.J.DAINTY,M.PEREZ-RAMA,S.TOTTEY, JRNL AUTH 2 N.J.ROBINSON JRNL TITL STRUCTURE AND METAL LOADING OF A SOLUBLE PERIPLASM JRNL TITL 2 CUPROPROTEIN. JRNL REF J.BIOL.CHEM. V. 285 32504 2010 JRNL REFN ISSN 0021-9258 JRNL PMID 20702411 JRNL DOI 10.1074/JBC.M110.153080 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0070 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 59.23 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 25190 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1344 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1893 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.75 REMARK 3 BIN R VALUE (WORKING SET) : 0.2460 REMARK 3 BIN FREE R VALUE SET COUNT : 79 REMARK 3 BIN FREE R VALUE : 0.2940 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1782 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 193 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.85000 REMARK 3 B22 (A**2) : 0.83000 REMARK 3 B33 (A**2) : 1.18000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.22000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.122 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.119 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.085 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.532 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1889 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1252 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2588 ; 1.276 ; 1.954 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3056 ; 0.844 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 241 ; 6.623 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 84 ;35.102 ;24.405 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 275 ;12.156 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;19.246 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 274 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2151 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 380 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1188 ; 0.527 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 469 ; 0.145 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1926 ; 0.873 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 701 ; 1.631 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 659 ; 2.499 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 35 A 174 REMARK 3 RESIDUE RANGE : A 211 A 268 REMARK 3 ORIGIN FOR THE GROUP (A): 15.2051 0.7834 9.9152 REMARK 3 T TENSOR REMARK 3 T11: 0.0962 T22: 0.0212 REMARK 3 T33: 0.0827 T12: 0.0133 REMARK 3 T13: 0.0329 T23: 0.0276 REMARK 3 L TENSOR REMARK 3 L11: 3.7505 L22: 1.0342 REMARK 3 L33: 1.9245 L12: 0.2754 REMARK 3 L13: 1.4282 L23: 0.1927 REMARK 3 S TENSOR REMARK 3 S11: -0.0425 S12: -0.1065 S13: 0.2259 REMARK 3 S21: 0.1144 S22: -0.1060 S23: -0.1587 REMARK 3 S31: 0.0593 S32: 0.0066 S33: 0.1485 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 175 A 210 REMARK 3 ORIGIN FOR THE GROUP (A): 15.3781 16.0482 7.7266 REMARK 3 T TENSOR REMARK 3 T11: 0.2224 T22: 0.0672 REMARK 3 T33: 0.4870 T12: 0.0062 REMARK 3 T13: -0.0188 T23: 0.0112 REMARK 3 L TENSOR REMARK 3 L11: 2.4423 L22: 1.2461 REMARK 3 L33: 1.5372 L12: 1.2088 REMARK 3 L13: 0.2384 L23: -0.6919 REMARK 3 S TENSOR REMARK 3 S11: -0.1623 S12: -0.0768 S13: 0.6932 REMARK 3 S21: 0.0894 S22: -0.0664 S23: 0.0147 REMARK 3 S31: -0.4665 S32: -0.0031 S33: 0.2287 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B REMARK 3 FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U REMARK 3 FACTORS. REMARK 4 REMARK 4 2XLG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-JUL-10. REMARK 100 THE DEPOSITION ID IS D_1290044696. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX10.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26653 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 46.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.19000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2XL9 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS PH 8.0, 20% PEG 8000 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 43.70650 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.91800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 43.70650 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 27.91800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -41.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 30 REMARK 465 ALA A 31 REMARK 465 GLU A 32 REMARK 465 THR A 33 REMARK 465 GLU A 34 REMARK 465 ASN A 203 REMARK 465 ALA A 204 REMARK 465 GLN A 205 REMARK 465 ARG A 206 REMARK 465 ALA A 207 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 45 CD CE NZ REMARK 470 ASP A 48 CG OD1 OD2 REMARK 470 LYS A 68 CD CE NZ REMARK 470 GLU A 118 CD OE1 OE2 REMARK 470 GLU A 169 CD OE1 OE2 REMARK 470 LEU A 195 CG CD1 CD2 REMARK 470 ASN A 196 CG OD1 ND2 REMARK 470 ASN A 197 CG OD1 ND2 REMARK 470 GLU A 200 CG CD OE1 OE2 REMARK 470 LYS A 234 CD CE NZ REMARK 470 LYS A 243 CD CE NZ REMARK 470 LYS A 263 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 47 -49.53 69.45 REMARK 500 ALA A 125 -48.89 117.72 REMARK 500 HIS A 146 -11.64 83.63 REMARK 500 ALA A 171 73.81 64.25 REMARK 500 ASN A 244 69.18 -151.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 593 DISTANCE = 6.10 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 301 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 88 NE2 REMARK 620 2 HIS A 90 NE2 98.3 REMARK 620 3 GLU A 95 OE1 169.0 92.7 REMARK 620 4 HIS A 149 NE2 91.5 103.0 86.4 REMARK 620 5 HOH A 425 O 87.7 131.2 84.6 125.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 302 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 488 O REMARK 620 2 HOH A 511 O 78.8 REMARK 620 3 HOH A 536 O 93.2 88.3 REMARK 620 4 HOH A 565 O 157.5 88.8 105.2 REMARK 620 5 HOH A 591 O 97.2 175.5 89.9 95.7 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 1269 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA C 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2XL7 RELATED DB: PDB REMARK 900 STRUCTURE AND METAL-LOADING OF A SOLUBLE PERIPLASM CUPRO- PROTEIN: REMARK 900 CU-CUCA-CLOSED ( SEMET) REMARK 900 RELATED ID: 2XL9 RELATED DB: PDB REMARK 900 STRUCTURE AND METAL-LOADING OF A SOLUBLE PERIPLASM CUPRO- PROTEIN: REMARK 900 ZN-CUCA-CLOSED ( SEMET) REMARK 900 RELATED ID: 2XLF RELATED DB: PDB REMARK 900 STRUCTURE AND METAL-LOADING OF A SOLUBLE PERIPLASM CUPRO- PROTEIN: REMARK 900 APO-CUCA-CLOSED ( SEMET) REMARK 900 RELATED ID: 2XLA RELATED DB: PDB REMARK 900 STRUCTURE AND METAL-LOADING OF A SOLUBLE PERIPLASM CUPRO- PROTEIN: REMARK 900 CU-CUCA-CLOSED DBREF 2XLG A 31 268 UNP P73600 P73600_SYNY3 31 268 SEQADV 2XLG MET A 30 UNP P73600 EXPRESSION TAG SEQRES 1 A 239 MET ALA GLU THR GLU ILE HIS THR PHE ASP ASP ILE PRO SEQRES 2 A 239 MET PRO LYS LEU ALA ASP PRO LEU LEU ILE TYR THR PRO SEQRES 3 A 239 