HEADER TRANSFERASE 22-JUL-10 2XLY TITLE STRUCTURAL AND MECHANISTIC ANALYSIS OF THE MAGNESIUM-INDEPENDENT TITLE 2 AROMATIC PRENYLTRANSFERASE CLOQ FROM THE CLOROBIOCIN BIOSYNTHETIC TITLE 3 PATHWAY COMPND MOL_ID: 1; COMPND 2 MOLECULE: CLOQ; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: AROMATIC PRENYLTRANSFERASE; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: LIGAND-FREE FORM SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES ROSEOCHROMOGENES SUBSP. OSCITANS; SOURCE 3 ORGANISM_TAXID: 149682; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VARIANT: PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: CLOQ-PET28A KEYWDS TRANSFERASE, PT-BARREL, ANTIBIOTIC BIOSYNTHESIS EXPDTA X-RAY DIFFRACTION AUTHOR U.METZGER,S.KELLER,C.E.M.STEVENSON,L.HEIDE,D.M.LAWSON REVDAT 5 20-DEC-23 2XLY 1 REMARK REVDAT 4 06-MAR-19 2XLY 1 REMARK REVDAT 3 12-JUL-17 2XLY 1 REVDAT 2 08-DEC-10 2XLY 1 JRNL REVDAT 1 27-OCT-10 2XLY 0 JRNL AUTH U.METZGER,S.KELLER,C.E.M.STEVENSON,L.HEIDE,D.M.LAWSON JRNL TITL STRUCTURE AND MECHANISM OF THE MAGNESIUM-INDEPENDENT JRNL TITL 2 AROMATIC PRENYLTRANSFERASE CLOQ FROM THE CLOROBIOCIN JRNL TITL 3 BIOSYNTHETIC PATHWAY. JRNL REF J.MOL.BIOL. V. 404 611 2010 JRNL REFN ISSN 0022-2836 JRNL PMID 20946900 JRNL DOI 10.1016/J.JMB.2010.09.067 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0091 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.24 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 7947 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 411 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.18 REMARK 3 REFLECTION IN BIN (WORKING SET) : 573 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2710 REMARK 3 BIN FREE R VALUE SET COUNT : 38 REMARK 3 BIN FREE R VALUE : 0.3390 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2369 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.36000 REMARK 3 B22 (A**2) : -1.36000 REMARK 3 B33 (A**2) : 2.72000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.409 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.302 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 18.226 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.914 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.883 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2469 ; 0.015 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1654 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3368 ; 1.488 ; 1.928 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3976 ; 0.920 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 312 ; 6.807 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 117 ;33.855 ;22.051 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 359 ;19.417 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;19.763 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 364 ; 0.078 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2826 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 570 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1536 ; 0.540 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 624 ; 0.064 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2451 ; 1.073 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 933 ; 1.446 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 914 ; 2.633 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES REFINED INDIVIDUALLY. REMARK 4 REMARK 4 2XLY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-JUL-10. REMARK 100 THE DEPOSITION ID IS D_1290044728. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-MAR-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH3R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.542 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8365 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.990 REMARK 200 RESOLUTION RANGE LOW (A) : 23.240 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 13.12 REMARK 200 R MERGE (I) : 0.14000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 12.19 REMARK 200 R MERGE FOR SHELL (I) : 0.29000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.730 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 2XLQ REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: VAPOR DIFFUSION. PROTEIN AT 10 MG PER REMARK 280 ML WAS MIXED WITH AN EQUAL VOLUME OF 3 M SODIUM FORMATE, 2 MM REMARK 280 DITHIOTHREITOL IN 100 MM HEPES BUFFER AT PH 6.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 67.78500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 67.78500 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.85000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 67.78500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 23.92500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 67.78500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 71.77500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 67.78500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 71.77500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 67.78500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 23.92500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 67.78500 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 67.78500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 47.85000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 67.78500 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 67.78500 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 47.85000 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 67.78500 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 71.77500 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 67.78500 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 23.92500 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 67.78500 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 23.92500 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 67.78500 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 71.77500 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 67.78500 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 67.78500 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 47.85000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 ALA A 3 REMARK 465 LEU A 4 REMARK 465 PRO A 5 REMARK 465 ILE A 6 REMARK 465 GLN A 314 REMARK 465 HIS A 315 REMARK 465 THR A 316 REMARK 465 GLU A 317 REMARK 465 SER A 318 REMARK 465 THR A 319 REMARK 465 MET A 320 REMARK 465 GLY A 321 REMARK 465 GLY A 322 REMARK 465 ALA A 323 REMARK 465 ARG A 324 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 8 CG CD OE1 NE2 REMARK 470 GLU A 9 CG CD OE1 OE2 REMARK 470 GLU A 13 CG CD OE1 OE2 REMARK 470 LYS A 54 CE NZ REMARK 470 GLU A 262 CG CD OE1 OE2 REMARK 470 GLU A 303 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 113 NH2 ARG A 167 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 215 CA - CB - SG ANGL. DEV. = 6.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 116 -14.50 -145.18 REMARK 500 ALA A 119 -59.77 -122.75 REMARK 500 LEU A 128 66.73 -115.27 REMARK 500 ALA A 146 -23.87 -39.17 REMARK 500 LEU A 156 68.34 -110.53 REMARK 500 HIS A 223 -60.10 -98.38 REMARK 500 HIS A 223 -61.71 -97.68 REMARK 500 LYS A 236 60.73 33.67 REMARK 500 TYR A 284 -96.09 -103.21 REMARK 500 ASN A 287 81.38 61.69 REMARK 500 CYS A 297 -176.47 -69.51 REMARK 500 HIS A 300 122.43 -30.08 REMARK 500 GLU A 303 -83.10 44.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 69 ARG A 70 147.