HEADER DNA BINDING PROTEIN/DNA 26-JUL-10 2XMA TITLE DEINOCOCCUS RADIODURANS ISDRA2 TRANSPOSASE RIGHT END DNA COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSPOSASE; COMPND 3 CHAIN: A, B, E, F; COMPND 4 SYNONYM: DRA2 TRANSPOSASE; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DRA2 TRANSPOSASE RIGHT END RECOGNITION SITE; COMPND 8 CHAIN: C, D, G, H; COMPND 9 ENGINEERED: YES; COMPND 10 OTHER_DETAILS: ISDRA2 TRANSPOSON SEQUENCE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DEINOCOCCUS RADIODURANS; SOURCE 3 ORGANISM_TAXID: 1299; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: DEINOCOCCUS RADIODURANS; SOURCE 10 ORGANISM_TAXID: 1299 KEYWDS DNA BINDING PROTEIN-DNA COMPLEX, TRANSPOSITION, MOBILE ELEMENT EXPDTA X-RAY DIFFRACTION AUTHOR A.B.HICKMAN,J.A.JAMES,O.BARABAS,C.PASTERNAK,B.TON-HOANG,M.CHANDLER, AUTHOR 2 S.SOMMER,F.DYDA REVDAT 4 20-DEC-23 2XMA 1 REMARK SHEET LINK REVDAT 3 28-JUN-17 2XMA 1 REMARK REVDAT 2 12-JAN-11 2XMA 1 JRNL REVDAT 1 13-OCT-10 2XMA 0 JRNL AUTH A.B.HICKMAN,J.A.JAMES,O.BARABAS,C.PASTERNAK,B.TON-HOANG, JRNL AUTH 2 M.CHANDLER,S.SOMMER,F.DYDA JRNL TITL DNA RECOGNITION AND THE PRECLEAVAGE STATE DURING JRNL TITL 2 SINGLE-STRANDED DNA TRANSPOSITION IN D. RADIODURANS. JRNL REF EMBO J. V. 29 3840 2010 JRNL REFN ISSN 0261-4189 JRNL PMID 20890269 JRNL DOI 10.1038/EMBOJ.2010.241 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 10000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 94.9 REMARK 3 NUMBER OF REFLECTIONS : 47910 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.900 REMARK 3 FREE R VALUE TEST SET COUNT : 953 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4458 REMARK 3 NUCLEIC ACID ATOMS : 2778 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 229 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.05100 REMARK 3 B22 (A**2) : -1.03400 REMARK 3 B33 (A**2) : 4.08500 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 4.60200 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 2.772 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.31 REMARK 3 BSOL : 39.92 REMARK 3 REMARK 3 NCS MODEL : RESTRAINTS REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PARHCSDX.PRO REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP_NOPUCKERS.PARAM REMARK 3 PARAMETER FILE 3 : PARAM19.SOL REMARK 3 PARAMETER FILE 4 : MO4_XPLOR_H.PAR REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : TOPHCSDX.PRO REMARK 3 TOPOLOGY FILE 2 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : TOPH19_MOD.SOL REMARK 3 TOPOLOGY FILE 4 : MO4_XPLOR_H.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2XMA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-JUL-10. REMARK 100 THE DEPOSITION ID IS D_1290044765. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-MAR-08 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MULTI-LAYER MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50130 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 3.620 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05000 REMARK 200 FOR THE DATA SET : 16.