data_2XLI # _entry.id 2XLI # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2XLI PDBE EBI-44699 WWPDB D_1290044699 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 2XLJ unspecified 'CRYSTAL STRUCTURE OF THE CSY4-CRRNA COMPLEX, HEXAGONAL FORM' PDB 2XLK unspecified 'CRYSTAL STRUCTURE OF THE CSY4-CRRNA COMPLEX, ORTHORHOMBIC FORM' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2XLI _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2010-07-20 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Haurwitz, R.E.' 1 'Jinek, M.' 2 'Wiedenheft, B.' 3 'Zhou, K.' 4 'Doudna, J.A.' 5 # _citation.id primary _citation.title 'Sequence- and Structure-Specific RNA Processing by a Crispr Endonuclease.' _citation.journal_abbrev Science _citation.journal_volume 329 _citation.page_first 1355 _citation.page_last ? _citation.year 2010 _citation.journal_id_ASTM SCIEAS _citation.country US _citation.journal_id_ISSN 0036-8075 _citation.journal_id_CSD 0038 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20829488 _citation.pdbx_database_id_DOI 10.1126/SCIENCE.1192272 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Haurwitz, R.E.' 1 primary 'Jinek, M.' 2 primary 'Wiedenheft, B.' 3 primary 'Zhou, K.' 4 primary 'Doudna, J.A.' 5 # _cell.entry_id 2XLI _cell.length_a 62.370 _cell.length_b 46.770 _cell.length_c 86.820 _cell.angle_alpha 90.00 _cell.angle_beta 108.62 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2XLI _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'CSY4 ENDORIBONUCLEASE' 21849.936 1 ? ? ? ? 2 polymer syn "5'-R(*CP*UP*GP*CP*CP*GP*UP*AP*UP*AP*GP*GP*CP*A*DG*C)-3'" 5097.095 1 ? ? ? '2-DEOXY MODIFICATION AT G20' 3 water nat water 18.015 33 ? ? ? ? # _entity_name_com.entity_id 2 _entity_name_com.name 'PA14 CRRNA HAIRPIN' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;GSFTMDHYLDIRLRPDPEFPPAQLMSVLFGKLHQALVAQGGDRIGVSFPDLDESRSRLGERLRIHASADDLRALLARPWL EGLRDHLQFGEPAVVPHPTPYRQVSRVQAKSNPERLRRRLMRRHDLSEEEARKRIPDTVARTLDLPFVTLRSQSTGQHFR LFIRHGPLQVTAEEGGFTCYGLSKGGFVPWF ; ;GSFTMDHYLDIRLRPDPEFPPAQLMSVLFGKLHQALVAQGGDRIGVSFPDLDESRSRLGERLRIHASADDLRALLARPWL EGLRDHLQFGEPAVVPHPTPYRQVSRVQAKSNPERLRRRLMRRHDLSEEEARKRIPDTVARTLDLPFVTLRSQSTGQHFR LFIRHGPLQVTAEEGGFTCYGLSKGGFVPWF ; A ? 2 polyribonucleotide no no 'CUGCCGUAUAGGCA(DG)C' CUGCCGUAUAGGCAGC B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 PHE n 1 4 THR n 1 5 MET n 1 6 ASP n 1 7 HIS n 1 8 TYR n 1 9 LEU n 1 10 ASP n 1 11 ILE n 1 12 ARG n 1 13 LEU n 1 14 ARG n 1 15 PRO n 1 16 ASP n 1 17 PRO n 1 18 GLU n 1 19 PHE n 1 20 PRO n 1 21 PRO n 1 22 ALA n 1 23 GLN n 1 24 LEU n 1 25 MET n 1 26 SER n 1 27 VAL n 1 28 LEU n 1 29 PHE n 1 30 GLY n 1 31 LYS n 1 32 LEU n 1 33 HIS n 1 34 GLN n 1 35 ALA n 1 36 LEU n 1 37 VAL n 1 38 ALA n 1 39 GLN n 1 40 GLY n 1 41 GLY n 1 42 ASP n 1 43 ARG n 1 44 ILE n 1 45 GLY n 1 46 VAL n 1 47 SER n 1 48 PHE n 1 49 PRO n 1 50 ASP n 1 51 LEU n 1 52 ASP n 1 53 GLU n 1 54 SER n 1 55 ARG n 1 56 SER n 1 57 ARG n 1 58 LEU n 1 59 GLY n 1 60 GLU n 1 61 ARG n 1 62 LEU n 1 63 ARG n 1 64 ILE n 1 65 HIS n 1 66 ALA n 1 67 SER n 1 68 ALA n 1 69 ASP n 1 70 ASP n 1 71 LEU n 1 72 ARG n 1 73 ALA n 1 74 LEU n 1 75 LEU n 1 76 ALA n 1 77 ARG n 1 78 PRO n 1 79 TRP n 1 80 LEU n 1 81 GLU n 1 82 GLY n 1 83 LEU n 1 84 ARG n 1 85 ASP n 1 86 HIS n 1 87 LEU n 1 88 GLN n 1 89 PHE n 1 90 GLY n 1 91 GLU n 1 92 PRO n 1 93 ALA n 1 94 VAL n 1 95 VAL n 1 96 PRO n 1 97 HIS n 1 98 PRO n 1 99 THR n 1 100 PRO n 1 101 TYR n 1 102 ARG n 1 103 GLN n 1 104 VAL n 1 105 SER n 1 106 ARG n 1 107 VAL n 1 108 GLN n 1 109 ALA n 1 110 LYS n 1 111 SER n 1 112 ASN n 1 113 PRO n 1 114 GLU n 1 115 ARG n 1 116 LEU