HEADER TRANSFERASE 23-JUL-10 2XM5 TITLE STRUCTURAL AND MECHANISTIC ANALYSIS OF THE MAGNESIUM-INDEPENDENT TITLE 2 AROMATIC PRENYLTRANSFERASE CLOQ FROM THE CLOROBIOCIN BIOSYNTHETIC TITLE 3 PATHWAY COMPND MOL_ID: 1; COMPND 2 MOLECULE: CLOQ; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: AROMATIC PRENYLTRANSFERASE; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 OTHER_DETAILS: C215S MUTANT SOAKED IN 4-HYDROXYPHENYL PYRUVATE. COMPND 8 UNINTERPRETABLE RESIDUAL ELECTRON DENSITY IN ACTIVE SITE PRESUMED TO COMPND 9 BE THIS LIGAND. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES ROSEOCHROMOGENES SUBSP. OSCITANS; SOURCE 3 ORGANISM_TAXID: 149682; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VARIANT: PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET28A; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: CLOQ-PET28A KEYWDS TRANSFERASE, PT-BARREL, ANTIBIOTIC BIOSYNTHESIS EXPDTA X-RAY DIFFRACTION AUTHOR U.METZGER,S.KELLER,C.E.M.STEVENSON,L.HEIDE,D.M.LAWSON REVDAT 4 20-DEC-23 2XM5 1 REMARK REVDAT 3 06-MAR-19 2XM5 1 REMARK REVDAT 2 08-DEC-10 2XM5 1 JRNL REVDAT 1 27-OCT-10 2XM5 0 JRNL AUTH U.METZGER,S.KELLER,C.E.M.STEVENSON,L.HEIDE,D.M.LAWSON JRNL TITL STRUCTURE AND MECHANISM OF THE MAGNESIUM-INDEPENDENT JRNL TITL 2 AROMATIC PRENYLTRANSFERASE CLOQ FROM THE CLOROBIOCIN JRNL TITL 3 BIOSYNTHETIC PATHWAY. JRNL REF J.MOL.BIOL. V. 404 611 2010 JRNL REFN ISSN 0022-2836 JRNL PMID 20946900 JRNL DOI 10.1016/J.JMB.2010.09.067 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0091 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.83 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 37537 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.186 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1967 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2706 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2520 REMARK 3 BIN FREE R VALUE SET COUNT : 150 REMARK 3 BIN FREE R VALUE : 0.2560 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2412 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 31 REMARK 3 SOLVENT ATOMS : 269 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.00000 REMARK 3 B22 (A**2) : -1.00000 REMARK 3 B33 (A**2) : 2.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.100 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.096 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.060 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.945 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.956 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2661 ; 0.016 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1815 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3629 ; 1.447 ; 1.935 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4374 ; 0.907 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 348 ; 6.111 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 132 ;31.849 ;22.348 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 404 ;12.988 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;14.513 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 386 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3069 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 611 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1641 ; 0.915 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 667 ; 0.249 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2613 ; 1.676 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1020 ; 2.572 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1002 ; 4.166 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES REFINED INDIVIDUALLY. REMARK 4 REMARK 4 2XM5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-JUL-10. REMARK 100 THE DEPOSITION ID IS D_1290044746. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JUL-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.980 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39516 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 44.090 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 14.18 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.1200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 14.47 REMARK 200 R MERGE FOR SHELL (I) : 0.54000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.430 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 2XLQ REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: VAPOR DIFFUSION. PROTEIN (10 MG/ML) REMARK 280 WAS MIXED WITH AN EQUAL VOLUME OF 3 M SODIUM FORMATE, 2 MM REMARK 280 DITHIOTHREITOL, 100 MM HEPES PH 6.5 . REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 67.72500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 67.72500 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.67000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 67.72500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 24.83500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 67.72500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 74.50500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 67.72500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 74.50500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 67.72500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 24.83500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 67.72500 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 67.72500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 49.67000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 67.72500 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 67.72500 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 49.67000 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 67.72500 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 74.50500 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 67.72500 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 24.83500 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 67.72500 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 24.83500 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 67.72500 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 74.50500 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 67.72500 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 67.72500 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 49.67000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, CYS 215 TO SER REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 ALA A 3 REMARK 465 LEU A 4 REMARK 465 THR A 316 REMARK 465 GLU A 317 REMARK 465 SER A 318 REMARK 465 THR A 319 REMARK 465 MET A 320 REMARK 465 GLY A 321 REMARK 465 GLY A 322 REMARK 465 ALA A 323 REMARK 465 ARG A 324 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 244 NE CZ NH1 NH2 REMARK 470 GLN A 314 CG CD OE1 NE2 REMARK 470 HIS A 315 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR A 91 ND1 HIS A 169 2.14 REMARK 500 O GLU A 303 O HOH A 2263 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2176 O HOH A 2239 5655 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 284 -72.30 -120.65 REMARK 500 ASN A 287 66.24 70.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 ETHYLENE GLYCOL (EDO): ETHYLENE GLYCOL WAS USED AS A REMARK 600 CRYOPROTECTANT REMARK 600 FORMATE (FMT): SODIUM FORMATE WAS A COMPONENT OF THE REMARK 600 PRECIPITANT REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEETS PRESENTED AS "AA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 10-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 11-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1316 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 1317 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 1318 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 1319 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 1320 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 1321 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 1322 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 1323 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 1324 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 1325 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2XLQ RELATED DB: PDB REMARK 900 STRUCTURAL AND MECHANISTIC ANALYSIS OF THE MAGNESIUM-INDEPENDENT REMARK 900 AROMATIC PRENYLTRANSFERASE CLOQ FROM THE CLOROBIOCIN BIOSYNTHETIC REMARK 900 PATHWAY REMARK 900 RELATED ID: 2XLY RELATED DB: PDB REMARK 900 STRUCTURAL AND MECHANISTIC ANALYSIS OF THE MAGNESIUM-INDEPENDENT REMARK 900 AROMATIC PRENYLTRANSFERASE CLOQ FROM THE CLOROBIOCIN BIOSYNTHETIC REMARK 900 PATHWAY REMARK 999 REMARK 999 SEQUENCE REMARK 999 THERE ARE AN ADDITIONAL THREE RESIDUES (WITH SEQUENCE GLY-SER- REMARK 999 HIS) AT THE N-TERMINUS LEFT OVER AFTER PROTEOLYTIC