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.37 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.39000 REMARK 200 FOR SHELL : 3.090 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 2XM3 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: COMLEX BUFFER: 35MM TRIS-HCL PH 8.O, REMARK 280 0.1 M NA-MALONATE 10MM MGCL2M 0.5 MM TCEP PRECIPITATING AGENT: REMARK 280 0.16 MM MGCL2, 0.1 M TRIS-HCL PH 7.9, 3.4M 1,6-HEXANEDIOL FROZEN REMARK 280 IN LIQUID PROPANE W/O ADDITIONAL CRYOPROTECTION, PH 8.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 44.64400 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 25300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 36670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -191.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 137 REMARK 465 ASP A 138 REMARK 465 LYS A 139 REMARK 465 GLU A 140 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 HIS B 137 REMARK 465 ASP B 138 REMARK 465 LYS B 139 REMARK 465 GLU B 140 REMARK 465 LYS E 139 REMARK 465 GLU E 140 REMARK 465 HIS F 137 REMARK 465 ASP F 138 REMARK 465 LYS F 139 REMARK 465 GLU F 140 REMARK 465 DG H 11 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 DA H 12 P OP1 OP2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO B 114 1.51 -67.38 REMARK 500 ASN E 124 -162.26 -104.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DA D 15 0.05 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C1045 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PRO A 114 O REMARK 620 2 HOH A2038 O 78.3 REMARK 620 3 DC C 31 OP2 79.5 97.1 REMARK 620 4 HOH C2022 O 96.1 174.2 83.5 REMARK 620 5 HOH C2026 O 161.1 84.0 109.6 101.3 REMARK 620 6 HOH C2027 O 81.0 87.8 158.6 89.7 91.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG D1045 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A2004 O REMARK 620 2 PRO B 114 O 81.0 REMARK 620 3 DC D 31 OP2 93.0 83.1 REMARK 620 4 HOH D2014 O 170.0 100.7 77.5 REMARK 620 5 HOH D2016 O 85.4 163.4 107.1 94.4 REMARK 620 6 HOH D2018 O 94.2 78.9 159.3 95.8 92.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG E1139 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PRO E 114 O REMARK 620 2 HOH E2021 O 75.9 REMARK 620 3 DC G 31 OP2 79.4 91.9 REMARK 620 4 HOH G2006 O 110.7 164.8 76.4 REMARK 620 5 HOH G2009 O 155.8 79.9 100.7 92.6 REMARK 620 6 HOH G2010 O 83.8 84.7 163.2 109.3 94.