n 1 117 ARG n 1 118 ARG n 1 119 ARG n 1 120 LEU n 1 121 MET n 1 122 ARG n 1 123 ARG n 1 124 HIS n 1 125 ASP n 1 126 LEU n 1 127 SER n 1 128 GLU n 1 129 GLU n 1 130 GLU n 1 131 ALA n 1 132 ARG n 1 133 LYS n 1 134 ARG n 1 135 ILE n 1 136 PRO n 1 137 ASP n 1 138 THR n 1 139 VAL n 1 140 ALA n 1 141 ARG n 1 142 THR n 1 143 LEU n 1 144 ASP n 1 145 LEU n 1 146 PRO n 1 147 PHE n 1 148 VAL n 1 149 THR n 1 150 LEU n 1 151 ARG n 1 152 SER n 1 153 GLN n 1 154 SER n 1 155 THR n 1 156 GLY n 1 157 GLN n 1 158 HIS n 1 159 PHE n 1 160 ARG n 1 161 LEU n 1 162 PHE n 1 163 ILE n 1 164 ARG n 1 165 HIS n 1 166 GLY n 1 167 PRO n 1 168 LEU n 1 169 GLN n 1 170 VAL n 1 171 THR n 1 172 ALA n 1 173 GLU n 1 174 GLU n 1 175 GLY n 1 176 GLY n 1 177 PHE n 1 178 THR n 1 179 CYS n 1 180 TYR n 1 181 GLY n 1 182 LEU n 1 183 SER n 1 184 LYS n 1 185 GLY n 1 186 GLY n 1 187 PHE n 1 188 VAL n 1 189 PRO n 1 190 TRP n 1 191 PHE n 2 1 C n 2 2 U n 2 3 G n 2 4 C n 2 5 C n 2 6 G n 2 7 U n 2 8 A n 2 9 U n 2 10 A n 2 11 G n 2 12 G n 2 13 C n 2 14 A n 2 15 DG n 2 16 C n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain UCBPP-PA14 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'PSEUDOMONAS AERUGINOSA' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 208963 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21 _entity_src_gen.pdbx_host_org_variant 'ROSETTA 2 (DE3)' _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PHMGWA _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'PSEUDOMONAS AERUGINOSA' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 208963 _pdbx_entity_src_syn.details ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 UNP A3KUJ4_PSEAE 1 ? ? A3KUJ4 ? 2 PDB 2XLI 2 ? ? 2XLI ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2XLI A 5 ? 191 ? A3KUJ4 1 ? 187 ? 1 187 2 2 2XLI B 1 ? 15 ? 2XLI 6 ? 20 ? 6 20 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2XLI GLY A 1 ? UNP A3KUJ4 ? ? 'expression tag' -3 1 1 2XLI SER A 2 ? UNP A3KUJ4 ? ? 'expression tag' -2 2 1 2XLI PHE A 3 ? UNP A3KUJ4 ? ? 'expression tag' -1 3 1 2XLI THR A 4 ? UNP A3KUJ4 ? ? 'expression tag' 0 4 1 2XLI VAL A 170 ? UNP A3KUJ4 ALA 166 conflict 166 5 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2XLI _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.27 _exptl_crystal.density_percent_sol 46 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.0 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '200 MM SODIUM CITRATE PH 5.0, 100 MM MAGNESIUM CHLORIDE, 20% (W/V) PEG 4000' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC CCD' _diffrn_detector.pdbx_collection_date 2009-08-23 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.11159 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 8.3.1' _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 8.3.1 _diffrn_source.pdbx_wavelength 1.11159 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2XLI _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 19.68 _reflns.d_resolution_high 2.33 _reflns.number_obs 9974 _reflns.number_all ? _reflns.percent_possible_obs 96.6 _reflns.pdbx_Rmerge_I_obs 0.06 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 18.90 _reflns.B_iso_Wilson_estimate 37.73 _reflns.pdbx_redundancy 4.4 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.33 _reflns_shell.d_res_low 2.50 _reflns_shell.percent_possible_all 98.3 _reflns_shell.Rmerge_I_obs 0.45 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.35 _reflns_shell.pdbx_redundancy 4.4 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2XLI _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 9973 