ALA ASN GLU ILE PHE ASP ILE ALA SER CYS SER ALA LYS SEQRES 4 A 239 ASP ILE GLY PHE ALA ILE ALA HIS ALA GLN ILE PRO PRO SEQRES 5 A 239 GLY GLY GLY PRO MET PRO HIS ILE HIS TYR PHE ILE ASN SEQRES 6 A 239 GLU TRP PHE TRP THR PRO GLU GLY GLY ILE GLU LEU PHE SEQRES 7 A 239 HIS SER THR LYS GLN TYR PRO ASN MET ASP GLU LEU PRO SEQRES 8 A 239 VAL VAL GLY GLY ALA GLY ARG GLY ASP LEU TYR SER ILE SEQRES 9 A 239 GLN SER GLU PRO LYS GLN LEU ILE TYR SER PRO ASN HIS SEQRES 10 A 239 TYR MET HIS GLY PHE VAL ASN PRO THR ASP LYS THR LEU SEQRES 11 A 239 PRO ILE VAL PHE VAL TRP MET ARG ASN GLU VAL ALA PRO SEQRES 12 A 239 ASP PHE PRO TYR HIS ASP GLY GLY MET ARG GLU TYR PHE SEQRES 13 A 239 GLN ALA VAL GLY PRO ARG ILE THR ASP LEU ASN ASN LEU SEQRES 14 A 239 PRO GLU LEU THR ASN ALA GLN ARG ALA ALA PHE ALA SER SEQRES 15 A 239 GLU ALA PRO LYS TYR GLY ILE ASN GLN SER SER TYR PHE SEQRES 16 A 239 MET GLU TYR VAL ASN THR ILE SER ASP LYS LEU PRO ALA SEQRES 17 A 239 GLN ILE ALA LYS LEU LYS ASN ASP LYS ASP LEU GLU ARG SEQRES 18 A 239 MET VAL GLU VAL ILE GLU ALA PHE ASN ARG GLY ASP LYS SEQRES 19 A 239 SER VAL THR CYS SER HET CU A 301 1 HET NA A 302 1 HETNAM CU COPPER (II) ION HETNAM NA SODIUM ION FORMUL 2 CU CU 2+ FORMUL 3 NA NA 1+ FORMUL 4 HOH *193(H2 O) HELIX 1 1 GLY A 180 GLY A 189 1 10 HELIX 2 2 GLU A 212 TYR A 216 5 5 HELIX 3 3 PRO A 236 LYS A 241 1 6 HELIX 4 4 ASN A 244 GLY A 261 1 18 SHEET 1 AA 2 LEU A 50 TYR A 53 0 SHEET 2 AA 2 ILE A 59 ALA A 67 -1 O PHE A 60 N ILE A 52 SHEET 1 AB 6 LEU A 140 SER A 143 0 SHEET 2 AB 6 ILE A 93 TRP A 98 -1 O GLU A 95 N SER A 143 SHEET 3 AB 6 LEU A 159 ARG A 167 -1 O VAL A 162 N TRP A 98 SHEET 4 AB 6 ILE A 70 ILE A 79 -1 O GLY A 71 N ARG A 167 SHEET 5 AB 6 ILE A 59 ALA A 67 -1 O ILE A 59 N GLN A 78 SHEET 6 AB 6 THR A 266 CYS A 267 1 O THR A 266 N SER A 66 SHEET 1 AC 6 LEU A 140 SER A 143 0 SHEET 2 AC 6 ILE A 93 TRP A 98 -1 O GLU A 95 N SER A 143 SHEET 3 AC 6 LEU A 159 ARG A 167 -1 O VAL A 162 N TRP A 98 SHEET 4 AC 6 ILE A 70 ILE A 79 -1 O GLY A 71 N ARG A 167 SHEET 5 AC 6 ILE A 59 ALA A 67 -1 O ILE A 59 N GLN A 78 SHEET 6 AC 6 LEU A 50 TYR A 53 -1 O LEU A 50 N ILE A 62 SHEET 1 AD 2 THR A 266 CYS A 267 0 SHEET 2 AD 2 ILE A 59 ALA A 67 1 O SER A 66 N THR A 266 SHEET 1 AE 6 ILE A 218 GLN A 220 0 SHEET 2 AE 6 HIS A 88 HIS A 90 -1 O ILE A 89 N ASN A 219 SHEET 3 AE 6 TYR A 147 VAL A 152 -1 O TYR A 147 N HIS A 90 SHEET 4 AE 6 GLU A 105 GLN A 112 -1 O GLU A 105 N VAL A 152 SHEET 5 AE 6 GLY A 128 GLN A 134 -1 O TYR A 131 N HIS A 108 SHEET 6 AE 6 VAL A 228 SER A 232 1 N ASN A 229 O GLY A 128 SSBOND 1 CYS A 65 CYS A 267 1555 1555 2.02 LINK NE2 HIS A 88 CU CU A 301 1555 1555 2.05 LINK NE2 HIS A 90 CU CU A 301 1555 1555 2.11 LINK OE1 GLU A 95 CU CU A 301 1555 1555 2.06 LINK NE2 HIS A 149 CU CU A 301 1555 1555 2.14 LINK CU CU A 301 O HOH A 425 1555 1555 2.12 LINK NA NA A 302 O HOH A 488 1555 1555 2.36 LINK NA NA A 302 O HOH A 511 1555 1555 2.43 LINK NA NA A 302 O HOH A 536 1555 1555 2.44 LINK NA NA A 302 O HOH A 565 1555 4545 2.41 LINK NA NA A 302 O HOH A 591 1555 4545 2.28 SITE 1 AC1 5 HIS A 88 HIS A 90 GLU A 95 HIS A 149 SITE 2 AC1 5 HOH A 425 SITE 1 AC2 5 HOH A 591 HOH A 511 HOH A 536 HOH A 488 SITE 2 AC2 5 HOH A 565 CRYST1 87.413 55.836 63.034 90.00 110.07 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011440 0.000000 0.004180 0.00000 SCALE2 0.000000 0.017910 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016890 0.00000