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG H1045 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PRO F 114 O REMARK 620 2 DC H 31 OP2 78.4 REMARK 620 3 HOH H2006 O 114.5 82.9 REMARK 620 4 HOH H2007 O 160.3 97.2 83.7 REMARK 620 5 HOH H2008 O 83.0 104.6 162.3 79.5 REMARK 620 6 HOH H2009 O 83.0 151.1 85.0 107.3 94.7 REMARK 620 N 1 2 3 4 5 REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG C 1045 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG D 1045 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG E 1139 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG H 1045 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2XM3 RELATED DB: PDB REMARK 900 DEINOCOCCUS RADIODURANS ISDRA2 TRANSPOSASE LEFT END DNA COMPLEX REMARK 999 REMARK 999 SEQUENCE REMARK 999 IN CHAINS A,E,F THE RENMANTS OF THE NTERM HIS TAG CLEAVAGE REMARK 999 BY THROMBIN ARE VISIBLE IN THE ELECTRON DENSITY. THESE REMARK 999 RESIDUES ARE -2 GLY -1 SER 0 HIS IN CHAINS A,E,F REMARK 999 DEINOCOCCUS RADIODURANS ISDRA2 TRANPOSON INTERNAL SEQUENCE DBREF 2XMA A 1 140 UNP O83028 O83028_DEIRA 1 140 DBREF 2XMA B 1 140 UNP O83028 O83028_DEIRA 1 140 DBREF 2XMA E 1 140 UNP O83028 O83028_DEIRA 1 140 DBREF 2XMA F 1 140 UNP O83028 O83028_DEIRA 1 140 DBREF 2XMA C 11 44 PDB 2XMA 2XMA 11 44 DBREF 2XMA D 11 44 PDB 2XMA 2XMA 11 44 DBREF 2XMA G 11 44 PDB 2XMA 2XMA 11 44 DBREF 2XMA H 11 44 PDB 2XMA 2XMA 11 44 SEQADV 2XMA GLY A -2 UNP O83028 EXPRESSION TAG SEQADV 2XMA SER A -1 UNP O83028 EXPRESSION TAG SEQADV 2XMA HIS A 0 UNP O83028 EXPRESSION TAG SEQADV 2XMA GLY B -2 UNP O83028 EXPRESSION TAG SEQADV 2XMA SER B -1 UNP O83028 EXPRESSION TAG SEQADV 2XMA HIS B 0 UNP O83028 EXPRESSION TAG SEQADV 2XMA GLY E -2 UNP O83028 EXPRESSION TAG SEQADV 2XMA SER E -1 UNP O83028 EXPRESSION TAG SEQADV 2XMA HIS E 0 UNP O83028 EXPRESSION TAG SEQADV 2XMA GLY F -2 UNP O83028 EXPRESSION TAG SEQADV 2XMA SER F -1 UNP O83028 EXPRESSION TAG SEQADV 2XMA HIS F 0 UNP O83028 EXPRESSION TAG SEQRES 1 A 143 GLY SER HIS MET THR TYR VAL ILE LEU PRO LEU GLU MET SEQRES 2 A 143 LYS LYS GLY ARG GLY TYR VAL TYR GLN LEU GLU TYR HIS SEQRES 3 A 143 LEU ILE TRP CYS VAL LYS TYR ARG HIS GLN VAL LEU VAL SEQRES 4 A 143 GLY GLU VAL ALA ASP GLY LEU LYS ASP ILE LEU ARG ASP SEQRES 5 A 143 ILE ALA ALA GLN ASN GLY LEU GLU VAL ILE THR MET GLU SEQRES 6 A 143 VAL MET PRO ASP HIS VAL HIS LEU LEU LEU SER ALA THR SEQRES 7 A 143 PRO GLN GLN ALA ILE PRO ASP PHE VAL LYS ALA LEU LYS SEQRES 8 A 143 GLY ALA SER ALA ARG ARG MET PHE VAL ALA TYR PRO GLN SEQRES 9 A 143 LEU LYS GLU LYS LEU TRP GLY GLY ASN LEU TRP ASN PRO SEQRES 10 A 143 SER TYR CYS ILE LEU THR VAL SER GLU ASN THR ARG ALA SEQRES 11 A 143 GLN ILE GLN LYS TYR ILE GLU SER GLN HIS ASP LYS GLU SEQRES 1 B 143 GLY SER HIS MET THR TYR VAL ILE LEU PRO LEU GLU MET SEQRES 2 B 143 LYS LYS GLY ARG GLY TYR VAL TYR GLN LEU GLU TYR HIS SEQRES 3 B 143 LEU ILE TRP CYS VAL LYS TYR ARG HIS GLN VAL LEU VAL SEQRES 4 B 143 GLY GLU VAL ALA ASP GLY LEU LYS ASP ILE LEU ARG ASP SEQRES 5 B 143 ILE ALA ALA GLN ASN GLY LEU GLU VAL ILE THR MET GLU SEQRES 6 B 143 VAL MET PRO ASP HIS VAL HIS LEU LEU LEU SER ALA THR SEQRES 7 B 143 PRO GLN GLN ALA ILE PRO ASP PHE VAL LYS ALA LEU LYS SEQRES 8 B 143 GLY ALA SER ALA ARG ARG MET PHE VAL ALA TYR PRO GLN SEQRES 9 B 143 LEU LYS GLU LYS LEU