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.99 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 19.681 _refine.ls_d_res_high 2.33 _refine.ls_percent_reflns_obs 96.83 _refine.ls_R_factor_obs 0.2198 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2184 _refine.ls_R_factor_R_free 0.2469 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 499 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 61.4 _refine.aniso_B[1][1] -5.9419 _refine.aniso_B[2][2] 5.8192 _refine.aniso_B[3][3] 0.1227 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] 6.9317 _refine.aniso_B[2][3] -0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.406 _refine.solvent_model_param_bsol 56.423 _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model NONE _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.37 _refine.pdbx_overall_phase_error 24.39 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1319 _refine_hist.pdbx_number_atoms_nucleic_acid 313 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 33 _refine_hist.number_atoms_total 1665 _refine_hist.d_res_high 2.33 _refine_hist.d_res_low 19.681 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.004 ? ? 1704 'X-RAY DIFFRACTION' ? f_angle_d 0.806 ? ? 2378 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 17.445 ? ? 674 'X-RAY DIFFRACTION' ? f_chiral_restr 0.049 ? ? 266 'X-RAY DIFFRACTION' ? f_plane_restr 0.002 ? ? 258 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all 'X-RAY DIFFRACTION' . 2.3300 2.5641 2387 0.2685 98.00 0.3228 . . 126 . . 'X-RAY DIFFRACTION' . 2.5641 2.9340 2374 0.2341 98.00 0.2414 . . 124 . . 'X-RAY DIFFRACTION' . 2.9340 3.6926 2356 0.1976 97.00 0.2546 . . 125 . . 'X-RAY DIFFRACTION' . 3.6926 19.6815 2357 0.2060 94.00 0.2265 . . 124 . . # _struct.entry_id 2XLI _struct.title 'Crystal structure of the Csy4-crRNA complex, monoclinic form' _struct.pdbx_descriptor 'CSY4 ENDORIBONUCLEASE' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2XLI _struct_keywords.pdbx_keywords HYDROLASE/RNA _struct_keywords.text 'HYDROLASE-RNA COMPLEX, ENDORIBONUCLEASE, CRISPR' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PRO A 20 ? GLY A 40 ? PRO A 16 GLY A 36 1 ? 21 HELX_P HELX_P2 2 SER A 67 ? ARG A 77 ? SER A 63 ARG A 73 1 ? 11 HELX_P HELX_P3 3 LEU A 83 ? ASP A 85 ? LEU A 79 ASP A 81 5 ? 3 HELX_P HELX_P4 4 PRO A 113 ? ARG A 123 ? PRO A 109 ARG A 119 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? B A 14 "O3'" ? ? ? 1_555 B DG 15 P ? ? B A 19 B DG 20 1_555 ? ? ? ? ? ? ? 1.608 ? covale2 covale ? ? B DG 15 "O3'" ? ? ? 1_555 B C 16 P ? ? B DG 20 B C 21 1_555 ? ? ? ? ? ? ? 1.604 ? hydrog1 hydrog ? ? B C 1 N3 ? ? ? 1_555 B DG 15 N1 ? ? B C 6 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog2 hydrog ? ? B C 1 N4 ? ? ? 1_555 B DG 15 O6 ? ? B C 6 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog3 hydrog ? ? B C 1 O2 ? ? ? 1_555 B DG 15 N2 ? ? B C 6 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog4 hydrog ? ? B U 2 N3 ? ? ? 1_555 B A 14 N1 ? ? B U 7 B A 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog5 hydrog ? ? B U 2 O4 ? ? ? 1_555 B A 14 N6 ? ? B U 7 B A 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog6 hydrog ? ? B G 3 N1 ? ? ? 1_555 B C 13 N3 ? ? B G 8 B C 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog7 hydrog ? ? B G 3 N2 ? ? ? 1_555 B C 13 O2 ? ? B G 8 B C 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog8 hydrog ? ? B G 3 O6 ? ? ? 1_555 B C 13 N4 ? ? B G 8 B C 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog9 hydrog ? ? B C 4 N3 ? ? ? 1_555 B G 12 N1 ? ? B C 9 B G 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog10 hydrog ? ? B C 4 N4 ? ? ? 