HEADER HYDROLASE 28-JUL-10 2XMI TITLE CATALYTIC DOMAIN OF MOUSE 2',3'-CYCLIC NUCLEOTIDE 3'- TITLE 2 PHOSPHODIESTERASE, COMPLEXED WITH CITRATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2', 3'-CYCLIC-NUCLEOTIDE 3'-PHOSPHODIESTERASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CATALYTIC DOMAIN, RESIDUES 159-378; COMPND 5 SYNONYM: CNPASE, CNP; COMPND 6 EC: 3.1.4.37; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ROSETTA; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PTH 27 KEYWDS HYDROLASE, MYELIN EXPDTA X-RAY DIFFRACTION AUTHOR M.MYLLYKOSKI,P.KURSULA REVDAT 3 20-DEC-23 2XMI 1 REMARK REVDAT 2 21-MAR-12 2XMI 1 JRNL REMARK REVDAT 1 10-AUG-11 2XMI 0 JRNL AUTH M.MYLLYKOSKI,A.RAASAKKA,H.HAN,P.KURSULA JRNL TITL MYELIN 2',3'-CYCLIC NUCLEOTIDE 3'-PHOSPHODIESTERASE: JRNL TITL 2 ACTIVE-SITE LIGAND BINDING AND MOLECULAR CONFORMATION. JRNL REF PLOS ONE V. 7 32336 2012 JRNL REFN ESSN 1932-6203 JRNL PMID 22393399 JRNL DOI 10.1371/JOURNAL.PONE.0032336 REMARK 2 REMARK 2 RESOLUTION. 1.74 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.74 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.86 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.010 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 22280 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1114 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.8676 - 3.4791 1.00 2812 148 0.1685 0.1838 REMARK 3 2 3.4791 - 2.7619 1.00 2676 141 0.1658 0.2034 REMARK 3 3 2.7619 - 2.4129 1.00 2660 140 0.1797 0.2101 REMARK 3 4 2.4129 - 2.1924 1.00 2607 137 0.1674 0.1988 REMARK 3 5 2.1924 - 2.0352 1.00 2631 139 0.1696 0.2109 REMARK 3 6 2.0352 - 1.9153 1.00 2600 137 0.1886 0.2480 REMARK 3 7 1.9153 - 1.8193 1.00 2603 137 0.2373 0.2809 REMARK 3 8 1.8193 - 1.7402 1.00 2577 135 0.2792 0.3431 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.72 REMARK 3 K_SOL : 0.39 REMARK 3 B_SOL : 48.09 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.530 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 6.93950 REMARK 3 B22 (A**2) : -6.36240 REMARK 3 B33 (A**2) : -0.57710 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 1734 REMARK 3 ANGLE : 0.938 2334 REMARK 3 CHIRALITY : 0.067 251 REMARK 3 PLANARITY : 0.004 297 REMARK 3 DIHEDRAL : 12.324 645 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 160:175) REMARK 3 ORIGIN FOR THE GROUP (A): -10.9183 -15.3416 30.3659 REMARK 3 T TENSOR REMARK 3 T11: 0.1027 T22: 0.1472 REMARK 3 T33: 0.1299 T12: 0.0328 REMARK 3 T13: 0.0266 T23: 0.0308 REMARK 3 L TENSOR REMARK 3 L11: 1.8203 L22: 0.3847 REMARK 3 L33: 0.6971 L12: -0.4362 REMARK 3 L13: -1.1353 L23: 0.2689 REMARK 3 S TENSOR REMARK 3 S11: -0.2731 S12: -0.1492 S13: -0.1970 REMARK 3 S21: 0.1901 S22: 0.1180 S23: -0.0062 REMARK 3 S31: 0.3005 S32: 0.2005 S33: 0.0918 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 176:205) REMARK 3 ORIGIN FOR THE GROUP (A): 8.9464 -2.1253 9.7751 REMARK 3 T TENSOR REMARK 3 T11: 0.3054 