TRP GLY GLY ASN LEU TRP ASN PRO SEQRES 10 B 143 SER TYR CYS ILE LEU THR VAL SER GLU ASN THR ARG ALA SEQRES 11 B 143 GLN ILE GLN LYS TYR ILE GLU SER GLN HIS ASP LYS GLU SEQRES 1 C 34 DG DA DG DA DA DT DC DA DC DG DC DG DA SEQRES 2 C 34 DC DT DT DT DA DG DT DC DG DT DG DT DG SEQRES 3 C 34 DA DG DG DT DT DC DA DA SEQRES 1 D 34 DG DA DG DA DA DT DC DA DC DG DC DG DA SEQRES 2 D 34 DC DT DT DT DA DG DT DC DG DT DG DT DG SEQRES 3 D 34 DA DG DG DT DT DC DA DA SEQRES 1 E 143 GLY SER HIS MET THR TYR VAL ILE LEU PRO LEU GLU MET SEQRES 2 E 143 LYS LYS GLY ARG GLY TYR VAL TYR GLN LEU GLU TYR HIS SEQRES 3 E 143 LEU ILE TRP CYS VAL LYS TYR ARG HIS GLN VAL LEU VAL SEQRES 4 E 143 GLY GLU VAL ALA ASP GLY LEU LYS ASP ILE LEU ARG ASP SEQRES 5 E 143 ILE ALA ALA GLN ASN GLY LEU GLU VAL ILE THR MET GLU SEQRES 6 E 143 VAL MET PRO ASP HIS VAL HIS LEU LEU LEU SER ALA THR SEQRES 7 E 143 PRO GLN GLN ALA ILE PRO ASP PHE VAL LYS ALA LEU LYS SEQRES 8 E 143 GLY ALA SER ALA ARG ARG MET PHE VAL ALA TYR PRO GLN SEQRES 9 E 143 LEU LYS GLU LYS LEU TRP GLY GLY ASN LEU TRP ASN PRO SEQRES 10 E 143 SER TYR CYS ILE LEU THR VAL SER GLU ASN THR ARG ALA SEQRES 11 E 143 GLN ILE GLN LYS TYR ILE GLU SER GLN HIS ASP LYS GLU SEQRES 1 F 143 GLY SER HIS MET THR TYR VAL ILE LEU PRO LEU GLU MET SEQRES 2 F 143 LYS LYS GLY ARG GLY TYR VAL TYR GLN LEU GLU TYR HIS SEQRES 3 F 143 LEU ILE TRP CYS VAL LYS TYR ARG HIS GLN VAL LEU VAL SEQRES 4 F 143 GLY GLU VAL ALA ASP GLY LEU LYS ASP ILE LEU ARG ASP SEQRES 5 F 143 ILE ALA ALA GLN ASN GLY LEU GLU VAL ILE THR MET GLU SEQRES 6 F 143 VAL MET PRO ASP HIS VAL HIS LEU LEU LEU SER ALA THR SEQRES 7 F 143 PRO GLN GLN ALA ILE PRO ASP PHE VAL LYS ALA LEU LYS SEQRES 8 F 143 GLY ALA SER ALA ARG ARG MET PHE VAL ALA TYR PRO GLN SEQRES 9 F 143 LEU LYS GLU LYS LEU TRP GLY GLY ASN LEU TRP ASN PRO SEQRES 10 F 143 SER TYR CYS ILE LEU THR VAL SER GLU ASN THR ARG ALA SEQRES 11 F 143 GLN ILE GLN LYS TYR ILE GLU SER GLN HIS ASP LYS GLU SEQRES 1 G 34 DG DA DG DA DA DT DC DA DC DG DC DG DA SEQRES 2 G 34 DC DT DT DT DA DG DT DC DG DT DG DT DG SEQRES 3 G 34 DA DG DG DT DT DC DA DA SEQRES 1 H 34 DG DA DG DA DA DT DC DA DC DG DC DG DA SEQRES 2 H 34 DC DT DT DT DA DG DT DC DG DT DG DT DG SEQRES 3 H 34 DA DG DG DT DT DC DA DA HET MG C1045 1 HET MG D1045 1 HET MG E1139 1 HET MG H1045 1 HETNAM MG MAGNESIUM ION FORMUL 9 MG 4(MG 2+) FORMUL 13 HOH *229(H2 O) HELIX 1 1 LYS A 29 HIS A 32 5 4 HELIX 2 2 VAL A 36 ASN A 54 1 19 HELIX 3 3 ALA A 79 TYR A 99 1 21 HELIX 4 4 PRO A 100 LYS A 105 5 6 HELIX 5 5 THR A 125 GLN A 136 1 12 HELIX 6 6 LYS B 29 HIS B 32 5 4 HELIX 7 7 VAL B 36 ASN B 54 1 19 HELIX 8 8 ALA B 79 TYR B 99 1 21 HELIX 9 9 PRO B 100 LYS B 105 5 6 HELIX 10 10 THR B 125 GLN B 136 1 12 HELIX 11 11 LYS E 29 HIS E 32 5 4 HELIX 12 12 GLY E 37 ASN E 54 1 18 HELIX 13 13 ALA E 79 TYR E 99 1 21 HELIX 14 14 PRO E 100 LYS E 105 5 6 HELIX 15 15 THR E 125 SER E 135 1 11 HELIX 16 16 TYR F 30 HIS F 