1_555 B G 12 O6 ? ? B C 9 B G 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog11 hydrog ? ? B C 4 O2 ? ? ? 1_555 B G 12 N2 ? ? B C 9 B G 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog12 hydrog ? ? B C 5 N3 ? ? ? 1_555 B G 11 N1 ? ? B C 10 B G 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog13 hydrog ? ? B C 5 N4 ? ? ? 1_555 B G 11 O6 ? ? B C 10 B G 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog14 hydrog ? ? B C 5 O2 ? ? ? 1_555 B G 11 N2 ? ? B C 10 B G 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog15 hydrog ? ? B G 6 N2 ? ? ? 1_555 B A 10 N7 ? ? B G 11 B A 15 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? hydrog16 hydrog ? ? B G 6 N3 ? ? ? 1_555 B A 10 N6 ? ? B G 11 B A 15 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id HIS _struct_mon_prot_cis.label_seq_id 97 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id HIS _struct_mon_prot_cis.auth_seq_id 93 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 98 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 94 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 1.44 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 4 ? AB ? 4 ? AC ? 2 ? AD ? 2 ? AE ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? anti-parallel AA 3 4 ? anti-parallel AB 1 2 ? anti-parallel AB 2 3 ? anti-parallel AB 3 4 ? anti-parallel AC 1 2 ? anti-parallel AD 1 2 ? anti-parallel AE 1 2 ? anti-parallel AE 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 GLY A 45 ? SER A 47 ? GLY A 41 SER A 43 AA 2 ARG A 61 ? ALA A 66 ? ARG A 57 ALA A 62 AA 3 HIS A 7 ? LEU A 13 ? HIS A 3 LEU A 9 AA 4 LEU A 87 ? PHE A 89 ? LEU A 83 PHE A 85 AB 1 GLY A 45 ? SER A 47 ? GLY A 41 SER A 43 AB 2 ARG A 61 ? ALA A 66 ? ARG A 57 ALA A 62 AB 3 HIS A 7 ? LEU A 13 ? HIS A 3 LEU A 9 AB 4 ALA A 93 ? VAL A 94 ? ALA A 89 VAL A 90 AC 1 LEU A 87 ? PHE A 89 ? LEU A 83 PHE A 85 AC 2 HIS A 7 ? LEU A 13 ? HIS A 3 LEU A 9 AD 1 TYR A 101 ? ARG A 102 ? TYR A 97 ARG A 98 AD 2 VAL A 188 ? PRO A 189 ? VAL A 184 PRO A 185 AE 1 VAL A 104 ? ARG A 106 ? VAL A 100 ARG A 102 AE 2 HIS A 158 ? HIS A 165 ? HIS A 154 HIS A 161 AE 3 PHE A 147 ? ARG A 151 ? PHE A 143 ARG A 147 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N SER A 47 ? N SER A 43 O ARG A 63 ? O ARG A 59 AA 2 3 N ALA A 66 ? N ALA A 62 O HIS A 7 ? O HIS A 3 AA 3 4 N ARG A 12 ? N ARG A 8 O GLN A 88 ? O GLN A 84 AB 1 2 N SER A 47 ? N SER A 43 O ARG A 63 ? O ARG A 59 AB 2 3 N ALA A 66 ? N ALA A 62 O HIS A 7 ? O HIS A 3 AB 3 4 N TYR A 8 ? N TYR A 4 O ALA A 93 ? O ALA A 89 AC 1 2 N GLN A 88 ? N GLN A 84 O ARG A 12 ? O ARG A 8 AD 1 2 N ARG A 102 ? N ARG A 98 O VAL A 188 ? O VAL A 184 AE 1 2 N SER A 105 ? N SER A 101 O ARG A 164 ? O ARG A 160 AE 2 3 N LEU A 161 ? N LEU A 157 O VAL A 148 ? O VAL A 144 # _database_PDB_matrix.entry_id 2XLI _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2XLI _atom_sites.fract_transf_matrix[1][1] 0.016033 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.005402 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.021381 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012154 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -3 ? ? ? A . n A 1 2 SER 2 -2 ? ? ? A . n A 1 3 PHE 3 -1 -1 PHE PHE A . n A 1 4 THR 4 0 0 THR THR A . n A 1 5 MET 5 1 1 MET MET A . n A 1 6 ASP 6 2 2 ASP ASP A . n A 1 7 HIS 7 3 3 HIS HIS A . n A 1 8 TYR 8 4 4 TYR TYR A . n A 1 9 LEU 9 5 5 LEU LEU A . n A 1 10 ASP 10 6 6 ASP ASP A . n A 1 11 ILE 11 7 7 ILE ILE A . n A 1 12 ARG 12 8 8 ARG ARG A . n A 1 13 LEU 13 9 9 LEU LEU A . n A 1 14 ARG 14 10 10 ARG ARG A . n A 1 15 PRO 15 11 11 PRO PRO