CLEAVAGE REMARK 999 OF THE HIS-TAG DBREF 2XM5 A 1 324 UNP Q8GHB2 Q8GHB2_9ACTO 1 324 SEQADV 2XM5 GLY A -2 UNP Q8GHB2 EXPRESSION TAG SEQADV 2XM5 SER A -1 UNP Q8GHB2 EXPRESSION TAG SEQADV 2XM5 HIS A 0 UNP Q8GHB2 EXPRESSION TAG SEQADV 2XM5 SER A 215 UNP Q8GHB2 CYS 215 ENGINEERED MUTATION SEQRES 1 A 327 GLY SER HIS MET PRO ALA LEU PRO ILE ASP GLN GLU PHE SEQRES 2 A 327 ASP CYS GLU ARG PHE ARG ALA ASP ILE ARG ALA THR ALA SEQRES 3 A 327 ALA ALA ILE GLY ALA PRO ILE ALA HIS ARG LEU THR ASP SEQRES 4 A 327 THR VAL LEU GLU ALA PHE ARG ASP ASN PHE ALA GLN GLY SEQRES 5 A 327 ALA THR LEU TRP LYS THR THR SER GLN PRO GLY ASP GLN SEQRES 6 A 327 LEU SER TYR ARG PHE PHE SER ARG LEU LYS MET ASP THR SEQRES 7 A 327 VAL SER ARG ALA ILE ASP ALA GLY LEU LEU ASP ALA ALA SEQRES 8 A 327 HIS PRO THR LEU ALA VAL VAL ASP ALA TRP SER SER LEU SEQRES 9 A 327 TYR GLY GLY ALA PRO VAL GLN SER GLY ASP PHE ASP ALA SEQRES 10 A 327 GLY ARG GLY MET ALA LYS THR TRP LEU TYR PHE GLY GLY SEQRES 11 A 327 LEU ARG PRO ALA GLU ASP ILE LEU THR VAL PRO ALA LEU SEQRES 12 A 327 PRO ALA SER VAL GLN ALA ARG LEU LYS ASP PHE LEU ALA SEQRES 13 A 327 LEU GLY LEU ALA HIS VAL ARG PHE ALA ALA VAL ASP TRP SEQRES 14 A 327 ARG HIS HIS SER ALA ASN VAL TYR PHE ARG GLY LYS GLY SEQRES 15 A 327 PRO LEU ASP THR VAL GLN PHE ALA ARG ILE HIS ALA LEU SEQRES 16 A 327 SER GLY SER THR PRO PRO ALA ALA HIS VAL VAL GLU GLU SEQRES 17 A 327 VAL LEU ALA TYR MET PRO GLU ASP TYR SER VAL ALA ILE SEQRES 18 A 327 THR LEU ASP LEU HIS SER GLY ASP ILE GLU ARG VAL CYS SEQRES 19 A 327 PHE TYR ALA LEU LYS VAL PRO LYS ASN ALA LEU PRO ARG SEQRES 20 A 327 ILE PRO THR ARG ILE ALA ARG PHE LEU GLU VAL ALA PRO SEQRES 21 A 327 SER HIS ASP VAL GLU GLU CYS ASN VAL ILE GLY TRP SER SEQRES 22 A 327 PHE GLY ARG SER GLY ASP TYR VAL LYS ALA GLU ARG SER SEQRES 23 A 327 TYR THR GLY ASN MET ALA GLU ILE LEU ALA GLY TRP ASN SEQRES 24 A 327 CYS PHE PHE HIS GLY GLU GLU GLY ARG ASP HIS ASP LEU SEQRES 25 A 327 ARG ALA LEU HIS GLN HIS THR GLU SER THR MET GLY GLY SEQRES 26 A 327 ALA ARG HET EDO A1316 4 HET FMT A1317 3 HET FMT A1318 3 HET FMT A1319 3 HET FMT A1320 3 HET FMT A1321 3 HET FMT A1322 3 HET FMT A1323 3 HET FMT A1324 3 HET FMT A1325 3 HETNAM EDO 1,2-ETHANEDIOL HETNAM FMT FORMIC ACID HETSYN EDO ETHYLENE GLYCOL FORMUL 2 EDO C2 H6 O2 FORMUL 3 FMT 9(C H2 O2) FORMUL 12 HOH *269(H2 O) HELIX 1 1 ASP A 11 GLY A 27 1 17 HELIX 2 2 ALA A 31 GLY A 49 1 19 HELIX 3 3 ASP A 74 ALA A 82 1 9 HELIX 4 4 THR A 91 ALA A 105 1 15 HELIX 5 5 ALA A 131 THR A 136 1 6 HELIX 6 6 PRO A 141 ALA A 146 1 6 HELIX 7 7 ARG A 147 LEU A 154 1 8 HELIX 8 8 ASP A 182 LEU A 192 1 11 HELIX 9 9 ALA A 199 TYR A 209 1 11 HELIX 10 10 PRO A 238 LEU A 242 5 5 HELIX 11 11 PRO A 246 ALA A 256 1 11 HELIX 12 12 ASN A 287 TRP A 295 1 9 HELIX 13 13 ASP A 306 HIS A 315 1 10 SHEET 1 AA11 ALA A 50 THR A 56 0 SHEET 2 AA11 SER A 64 PHE A 68 -1 O SER A 64 N LYS A 54 SHEET 3 AA11 VAL A 107 ASP A 113 -1 O GLY A 110 N PHE A 67 SHEET 4 AA11 GLY A 117 PRO A 130 -1 O GLY A 117 N ASP A 113 SHEET 5 AA11 HIS A 158 ASP A 165 -1 O VAL A 159 N ARG A 129 SHEET 6 AA11 SER A 170 ARG A 176 -1 O SER A 170 N ASP A 165 SHEET 7 AA11 SER A 215 ASP A 221 -1 O VAL A 216 N PHE A 175 SHEET 8 AA11 ILE A 227 LEU A 235 -1 N GLU A 228 O THR A 219 SHEET 9 AA11 ASN A 265 GLY A 272 -1 O ILE A 267 N ALA A 234 SHEET 10 AA11 TYR A 277 THR A 285 -1 O TYR A 277 N SER A 270 SHEET 11 AA11 ALA A 50 THR A 56 -1 O THR A 51 N THR A 285 CISPEP 1 GLY A 179 PRO A 180 0 2.49 SITE 1 AC1 5 GLU A 40 ALA A 41 ARG A 43 ASP A 44 SITE 2 AC1 5 HOH A2077 SITE 1 AC2 7 LYS A 54 LYS A 120 TRP A 122 ALA A 163 SITE 2 AC2 7 ASN A 172 TYR A 174 HOH A2110 SITE 1 AC3 6 SER A 57 ALA A 199 ALA A 200 TYR A 277 SITE 2 AC3 6 HOH A2178 HOH A2265 SITE 1 AC4 8 ARG A 176 SER A 215 TYR A 233 LEU A 235 SITE 2 AC4 8 CYS A 297 PHE A 298 HOH A2210 HOH A2266 SITE 1 AC5 6 TYR A 124 GLY A 127 ARG A 160 TRP A 295 SITE 2 AC5 6 ASN A 296 HOH A2257 SITE 1 AC6 1 TYR A 102 SITE 1 AC7 4 GLN A 58 ARG A 229 SER A 274 GLY A 275 SITE 1 AC8 4 ASP A 11 CYS A 12 ARG A 43 HOH A2268 SITE 1 AC9 3 ARG A 20 HIS A 32 ASP A 36 SITE 1 BC1 6 GLY A 27 ALA A 31 HIS A 32 ARG A 33 SITE 2 BC1 6 LEU A 34 HOH A2269 CRYST1 135.450 135.450 99.340 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007383 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007383 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010066 0.00000