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEETS PRESENTED AS "AA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 10-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 11-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2XLQ RELATED DB: PDB REMARK 900 STRUCTURAL AND MECHANISTIC ANALYSIS OF THE MAGNESIUM-INDEPENDENT REMARK 900 AROMATIC PRENYLTRANSFERASE CLOQ FROM THE CLOROBIOCIN BIOSYNTHETIC REMARK 900 PATHWAY REMARK 999 REMARK 999 SEQUENCE REMARK 999 THERE IS AN ADDITIONAL TRIPEPTIDE (WITH SEQUENCE GLY-SER- REMARK 999 HIS) AT THE N-TERMINUS LEFT OVER AFTER PROTEOLYTIC REMARK 999 CLEAVAGE OF THE HIS-TAG DBREF 2XLY A 1 324 UNP Q8GHB2 Q8GHB2_9ACTO 1 324 SEQADV 2XLY GLY A -2 UNP Q8GHB2 EXPRESSION TAG SEQADV 2XLY SER A -1 UNP Q8GHB2 EXPRESSION TAG SEQADV 2XLY HIS A 0 UNP Q8GHB2 EXPRESSION TAG SEQRES 1 A 327 GLY SER HIS MET PRO ALA LEU PRO ILE ASP GLN GLU PHE SEQRES 2 A 327 ASP CYS GLU ARG PHE ARG ALA ASP ILE ARG ALA THR ALA SEQRES 3 A 327 ALA ALA ILE GLY ALA PRO ILE ALA HIS ARG LEU THR ASP SEQRES 4 A 327 THR VAL LEU GLU ALA PHE ARG ASP ASN PHE ALA GLN GLY SEQRES 5 A 327 ALA THR LEU TRP LYS THR THR SER GLN PRO GLY ASP GLN SEQRES 6 A 327 LEU SER TYR ARG PHE PHE SER ARG LEU LYS MET ASP THR SEQRES 7 A 327 VAL SER ARG ALA ILE ASP ALA GLY LEU LEU ASP ALA ALA SEQRES 8 A 327 HIS PRO THR LEU ALA VAL VAL ASP ALA TRP SER SER LEU SEQRES 9 A 327 TYR GLY GLY ALA PRO VAL GLN SER GLY ASP PHE ASP ALA SEQRES 10 A 327 GLY ARG GLY MET ALA LYS THR TRP LEU TYR PHE GLY GLY SEQRES 11 A 327 LEU ARG PRO ALA GLU ASP ILE LEU THR VAL PRO ALA LEU SEQRES 12 A 327 PRO ALA SER VAL GLN ALA ARG LEU LYS ASP PHE LEU ALA SEQRES 13 A 327 LEU GLY LEU ALA HIS VAL ARG PHE ALA ALA VAL ASP TRP SEQRES 14 A 327 ARG HIS HIS SER ALA ASN VAL TYR PHE ARG GLY LYS GLY SEQRES 15 A 327 PRO LEU ASP THR VAL GLN PHE ALA ARG ILE HIS ALA LEU SEQRES 16 A 327 SER GLY SER THR PRO PRO ALA ALA HIS VAL VAL GLU GLU SEQRES 17 A 327 VAL LEU ALA TYR MET PRO GLU ASP TYR CYS VAL ALA ILE SEQRES 18 A 327 THR LEU ASP LEU HIS SER GLY ASP ILE GLU ARG VAL CYS SEQRES 19 A 327 PHE TYR ALA LEU LYS VAL PRO LYS ASN ALA LEU PRO ARG SEQRES 20 A 327 ILE PRO THR ARG ILE ALA ARG PHE LEU GLU VAL ALA PRO SEQRES 21 A 327 SER HIS ASP VAL GLU GLU CYS ASN VAL ILE GLY TRP SER SEQRES 22 A 327 PHE GLY ARG SER GLY ASP TYR VAL LYS ALA GLU ARG SER SEQRES 23 A 327 TYR THR GLY ASN MET ALA GLU ILE LEU ALA GLY TRP ASN SEQRES 24 A 327 CYS PHE PHE HIS GLY GLU GLU GLY ARG ASP HIS ASP LEU SEQRES 25 A 327 ARG ALA LEU HIS GLN HIS THR GLU SER THR MET GLY GLY SEQRES 26 A 327 ALA ARG HELIX 1 1 ASP A 11 GLY A 27 1 17 HELIX 2 2 ALA A 31 PHE A 42 1 12 HELIX 3 3 PHE A 42 GLY A 49 1 8 HELIX 4 4 ASP A 74 ALA A 82 1 9 HELIX 5 5 THR A 91 ALA A 105 1 15 HELIX 6 6 ALA A 131 THR A 136 1 6 HELIX 7 7 PRO A 141 ALA A 146 1 6 HELIX 8 8 ARG A 147 LEU A 154 1 8 HELIX 9 9 ASP A 182 ALA A 191 1 10 HELIX 10 10 LEU A 192 GLY A 194 5 3 HELIX 11 11 ALA A 199 TYR A 209 1 11 HELIX 12 12 PRO A 238 LEU A 242 5 5 HELIX 13 13 PRO A 246 ALA A 256 1 11 HELIX 14 14 ASN A 287 GLY A 294 1 8 HELIX 15 15 ASP A 306 ALA A 311 1 6 SHEET 1 AA11 ALA A 50 THR A 56 0 SHEET 2 AA11 SER A 64 PHE A 68 -1 O SER A 64 N LYS A 54 SHEET 3 AA11 VAL A 107 ASP A 113 -1 O GLY A 110 N PHE A 67 SHEET 4 AA11 GLY A 117 PRO A 130 -1 O GLY A 117 N ASP A 113 SHEET 5 AA11 HIS A 158 ASP A 165 -1 O VAL A 159 N ARG A 129 SHEET 6 AA11 SER A 170 ARG A 176 -1 O SER A 170 N ASP A 165 SHEET 7 AA11 CYS A 215 ASP A 221 -1 O VAL A 216 N PHE A 175 SHEET 8 AA11 ILE A 227 VAL A 237 -1 O ARG A 229 N THR A 219 SHEET 9 AA11 ASN A 265 GLY A 272 -1 O ASN A 265 N VAL A 237 SHEET 10 AA11 TYR A 277 SER A 283 -1 O TYR A 277 N SER A 270 SHEET 11 AA11 ALA A 50 THR A 56 -1 O TRP A 53 N ARG A 282 CISPEP 1 GLY A 179 PRO A 180 0 8.84 CRYST1 135.570 135.570 95.700 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007376 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007376 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010449 0.00000