A . n A 1 16 ASP 16 12 12 ASP ASP A . n A 1 17 PRO 17 13 13 PRO PRO A . n A 1 18 GLU 18 14 14 GLU GLU A . n A 1 19 PHE 19 15 15 PHE PHE A . n A 1 20 PRO 20 16 16 PRO PRO A . n A 1 21 PRO 21 17 17 PRO PRO A . n A 1 22 ALA 22 18 18 ALA ALA A . n A 1 23 GLN 23 19 19 GLN GLN A . n A 1 24 LEU 24 20 20 LEU LEU A . n A 1 25 MET 25 21 21 MET MET A . n A 1 26 SER 26 22 22 SER SER A . n A 1 27 VAL 27 23 23 VAL VAL A . n A 1 28 LEU 28 24 24 LEU LEU A . n A 1 29 PHE 29 25 25 PHE PHE A . n A 1 30 GLY 30 26 26 GLY GLY A . n A 1 31 LYS 31 27 27 LYS LYS A . n A 1 32 LEU 32 28 28 LEU LEU A . n A 1 33 HIS 33 29 29 HIS HIS A . n A 1 34 GLN 34 30 30 GLN GLN A . n A 1 35 ALA 35 31 31 ALA ALA A . n A 1 36 LEU 36 32 32 LEU LEU A . n A 1 37 VAL 37 33 33 VAL VAL A . n A 1 38 ALA 38 34 34 ALA ALA A . n A 1 39 GLN 39 35 35 GLN GLN A . n A 1 40 GLY 40 36 36 GLY GLY A . n A 1 41 GLY 41 37 37 GLY GLY A . n A 1 42 ASP 42 38 38 ASP ASP A . n A 1 43 ARG 43 39 39 ARG ARG A . n A 1 44 ILE 44 40 40 ILE ILE A . n A 1 45 GLY 45 41 41 GLY GLY A . n A 1 46 VAL 46 42 42 VAL VAL A . n A 1 47 SER 47 43 43 SER SER A . n A 1 48 PHE 48 44 44 PHE PHE A . n A 1 49 PRO 49 45 45 PRO PRO A . n A 1 50 ASP 50 46 46 ASP ASP A . n A 1 51 LEU 51 47 47 LEU LEU A . n A 1 52 ASP 52 48 48 ASP ASP A . n A 1 53 GLU 53 49 49 GLU GLU A . n A 1 54 SER 54 50 50 SER SER A . n A 1 55 ARG 55 51 51 ARG ARG A . n A 1 56 SER 56 52 52 SER SER A . n A 1 57 ARG 57 53 53 ARG ARG A . n A 1 58 LEU 58 54 54 LEU LEU A . n A 1 59 GLY 59 55 55 GLY GLY A . n A 1 60 GLU 60 56 56 GLU GLU A . n A 1 61 ARG 61 57 57 ARG ARG A . n A 1 62 LEU 62 58 58 LEU LEU A . n A 1 63 ARG 63 59 59 ARG ARG A . n A 1 64 ILE 64 60 60 ILE ILE A . n A 1 65 HIS 65 61 61 HIS HIS A . n A 1 66 ALA 66 62 62 ALA ALA A . n A 1 67 SER 67 63 63 SER SER A . n A 1 68 ALA 68 64 64 ALA ALA A . n A 1 69 ASP 69 65 65 ASP ASP A . n A 1 70 ASP 70 66 66 ASP ASP A . n A 1 71 LEU 71 67 67 LEU LEU A . n A 1 72 ARG 72 68 68 ARG ARG A . n A 1 73 ALA 73 69 69 ALA ALA A . n A 1 74 LEU 74 70 70 LEU LEU A . n A 1 75 LEU 75 71 71 LEU LEU A . n A 1 76 ALA 76 72 72 ALA ALA A . n A 1 77 ARG 77 73 73 ARG ARG A . n A 1 78 PRO 78 74 74 PRO PRO A . n A 1 79 TRP 79 75 75 TRP TRP A . n A 1 80 LEU 80 76 76 LEU LEU A . n A 1 81 GLU 81 77 77 GLU GLU A . n A 1 82 GLY 82 78 78 GLY GLY A . n A 1 83 LEU 83 79 79 LEU LEU A . n A 1 84 ARG 84 80 80 ARG ARG A . n A 1 85 ASP 85 81 81 ASP ASP A . n A 1 86 HIS 86 82 82 HIS HIS A . n A 1 87 LEU 87 83 83 LEU LEU A . n A 1 88 GLN 88 84 84 GLN GLN A . n A 1 89 PHE 89 85 85 PHE PHE A . n A 1 90 GLY 90 86 86 GLY GLY A . n A 1 91 GLU 91 87 87 GLU GLU A . n A 1 92 PRO 92 88 88 PRO PRO A . n A 1 93 ALA 93 89 89 ALA ALA A . n A 1 94 VAL 94 90 90 VAL VAL A . n A 1 95 VAL 95 91 91 VAL VAL A . n A 1 96 PRO 96 92 92 PRO PRO A . n A 1 97 HIS 97 93 93 HIS HIS A . n A 1 98 PRO 98 94 94 PRO PRO A . n A 1 99 THR 99 95 95 THR THR A . n A 1 100 PRO 100 96 96 PRO PRO A . n A 1 101 TYR 101 97 97 TYR TYR A . n A 1 102 ARG 102 98 98 ARG ARG A . n A 1 103 GLN 103 99 99 GLN GLN A . n A 1 104 VAL 104 100 100 VAL VAL A . n A 1 105 SER 105 101 101 SER SER A . n A 1 106 ARG 106 102 102 ARG ARG A . n A 1 107 VAL 107 103 103 VAL VAL A . n A 1 108 GLN 108 104 104 GLN GLN A . n A 1 109 ALA 109 105 105 ALA ALA A . n A 1 110 LYS 110 106 ? ? ? A . n A 1 111 SER 111 107 ? ? ? A . n A 1 112 ASN 112 108 ? ? ? A . n A 1 113 PRO 113 109 109 PRO PRO A . n A 1 114 GLU 114 110 110 GLU GLU A . n A 1 115 ARG 115 111 111 ARG ARG A . n A 1 116 LEU 116 112 112 LEU LEU A . n A 1 117 ARG 117 113 113 ARG ARG A . n A 1 118 ARG 118 114 114 ARG ARG A . n A 1 119 ARG 119 115 115 ARG ARG