T22: 0.2354 REMARK 3 T33: 0.1848 T12: -0.0989 REMARK 3 T13: 0.1498 T23: -0.0393 REMARK 3 L TENSOR REMARK 3 L11: 2.3172 L22: 1.4600 REMARK 3 L33: 0.9283 L12: 0.4574 REMARK 3 L13: -0.2684 L23: 0.8052 REMARK 3 S TENSOR REMARK 3 S11: -0.1375 S12: 0.1986 S13: -0.1041 REMARK 3 S21: -0.6822 S22: 0.1690 S23: -0.4542 REMARK 3 S31: -0.0989 S32: 0.3561 S33: -0.0850 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 206:213) REMARK 3 ORIGIN FOR THE GROUP (A): 11.0494 14.3737 13.1913 REMARK 3 T TENSOR REMARK 3 T11: 0.9006 T22: 0.3145 REMARK 3 T33: 0.6553 T12: -0.0162 REMARK 3 T13: 0.2281 T23: -0.0907 REMARK 3 L TENSOR REMARK 3 L11: 3.3747 L22: 1.4967 REMARK 3 L33: 0.9372 L12: 0.3081 REMARK 3 L13: -0.2808 L23: -1.1826 REMARK 3 S TENSOR REMARK 3 S11: 0.0887 S12: -0.2688 S13: 0.9744 REMARK 3 S21: -1.2626 S22: 0.3130 S23: 0.4318 REMARK 3 S31: -1.2413 S32: -0.0733 S33: -0.3146 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 214:244) REMARK 3 ORIGIN FOR THE GROUP (A): -2.2555 -4.9000 23.0158 REMARK 3 T TENSOR REMARK 3 T11: 0.1125 T22: 0.1497 REMARK 3 T33: 0.1037 T12: -0.0154 REMARK 3 T13: -0.0116 T23: -0.0086 REMARK 3 L TENSOR REMARK 3 L11: 0.2823 L22: 1.6034 REMARK 3 L33: 0.3402 L12: 0.0831 REMARK 3 L13: -0.0683 L23: 0.0348 REMARK 3 S TENSOR REMARK 3 S11: -0.0917 S12: 0.0644 S13: -0.0893 REMARK 3 S21: -0.1826 S22: 0.0684 S23: 0.0383 REMARK 3 S31: -0.0795 S32: -0.0183 S33: 0.0031 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 245:290) REMARK 3 ORIGIN FOR THE GROUP (A): -11.1368 -15.1635 17.1667 REMARK 3 T TENSOR REMARK 3 T11: 0.1208 T22: 0.1224 REMARK 3 T33: 0.1193 T12: -0.0381 REMARK 3 T13: -0.0527 T23: -0.0026 REMARK 3 L TENSOR REMARK 3 L11: 1.5136 L22: 4.5250 REMARK 3 L33: 0.5951 L12: 1.1949 REMARK 3 L13: -0.1208 L23: -0.1368 REMARK 3 S TENSOR REMARK 3 S11: -0.2015 S12: 0.1771 S13: 0.0460 REMARK 3 S21: -0.6100 S22: 0.2182 S23: 0.4635 REMARK 3 S31: 0.1336 S32: -0.1178 S33: -0.0323 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 291:298) REMARK 3 ORIGIN FOR THE GROUP (A): -21.1852 -3.0114 16.9205 REMARK 3 T TENSOR REMARK 3 T11: 0.3730 T22: 0.4500 REMARK 3 T33: 0.6881 T12: -0.0528 REMARK 3 T13: -0.1814 T23: -0.0705 REMARK 3 L TENSOR REMARK 3 L11: 0.3405 L22: 2.9092 REMARK 3 L33: 5.4841 L12: -0.9274 REMARK 3 L13: 0.9625 L23: -3.6813 REMARK 3 S TENSOR REMARK 3 S11: 0.8442 S12: 0.0131 S13: -0.2482 REMARK 3 S21: -0.2431 S22: 0.1855 S23: 0.9729 REMARK 3 S31: 0.1229 S32: 0.6199 S33: -0.8266 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 299:338) REMARK 3 ORIGIN FOR THE GROUP (A): -8.1070 -1.7520 12.5060 REMARK 3 T TENSOR REMARK 3 T11: 0.1851 T22: 0.1011 REMARK 3 T33: 0.1264 T12: -0.0444 REMARK 3 T13: -0.0577 T23: 0.0329 REMARK 3 L TENSOR REMARK 3 L11: 1.6052 L22: 2.7122 REMARK 3 L33: 0.5975 L12: 1.2387 REMARK 3 L13: -0.7207 L23: -0.2596 REMARK 3 S TENSOR REMARK 3 S11: -0.1401 S12: 0.0453 S13: 0.1896 REMARK 3 S21: -0.5302 S22: 0.2728 S23: 0.1814 REMARK 3 S31: -0.0252 S32: -0.0010 S33: -0.0678 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 339:378) REMARK 3 ORIGIN FOR THE GROUP (A): -0.0021 -8.1713 8.0155 REMARK 3 T TENSOR REMARK 3 T11: 0.4174 T22: 0.1866 REMARK 3 T33: 0.0901 T12: -0.0720 REMARK 3 T13: 0.0585 T23: -0.0525 REMARK 3 L TENSOR REMARK 3 L11: 1.2227 L22: 3.5022 REMARK 3 L33: 0.3278 L12: 0.4181 REMARK 3 L13: -0.0807 L23: 0.1819 REMARK 3 S TENSOR REMARK 3 S11: -0.2740 S12: 0.2954 S13: -0.1335 REMARK 3 S21: -1.2109 S22: 0.2842 S23: -0.1651 REMARK 3 S31: 0.1013 S32: -0.0900 S33: 0.0256 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2XMI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-JUL-10. REMARK 100 THE DEPOSITION ID IS D_1290044813. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-NOV-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 3.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22280 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.740 REMARK 200 RESOLUTION RANGE LOW (A) : 35.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.950 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.6800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.74 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 6.09 REMARK 200 R MERGE FOR SHELL (I) : 0.94000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.080 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1WOJ REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 3.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.81000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.55000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.55500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.55000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.81000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 23.55500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 158 REMARK 465 GLY A 159 REMARK 465 GLU A 210 REMARK 465 PRO A 211 REMARK 465 LYS A 212 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 233 -63.60 -99.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FLC A 1379 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1380 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2Y1P RELATED DB: PDB REMARK 900 CATALYTIC DOMAIN OF MOUSE 2',3'-CYCLIC NUCLEOTIDE 3'- REMARK 900 PHOSPHODIESTERASE, COMPLEXED WITH CITRATE REMARK 900 RELATED ID: 2Y3X RELATED DB: PDB REMARK 900 CATALYTIC DOMAIN OF MOUSE 2',3'-CYCLIC NUCLEOTIDE 3'- REMARK 900 PHOSPHODIESTERASE, COMPLEXED WITH SULFATE REMARK 900 RELATED ID: 2YDB RELATED DB: PDB REMARK 900 CATALYTIC DOMAIN OF MOUSE 2',3'-CYCLIC NUCLEOTIDE 3'- REMARK 900 PHOSPHODIESTERASE, SOAKED WITH 2',3'-CYCLIC NADP REMARK 900 RELATED ID: 2YDC RELATED DB: PDB REMARK 900 CATALYTIC DOMAIN OF MOUSE 2',3'-CYCLIC NUCLEOTIDE 3'- REMARK 900 PHOSPHODIESTERASE, SOAKED WITH GTP REMARK 900 RELATED ID: 2YDD RELATED DB: PDB REMARK 900 CATALYTIC DOMAIN OF MOUSE 2',3'-CYCLIC NUCLEOTIDE 3'- REMARK 900 