32 5 3 HELIX 17 17 VAL F 36 ASN F 54 1 19 HELIX 18 18 ALA F 79 TYR F 99 1 21 HELIX 19 19 PRO F 100 LYS F 105 5 6 HELIX 20 20 THR F 125 SER F 135 1 11 SHEET 1 AA 6 GLU A 57 MET A 64 0 SHEET 2 AA 6 HIS A 67 ALA A 74 -1 O HIS A 67 N MET A 64 SHEET 3 AA 6 TYR A 16 CYS A 27 1 O LEU A 20 N ALA A 74 SHEET 4 AA 6 SER A -1 LYS A 12 -1 O LYS A 11 N TYR A 18 SHEET 5 AA 6 SER F -1 GLY F 13 -1 O HIS F 0 N MET A 10 SHEET 6 AA 6 TYR F 16 VAL F 28 -1 O TYR F 16 N GLY F 13 SHEET 1 AB 2 GLU A 57 MET A 64 0 SHEET 2 AB 2 TYR B 16 CYS B 27 -1 O GLU B 21 N VAL B 121 LINK O PRO A 114 MG MG C1045 1555 1555 2.20 LINK O HOH A2004 MG MG D1045 1555 1555 2.08 LINK O HOH A2038 MG MG C1045 1555 1555 2.09 LINK O PRO B 114 MG MG D1045 1555 1555 2.17 LINK OP2 DC C 31 MG MG C1045 1555 1555 2.16 LINK MG MG C1045 O HOH C2022 1555 1555 2.08 LINK MG MG C1045 O HOH C2026 1555 1555 2.07 LINK MG MG C1045 O HOH C2027 1555 1555 2.07 LINK OP2 DC D 31 MG MG D1045 1555 1555 2.23 LINK MG MG D1045 O HOH D2014 1555 1555 2.07 LINK MG MG D1045 O HOH D2016 1555 1555 2.08 LINK MG MG D1045 O HOH D2018 1555 1555 2.06 LINK O PRO E 114 MG MG E1139 1555 1555 2.19 LINK MG MG E1139 O HOH E2021 1555 1555 2.07 LINK MG MG E1139 OP2 DC G 31 1555 1555 2.35 LINK MG MG E1139 O HOH G2006 1555 1555 2.08 LINK MG MG E1139 O HOH G2009 1555 1555 2.07 LINK MG MG E1139 O HOH G2010 1555 1555 2.07 LINK O PRO F 114 MG MG H1045 1555 1555 2.18 LINK OP2 DC H 31 MG MG H1045 1555 1555 2.29 LINK MG MG H1045 O HOH H2006 1555 1555 2.08 LINK MG MG H1045 O HOH H2007 1555 1555 2.07 LINK MG MG H1045 O HOH H2008 1555 1555 2.07 LINK MG MG H1045 O HOH H2009 1555 1555 2.07 SITE 1 AC1 6 PRO A 114 HOH A2038 DC C 31 HOH C2022 SITE 2 AC1 6 HOH C2026 HOH C2027 SITE 1 AC2 6 HOH A2004 PRO B 114 DC D 31 HOH D2014 SITE 2 AC2 6 HOH D2016 HOH D2018 SITE 1 AC3 6 PRO E 114 HOH E2021 DC G 31 HOH G2006 SITE 2 AC3 6 HOH G2009 HOH G2010 SITE 1 AC4 6 PRO F 114 DC H 31 HOH H2006 HOH H2007 SITE 2 AC4 6 HOH H2008 HOH H2009 CRYST1 76.827 89.288 90.104 90.00 111.23 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013016 0.000000 0.005057 0.00000 SCALE2 0.000000 0.011200 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011906 0.00000 MTRIX1 1 -0.580052 -0.376478 -0.722361 26.54240 1 MTRIX2 1 -0.399438 -0.641396 0.655027 2.63030 1 MTRIX3 1 -0.709922 0.668488 0.221663 14.20160 1 MTRIX1 2 -0.996574 0.039401 0.072719 4.67560 1 MTRIX2 2 -0.022909 0.713337 -0.700447 20.36830 1 MTRIX3 2 -0.079471 -0.699713 -0.709990 49.80230 1 MTRIX1 3 0.643202 0.224422 0.732069 -19.82020 1 MTRIX2 3 0.362830 -0.931260 -0.033301 19.89290 1 MTRIX3 3 0.674273 0.287036 -0.680416 35.79880 1 MTRIX1 4 -0.567727 -0.373218 -0.733754 26.62690 1 MTRIX2 4 -0.413100 -0.641815 0.646082 2.65080 1 MTRIX3 4 -0.712063 0.669912 0.210199 14.29990 1 MTRIX1 5 -0.713754 -0.247609 -0.655168 24.97160 1 MTRIX2 5 -0.151779 -0.858515 0.489812 7.62970 1 MTRIX3 5 -0.683754 0.449046 0.575186 7.81990 1