A . n A 1 120 LEU 120 116 116 LEU LEU A . n A 1 121 MET 121 117 117 MET MET A . n A 1 122 ARG 122 118 118 ARG ARG A . n A 1 123 ARG 123 119 119 ARG ARG A . n A 1 124 HIS 124 120 ? ? ? A . n A 1 125 ASP 125 121 ? ? ? A . n A 1 126 LEU 126 122 ? ? ? A . n A 1 127 SER 127 123 ? ? ? A . n A 1 128 GLU 128 124 ? ? ? A . n A 1 129 GLU 129 125 ? ? ? A . n A 1 130 GLU 130 126 ? ? ? A . n A 1 131 ALA 131 127 ? ? ? A . n A 1 132 ARG 132 128 ? ? ? A . n A 1 133 LYS 133 129 ? ? ? A . n A 1 134 ARG 134 130 ? ? ? A . n A 1 135 ILE 135 131 ? ? ? A . n A 1 136 PRO 136 132 ? ? ? A . n A 1 137 ASP 137 133 ? ? ? A . n A 1 138 THR 138 134 ? ? ? A . n A 1 139 VAL 139 135 ? ? ? A . n A 1 140 ALA 140 136 ? ? ? A . n A 1 141 ARG 141 137 ? ? ? A . n A 1 142 THR 142 138 ? ? ? A . n A 1 143 LEU 143 139 139 LEU LEU A . n A 1 144 ASP 144 140 140 ASP ASP A . n A 1 145 LEU 145 141 141 LEU LEU A . n A 1 146 PRO 146 142 142 PRO PRO A . n A 1 147 PHE 147 143 143 PHE PHE A . n A 1 148 VAL 148 144 144 VAL VAL A . n A 1 149 THR 149 145 145 THR THR A . n A 1 150 LEU 150 146 146 LEU LEU A . n A 1 151 ARG 151 147 147 ARG ARG A . n A 1 152 SER 152 148 148 SER SER A . n A 1 153 GLN 153 149 149 GLN GLN A . n A 1 154 SER 154 150 150 SER SER A . n A 1 155 THR 155 151 151 THR THR A . n A 1 156 GLY 156 152 152 GLY GLY A . n A 1 157 GLN 157 153 153 GLN GLN A . n A 1 158 HIS 158 154 154 HIS HIS A . n A 1 159 PHE 159 155 155 PHE PHE A . n A 1 160 ARG 160 156 156 ARG ARG A . n A 1 161 LEU 161 157 157 LEU LEU A . n A 1 162 PHE 162 158 158 PHE PHE A . n A 1 163 ILE 163 159 159 ILE ILE A . n A 1 164 ARG 164 160 160 ARG ARG A . n A 1 165 HIS 165 161 161 HIS HIS A . n A 1 166 GLY 166 162 162 GLY GLY A . n A 1 167 PRO 167 163 163 PRO PRO A . n A 1 168 LEU 168 164 164 LEU LEU A . n A 1 169 GLN 169 165 165 GLN GLN A . n A 1 170 VAL 170 166 166 VAL VAL A . n A 1 171 THR 171 167 167 THR THR A . n A 1 172 ALA 172 168 168 ALA ALA A . n A 1 173 GLU 173 169 169 GLU GLU A . n A 1 174 GLU 174 170 170 GLU GLU A . n A 1 175 GLY 175 171 171 GLY GLY A . n A 1 176 GLY 176 172 172 GLY GLY A . n A 1 177 PHE 177 173 173 PHE PHE A . n A 1 178 THR 178 174 174 THR THR A . n A 1 179 CYS 179 175 175 CYS CYS A . n A 1 180 TYR 180 176 176 TYR TYR A . n A 1 181 GLY 181 177 177 GLY GLY A . n A 1 182 LEU 182 178 178 LEU LEU A . n A 1 183 SER 183 179 179 SER SER A . n A 1 184 LYS 184 180 180 LYS LYS A . n A 1 185 GLY 185 181 181 GLY GLY A . n A 1 186 GLY 186 182 182 GLY GLY A . n A 1 187 PHE 187 183 183 PHE PHE A . n A 1 188 VAL 188 184 184 VAL VAL A . n A 1 189 PRO 189 185 185 PRO PRO A . n A 1 190 TRP 190 186 186 TRP TRP A . n A 1 191 PHE 191 187 187 PHE PHE A . n B 2 1 C 1 6 6 C C B . n B 2 2 U 2 7 7 U U B . n B 2 3 G 3 8 8 G G B . n B 2 4 C 4 9 9 C C B . n B 2 5 C 5 10 10 C C B . n B 2 6 G 6 11 11 G G B . n B 2 7 U 7 12 12 U U B . n B 2 8 A 8 13 13 A A B . n B 2 9 U 9 14 14 U U B . n B 2 10 A 10 15 15 A A B . n B 2 11 G 11 16 16 G G B . n B 2 12 G 12 17 17 G G B . n B 2 13 C 13 18 18 C C B . n B 2 14 A 14 19 19 A A B . n B 2 15 DG 15 20 20 DG DG B . n B 2 16 C 16 21 21 C C B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 HOH 1 2001 2001 HOH HOH A . C 3 HOH 2 2002 2002 HOH HOH A . C 3 HOH 3 2003 2003 HOH HOH A . C 3 HOH 4 2004 2004 HOH HOH A . C 3 HOH 5 2005 2005 HOH HOH A . C 3 HOH 6 2006 2006 HOH HOH A . C 3 HOH 7 2007 2007 HOH HOH A . C 3 HOH 8 2008 2008 HOH HOH A . C 3 HOH 9 2009 2009 HOH HOH A . C 3 HOH 10 2010 2010 HOH HOH A . C 3 HOH 11 2011 2011 HOH HOH A . C 3 HOH 12 2012 2012 HOH HOH A . C 3 HOH 13 2013 2013 HOH HOH A . C 3 HOH 14 2014 2014 HOH HOH A . C 3 HOH 15 2015 2015 HOH HOH A . C 3 HOH 