PHOSPHODIESTERASE, SOAKED WITH 2',3'-CYCLIC AMP DBREF 2XMI A 159 378 UNP P16330 CN37_MOUSE 159 378 SEQADV 2XMI GLY A 158 UNP P16330 EXPRESSION TAG SEQRES 1 A 221 GLY GLY LEU GLU LYS ASP PHE LEU PRO LEU TYR PHE GLY SEQRES 2 A 221 TRP PHE LEU THR LYS LYS SER SER GLU THR LEU ARG LYS SEQRES 3 A 221 ALA GLY GLN VAL PHE LEU GLU GLU LEU GLY ASN HIS LYS SEQRES 4 A 221 ALA PHE LYS LYS GLU LEU ARG HIS PHE ILE SER GLY ASP SEQRES 5 A 221 GLU PRO LYS GLU LYS LEU GLU LEU VAL SER TYR PHE GLY SEQRES 6 A 221 LYS ARG PRO PRO GLY VAL LEU HIS CYS THR THR LYS PHE SEQRES 7 A 221 CYS ASP TYR GLY LYS ALA ALA GLY ALA GLU GLU TYR ALA SEQRES 8 A 221 GLN GLN GLU VAL VAL LYS ARG SER TYR GLY LYS ALA PHE SEQRES 9 A 221 LYS LEU SER ILE SER ALA LEU PHE VAL THR PRO LYS THR SEQRES 10 A 221 ALA GLY ALA GLN VAL VAL LEU THR ASP GLN GLU LEU GLN SEQRES 11 A 221 LEU TRP PRO SER ASP LEU ASP LYS PRO SER ALA SER GLU SEQRES 12 A 221 GLY LEU PRO PRO GLY SER ARG ALA HIS VAL THR LEU GLY SEQRES 13 A 221 CYS ALA ALA ASP VAL GLN PRO VAL GLN THR GLY LEU ASP SEQRES 14 A 221 LEU LEU ASP ILE LEU GLN GLN VAL LYS GLY GLY SER GLN SEQRES 15 A 221 GLY GLU ALA VAL GLY GLU LEU PRO ARG GLY LYS LEU TYR SEQRES 16 A 221 SER LEU GLY LYS GLY ARG TRP MET LEU SER LEU THR LYS SEQRES 17 A 221 LYS MET GLU VAL LYS ALA ILE PHE THR GLY TYR TYR GLY HET FLC A1379 13 HET GOL A1380 6 HETNAM FLC CITRATE ANION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 FLC C6 H5 O7 3- FORMUL 3 GOL C3 H8 O3 FORMUL 4 HOH *162(H2 O) HELIX 1 1 THR A 174 HIS A 195 1 22 HELIX 2 2 HIS A 195 GLU A 201 1 7 HELIX 3 3 GLU A 201 ILE A 206 1 6 HELIX 4 4 GLU A 216 PHE A 221 1 6 HELIX 5 5 ASP A 237 LYS A 240 5 4 HELIX 6 6 GLY A 243 GLN A 249 1 7 HELIX 7 7 GLN A 250 TYR A 257 1 8 HELIX 8 8 THR A 282 GLN A 287 1 6 HELIX 9 9 PRO A 296 GLU A 300 5 5 HELIX 10 10 VAL A 321 GLY A 336 1 16 SHEET 1 AA 5 HIS A 230 PHE A 235 0 SHEET 2 AA 5 TYR A 168 LEU A 173 -1 O PHE A 169 N THR A 233 SHEET 3 AA 5 ARG A 358 TYR A 376 -1 O ILE A 372 N PHE A 172 SHEET 4 AA 5 GLY A 349 GLY A 355 -1 O LYS A 350 N SER A 362 SHEET 5 AA 5 GLY A 344 LEU A 346 1 O GLY A 344 N LEU A 351 SHEET 1 AB 6 HIS A 230 PHE A 235 0 SHEET 2 AB 6 TYR A 168 LEU A 173 -1 O PHE A 169 N THR A 233 SHEET 3 AB 6 ARG A 358 TYR A 376 -1 O ILE A 372 N PHE A 172 SHEET 4 AB 6 ALA A 260 VAL A 270 -1 O PHE A 261 N ALA A 371 SHEET 5 AB 6 THR A 274 VAL A 280 -1 O GLY A 276 N PHE A 269 SHEET 6 AB 6 HIS A 309 CYS A 314 -1 O VAL A 310 N ALA A 277 SITE 1 AC1 14 TYR A 168 HIS A 230 THR A 232 PHE A 235 SITE 2 AC1 14 HIS A 309 PRO A 320 VAL A 321 HOH A2052 SITE 3 AC1 14 HOH A2129 HOH A2159 HOH A2160 HOH A2161 SITE 4 AC1 14 HOH A2162 HOH A2163 SITE 1 AC2 7 SER A 219 LYS A 254 TYR A 257 ASP A 294 SITE 2 AC2 7 HOH A2038 HOH A2066 HOH A2164 CRYST1 41.620 47.110 107.100 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024027 0.000000 0.000000 0.00000 SCALE2 0.000000 0.021227 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009337 0.00000