16 2016 2016 HOH HOH A . C 3 HOH 17 2017 2017 HOH HOH A . C 3 HOH 18 2018 2018 HOH HOH A . C 3 HOH 19 2019 2019 HOH HOH A . C 3 HOH 20 2020 2020 HOH HOH A . C 3 HOH 21 2021 2021 HOH HOH A . C 3 HOH 22 2022 2022 HOH HOH A . C 3 HOH 23 2023 2023 HOH HOH A . C 3 HOH 24 2024 2024 HOH HOH A . C 3 HOH 25 2025 2025 HOH HOH A . C 3 HOH 26 2026 2026 HOH HOH A . C 3 HOH 27 2027 2027 HOH HOH A . C 3 HOH 28 2028 2028 HOH HOH A . C 3 HOH 29 2029 2029 HOH HOH A . C 3 HOH 30 2030 2030 HOH HOH A . C 3 HOH 31 2031 2031 HOH HOH A . C 3 HOH 32 2032 2032 HOH HOH A . D 3 HOH 1 2001 2001 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1570 ? 1 MORE -11.4 ? 1 'SSA (A^2)' 11160 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 2004 ? C HOH . 2 1 A HOH 2016 ? C HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-09-22 2 'Structure model' 1 1 2011-05-08 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 11.7808 1.5263 28.4742 0.1345 0.1781 0.1568 -0.0291 -0.0291 0.0476 3.2463 2.1025 2.7374 0.7237 -0.2828 0.4879 -0.2007 0.7734 0.2446 -0.1830 0.2306 0.1076 0.0566 -0.0286 0.0005 'X-RAY DIFFRACTION' 2 ? refined 17.8865 -13.0402 0.1798 1.2494 1.5041 0.3849 0.0876 -0.0535 -0.2097 -0.0097 0.0346 0.0139 -0.0025 -0.0061 0.0245 0.5735 0.1235 -0.5211 -0.0876 0.1549 0.8109 0.3878 0.0052 -0.0021 'X-RAY DIFFRACTION' 3 ? refined 18.7012 -5.2122 5.9562 0.8394 1.7491 0.2274 0.0603 0.2080 -0.0441 0.6555 0.8205 0.1971 0.5399 -0.2523 0.0253 0.1190 0.7646 0.4197 -1.1020 -0.2210 -0.0780 0.4709 0.1305 -0.0032 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? 'CHAIN A AND NOT RESID 109:136' 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? 'CHAIN A AND RESID 109:136' 'X-RAY DIFFRACTION' 3 3 ? ? ? ? ? ? ? ? ? 'CHAIN B' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal PHENIX refinement '(PHENIX.REFINE)' ? 1 XDS 'data reduction' . ? 2 XSCALE 'data scaling' . ? 3 PHENIX phasing . ? 4 # _pdbx_entry_details.entry_id 2XLI _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THE SEQUENCE GSFT AT THE N-TERMINUS IS DERIVED FROM THE EXPRESSION VECTOR. THE DOWNSTREAM SEQUENCE MDHYLDIRLRPDPEFPPAQL IS NOT PRESENT IN THE GB YP_790814 ENTRY DUE TO MISANNOTATED METHIONINE START CODON. THE REASON FOR THE CONFLICT AT RESIDUE 166 IS THAT A3KUJ4 IS A DIFFERENT PSEUDOMONAS AERUGINOSA STRAIN THAN THE GENE SOURCE FOR 2XLI. ; # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 38 ? ? -141.01 29.05 2 1 LEU A 47 ? ? -39.80 136.51 3 1 LEU A 79 ? ? -143.02 -17.15 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 14 ? CB ? A GLU 18 CB 2 1 Y 1 A GLU 14 ? CG ? A GLU 18 CG 3 1 Y 1 A GLU 14 ? CD ? A GLU 18 CD 4 1 Y 1 A GLU 14 ? OE1 ? A GLU 18 OE1 5 1 Y 1 A GLU 14 ? OE2 ? A GLU 18 OE2 6 1 Y 1 A ARG 111 ? CG ? A ARG 115 CG 7 1 Y 1 A ARG 111 ? CD ? A ARG 115 CD 8 1 Y 1 A ARG 111 ? NE ? A ARG 115 NE 9 1 Y 1 A ARG 111 ? CZ ? A ARG 115 CZ 10 1 Y 1 A ARG 111 ? NH1 ? A ARG 115 NH1 11 1 Y 1 A ARG 111 ? NH2 ? A ARG 115 NH2 12 1 Y 1 A LEU 112 ? CG ? A LEU 116 CG 13 1 Y 1 A LEU 112 ? CD1 ? A LEU 116 CD1 14 1 Y 1 A LEU 112 ? CD2 ? A LEU 116 CD2 15 1 Y 1 A ARG 113 ? CG ? A ARG 117 CG 16 1 Y 1 A ARG 113 ? CD ? A ARG 117 CD 17 1 Y 1 A ARG 113 ? NE ? A ARG 117 NE 18 1 Y 1 A ARG 113 ? CZ ? A ARG 117 CZ 19 1 Y 1 A ARG 113 ? NH1 ? A ARG 117 NH1 20 1 Y 1 A ARG 113 ? NH2 ? A ARG 117 NH2 21 1 Y 1 A ARG 114 ? CG ? A ARG 118 CG 22 1 Y 1 A ARG 114 ? CD ? A ARG 118 CD 23 1 Y 1 A ARG 114 ? NE ? A ARG 118 NE 24 1 Y 1 A ARG 114 ? CZ ? A ARG 118 CZ 25 1 Y 1 A ARG 114 ? NH1 ? A ARG 118 NH1 26 1 Y 1 A ARG 114 ? NH2 ? A ARG 118 NH2 27 1 Y 1 A LEU 116 ? CG ? A LEU 120 CG 28 1 Y 1 A LEU 116 ? CD1 ? A LEU 120 CD1 29 1 Y 1 A LEU 116 ? CD2 ? A LEU 120 CD2 30 1 Y 1 A ARG 118 ? CG ? A ARG 122 CG 31 1 Y 1 A ARG 118 ? CD ? A ARG 122 CD 32 1 Y 1 A ARG 118 ? NE ? A ARG 122 NE 33 1 Y 1 A ARG 118 ? CZ ? A ARG 122 CZ 34 1 Y 1 A ARG 118 ? NH1 ? A ARG 122 NH1 35 1 Y 1 A ARG 118 ? NH2 ? A ARG 122 NH2 36 1 Y 1 B U 14 ? N1 ? B U 9 N1 37 1 Y 1 B U 14 ? C2 ? B U 9 C2 38 1 Y 1 B U 14 ? O2 ? B U 9 O2 39 1 Y 1 B U 14 ? N3 ? B U 9 N3 40 1 Y 1 B U 14 ? C4 ? B U 9 C4 41 1 Y 1 B U 14 ? O4 ? B U 9 O4 42 1 Y 1 B U 14 ? C5 ? B U 9 C5 43 1 Y 1 B U 14 ? C6 ? B U 9 C6 44 1 Y 1 B C 21 ? "C5'" ? B C 16 "C5'" 45 1 Y 1 B C 21 ? "C4'" ? B C 16 "C4'" 46 1 Y 1 B C 21 ? "O4'" ? B C 16 "O4'" 47 1 Y 1 B C 21 ? "C3'" ? B C 16 "C3'" 48 1 Y 1 B C 21 ? "O3'" ? B C 16 "O3'" 49 1 Y 1 B C 21 ? "C2'" ? B C 16 "C2'" 50 1 Y 1 B C 21 ? "O2'" ? B C 16 "O2'" 51 1 Y 1 B C 21 ? "C1'" ? B C 16 "C1'" 52 1 Y 1 B C 21 ? N1 ? B C 16 N1 53 1 Y 1 B C 21 ? C2 ? B C 16 C2 54 1 Y 1 B C 21 ? O2 ? B C 16 O2 55 1 Y 1 B C 21 ? N3 ? B C 16 N3 56 1 Y 1 B C 21 ? C4 ? B C 16 C4 57 1 Y 1 B C 21 ? N4 ? B C 16 N4 58 1 Y 1 B C 21 ? C5 ? B C 16 C5 59 1 Y 1 B C 21 ? C6 ? B C 16 C6 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -3 ? A GLY 1 2 1 Y 1 A SER -2 ? A SER 2 3 1 Y 1 A LYS 106 ? A LYS 110 4 1 Y 1 A SER 107 ? A SER 111 5 1 Y 1 A ASN 108 ? A ASN 112 6 1 Y 1 A HIS 120 ? A HIS 124 7 1 Y 1 A ASP 121 ? A ASP 125 8 1 Y 1 A LEU 122 ? A LEU 126 9 1 Y 1 A SER 123 ? A SER 127 10 1 Y 1 A GLU 124 ? A GLU 128 11 1 Y 1 A GLU 125 ? A GLU 129 12 1 Y 1 A GLU 126 ? A GLU 130 13 1 Y 1 A ALA 127 ? A ALA 131 14 1 Y 1 A ARG 128 ? A ARG 132 15 1 Y 1 A LYS 129 ? A LYS 133 16 1 Y 1 A ARG 130 ? A ARG 134 17 1 Y 1 A ILE 131 ? A ILE 135 18 1 Y 1 A PRO 132 ? A PRO 136 19 1 Y 1 A ASP 133 ? A ASP 137 20 1 Y 1 A THR 134 ? A THR 138 21 1 Y 1 A VAL 135 ? A VAL 139 22 1 Y 1 A ALA 136 ? A ALA 140 23 1 Y 1 A ARG 137 ? A ARG 141 24 1 Y 1 A THR 138 ? A THR 142 # _ndb_struct_conf_na.entry_id 2XLI _ndb_struct_conf_na.feature 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B C 1 1_555 B DG 15 1_555 0.013 -0.380 -0.088 -11.214 1.278 -3.403 1 B_C6:DG20_B B 6 ? B 20 ? 19 1 1 B U 2 1_555 B A 14 1_555 0.414 -0.114 -0.047 2.933 -6.363 9.986 2 B_U7:A19_B B 7 ? B 19 ? 20 1 1 B G 3 1_555 B C 13 1_555 -0.317 0.034 -0.200 -0.677 -6.561 1.859 3 B_G8:C18_B B 8 ? B 18 ? 19 1 1 B C 4 1_555 B G 12 1_555 0.636 -0.245 -0.585 12.981 -11.803 -1.184 4 B_C9:G17_B B 9 ? B 17 ? 19 1 1 B C 5 1_555 B G 11 1_555 0.198 0.276 -0.494 5.349 7.937 2.808 5 B_C10:G16_B B 10 ? B 16 ? 19 1 1 B G 6 1_555 B A 10 1_555 7.008 -4.443 0.311 24.030 13.859 -5.197 6 B_G11:A15_B B 11 ? B 15 ? 11 10 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B C 1 1_555 B DG 15 1_555 B U 2 1_555 B A 14 1_555 0.363 -1.582 2.913 -1.232 12.444 31.927 -4.262 -0.772 2.149 21.614 2.140 34.229 1 BB_C6U7:A19DG20_BB B 6 ? B 20 ? B 7 ? B 19 ? 1 B U 2 1_555 B A 14 1_555 B G 3 1_555 B C 13 1_555 0.030 -1.856 3.358 0.449 4.667 26.010 -5.274 0.051 2.985 10.263 -0.987 26.423 2 BB_U7G8:C18A19_BB B 7 ? B 19 ? B 8 ? B 18 ? 1 B G 3 1_555 B C 13 1_555 B C 4 1_555 B G 12 1_555 -0.857 -2.191 3.028 -1.741 -4.775 32.118 -3.095 1.233 3.350 -8.563 3.122 32.507 3 BB_G8C9:G17C18_BB B 8 ? B 18 ? B 9 ? B 17 ? 1 B C 4 1_555 B G 12 1_555 B C 5 1_555 B G 11 1_555 -0.120 -2.429 3.692 -2.590 6.919 25.691 -7.120 -0.437 2.946 15.165 5.676 26.715 4 BB_C9C10:G16G17_BB B 9 ? B 17 ? B 10 ? B 16 ? 1 B C 5 1_555 B G 11 1_555 B G 6 1_555 B A 10 1_555 -0.603 -0.413 2.909 -1.696 9.493 60.184 -0.810 0.523 2.835 9.401 1.679 60.880 5 BB_C10G11:A15G16_BB B 10 ? B 16 ? B 11 ? B 15 ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #