HEADER TRANSPORT 30-JUL-10 2XN5 TITLE CRYSTAL STRUCTURE OF THYROXINE-BINDING GLOBULIN COMPLEXED WITH TITLE 2 FUROSEMIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: THYROXINE-BINDING GLOBULIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 32-380; COMPND 5 SYNONYM: T4-BINDING GLOBULIN, SERPIN A7; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 OTHER_DETAILS: RESIDUES 346-355 OF TBG WERE REPLACED BY GAMFLEAIPRS; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: THYROXINE-BINDING GLOBULIN; COMPND 11 CHAIN: B; COMPND 12 FRAGMENT: RESIDUES 381-415; COMPND 13 SYNONYM: T4-BINDING GLOBULIN, SERPIN A7; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PSUMO3; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_VECTOR: PSUMO3 KEYWDS TRANSPORT, CLEAVED PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR X.QI,Y.YAN,Z.WEI,A.ZHOU REVDAT 4 20-DEC-23 2XN5 1 REMARK LINK REVDAT 3 11-MAY-11 2XN5 1 JRNL REVDAT 2 16-MAR-11 2XN5 1 JRNL REMARK HETSYN REVDAT 1 16-FEB-11 2XN5 0 JRNL AUTH X.QI,F.LOISEAU,W.L.CHAN,Y.YAN,Z.WEI,L.G.MILROY,R.M.MYERS, JRNL AUTH 2 S.V.LEY,R.J.READ,R.W.CARRELL,A.ZHOU JRNL TITL ALLOSTERIC MODULATION OF HORMONE RELEASE FROM THYROXINE AND JRNL TITL 2 CORTICOSTEROID BINDING-GLOBULINS. JRNL REF J.BIOL.CHEM. V. 286 16163 2011 JRNL REFN ISSN 0021-9258 JRNL PMID 21325280 JRNL DOI 10.1074/JBC.M110.171082 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 86.44 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 92.0 REMARK 3 NUMBER OF REFLECTIONS : 40382 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2166 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1956 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 61.23 REMARK 3 BIN R VALUE (WORKING SET) : 0.3270 REMARK 3 BIN FREE R VALUE SET COUNT : 103 REMARK 3 BIN FREE R VALUE : 0.3520 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2951 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 41 REMARK 3 SOLVENT ATOMS : 273 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 10.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.80000 REMARK 3 B22 (A**2) : 2.43000 REMARK 3 B33 (A**2) : -0.63000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.127 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.118 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.079 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.181 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.928 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3115 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2081 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4224 ; 1.104 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5131 ; 0.791 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 393 ; 5.975 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 129 ;37.660 ;25.349 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 557 ;11.707 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ; 8.598 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 483 ; 0.067 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3436 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 598 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1921 ; 0.461 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 769 ; 0.100 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3122 ; 0.869 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1194 ; 1.419 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1098 ; 2.259 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 17 A 355 REMARK 3 ORIGIN FOR THE GROUP (A): -24.2219 -8.9764 5.2317 REMARK 3 T TENSOR REMARK 3 T11: 0.0277 T22: 0.0126 REMARK 3 T33: 0.0167 T12: -0.0005 REMARK 3 T13: -0.0113 T23: 0.0028 REMARK 3 L TENSOR REMARK 3 L11: 0.9000 L22: 0.4767 REMARK 3 L33: 1.1815 L12: -0.1508 REMARK 3 L13: -0.5274 L23: 0.0176 REMARK 3 S TENSOR REMARK 3 S11: -0.0011 S12: -0.0030 S13: 0.0081 REMARK 3 S21: 0.0279 S22: 0.0128 S23: 0.0112 REMARK 3 S31: -0.0252 S32: -0.1004 S33: -0.0117 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 362 B 398 REMARK 3 ORIGIN FOR THE GROUP (A): -15.7703 -11.0705 -5.9541 REMARK 3 T TENSOR REMARK 3 T11: 0.0403 T22: 0.0054 REMARK 3 T33: 0.0380 T12: 0.0138 REMARK 3 T13: 0.0004 T23: 0.0006 REMARK 3 L TENSOR REMARK 3 L11: 0.7407 L22: 0.7330 REMARK 3 L33: 3.2378 L12: 0.2270 REMARK 3 L13: -0.5775 L23: 0.1565 REMARK 3 S TENSOR REMARK 3 S11: 0.0849 S12: 0.0286 S13: -0.0402 REMARK 3 S21: -0.0185 S22: 0.0132 S23: -0.0448 REMARK 3 S31: 0.0330 S32: 0.0230 S33: -0.0981 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2XN5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-JUL-10. REMARK 100 THE DEPOSITION ID IS D_1290044907. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.998 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40382 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 34.580 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.6 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.19000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 4.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 71.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.55000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2RIV REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG3350, PH 5.4 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 86.44000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 21.07500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 86.44000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 21.07500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -62.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2201 LIES ON A SPECIAL POSITION. REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, ALA 366 TO GLY REMARK 400 ENGINEERED RESIDUE IN CHAIN A, VAL 367 TO ALA REMARK 400 ENGINEERED RESIDUE IN CHAIN A, PRO 368 TO MET REMARK 400 ENGINEERED RESIDUE IN CHAIN A, GLU 369 TO PHE REMARK 400 ENGINEERED RESIDUE IN CHAIN A, VAL 370 TO LEU REMARK 400 ENGINEERED RESIDUE IN CHAIN A, GLU 371 TO GLU REMARK 400 ENGINEERED RESIDUE IN CHAIN A, LEU 372 TO ALA REMARK 400 ENGINEERED RESIDUE IN CHAIN A, SER 373 TO ILE REMARK 400 ENGINEERED RESIDUE IN CHAIN A, ASP 374 TO PRO REMARK 400 ENGINEERED RESIDUE IN CHAIN A, GLN 375 TO ARG REMARK 400 ENGINEERED RESIDUE IN CHAIN A, PRO 376 TO SER REMARK 400 ENGINEERED RESIDUE IN CHAIN A, GLU 377 TO ILE REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 12 REMARK 465 SER A 13 REMARK 465 GLN A 14 REMARK 465 ILE A 357 REMARK 465 PRO A 358 REMARK 465 ASN A 359 REMARK 465 THR A 360 REMARK 465 PHE A 361 REMARK 465 LEU B 361 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 104 CG CD CE NZ REMARK 470 SER A 356 CA C O CB OG REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ASN A 128 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 66 -135.11 49.10 REMARK 500 GLU A 105 29.22 49.95 REMARK 500 LYS A 121 68.43 -117.50 REMARK 500 TYR A 134 29.23 -141.93 REMARK 500 ASN A 145 78.64 -107.42 REMARK 500 ASN A 145 76.27 -105.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2008 DISTANCE = 6.00 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1358 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 220 OE1 REMARK 620 2 GLU A 222 OE1 173.3 REMARK 620 3 GLU A 222 OE1 95.6 85.2 REMARK 620 4 HOH A2160 O 76.9 109.8 86.3 REMARK 620 5 HOH A2161 O 104.4 79.3 135.9 61.4 REMARK 620 6 HOH A2162 O 83.6 91.3 135.6 135.5 86.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FUN A 1356 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1357 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1358 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1359 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1360 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1361 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1362 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1363 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1364 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2CEO RELATED DB: PDB REMARK 900 THYROXINE-BINDING GLOBULIN COMPLEX WITH THYROXINE REMARK 900 RELATED ID: 2XN3 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THYROXINE-BINDING GLOBULIN COMPLEXED WITH REMARK 900 MEFENAMIC ACID REMARK 900 RELATED ID: 2XN7 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THYROXINE-BINDING GLOBULIN COMPLEXED WITH REMARK 900 THYROXINE-FLUORESEIN (T405-CF) REMARK 900 RELATED ID: 2XN6 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THYROXINE-BINDING GLOBULIN COMPLEXED WITH REMARK 900 THYROXINE-FLUORESEIN REMARK 900 RELATED ID: 2RIW RELATED DB: PDB REMARK 900 THE REACTIVE LOOP CLEAVED HUMAN THYROXINE BINDING GLOBULIN REMARK 900 COMPLEXED WITH THYROXINE REMARK 900 RELATED ID: 2RIV RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE REACTIVE LOOP CLEAVED HUMAN THYROXINE REMARK 900 BINDING GLOBULIN DBREF 2XN5 A 12 361 UNP P05543 THBG_HUMAN 32 380 DBREF 2XN5 B 361 395 UNP P05543 THBG_HUMAN 381 415 SEQADV 2XN5 GLY A 346 UNP P05543 ALA 366 ENGINEERED MUTATION SEQADV 2XN5 ALA A 347 UNP P05543 VAL 367 ENGINEERED MUTATION SEQADV 2XN5 MET A 348 UNP P05543 PRO 368 ENGINEERED MUTATION SEQADV 2XN5 PHE A 349 UNP P05543 GLU 369 ENGINEERED MUTATION SEQADV 2XN5 LEU A 350 UNP P05543 VAL 370 ENGINEERED MUTATION SEQADV 2XN5 GLU A 351 UNP P05543 GLU 371 ENGINEERED MUTATION SEQADV 2XN5 ALA A 352 UNP P05543 LEU 372 ENGINEERED MUTATION SEQADV 2XN5 ILE A 353 UNP P05543 SER 373 ENGINEERED MUTATION SEQADV 2XN5 PRO A 354 UNP P05543 ASP 374 ENGINEERED MUTATION SEQADV 2XN5 ARG A 355 UNP P05543 GLN 375 ENGINEERED MUTATION SEQADV 2XN5 SER A 356 UNP P05543 PRO 376 ENGINEERED MUTATION SEQADV 2XN5 ILE A 357 UNP P05543 GLU 377 ENGINEERED MUTATION SEQADV 2XN5 PRO A 358 UNP P05543 INSERTION SEQRES 1 A 350 SER SER GLN PRO ASN ALA THR LEU TYR LYS MET SER SER SEQRES 2 A 350 ILE ASN ALA ASP PHE ALA PHE ASN LEU TYR ARG ARG PHE SEQRES 3 A 350 THR VAL GLU THR PRO ASP LYS ASN ILE PHE PHE SER PRO SEQRES 4 A 350 VAL SER ILE SER ALA ALA LEU VAL MET LEU SER PHE GLY SEQRES 5 A 350 ALA CYS CYS SER THR GLN THR GLU ILE VAL GLU THR LEU SEQRES 6 A 350 GLY PHE ASN LEU THR ASP THR PRO MET VAL GLU ILE GLN SEQRES 7 A 350 HIS GLY PHE GLN HIS LEU ILE CYS SER LEU ASN PHE PRO SEQRES 8 A 350 LYS LYS GLU LEU GLU LEU GLN ILE GLY ASN ALA LEU PHE SEQRES 9 A 350 ILE GLY LYS HIS LEU LYS PRO LEU ALA LYS PHE LEU ASN SEQRES 10 A 350 ASP VAL LYS THR LEU TYR GLU THR GLU VAL PHE SER THR SEQRES 11 A 350 ASP PHE SER ASN ILE SER ALA ALA LYS GLN GLU ILE ASN SEQRES 12 A 350 SER HIS VAL GLU MET GLN THR LYS GLY LYS VAL VAL GLY SEQRES 13 A 350 LEU ILE GLN ASP LEU LYS PRO ASN THR ILE MET VAL LEU SEQRES 14 A 350 VAL ASN TYR ILE HIS PHE LYS ALA GLN TRP ALA ASN PRO SEQRES 15 A 350 PHE ASP PRO SER LYS THR GLU ASP SER SER SER PHE LEU SEQRES 16 A 350 ILE ASP LYS THR THR THR VAL GLN VAL PRO MET MET HIS SEQRES 17 A 350 GLN MET GLU GLN TYR TYR HIS LEU VAL ASP MET GLU LEU SEQRES 18 A 350 ASN CYS THR VAL LEU GLN MET ASP TYR SER LYS ASN ALA SEQRES 19 A 350 LEU ALA LEU PHE VAL LEU PRO LYS GLU GLY GLN MET GLU SEQRES 20 A 350 SER VAL GLU ALA ALA MET SER SER LYS THR LEU LYS LYS SEQRES 21 A 350 TRP ASN ARG LEU LEU GLN LYS GLY TRP VAL ASP LEU PHE SEQRES 22 A 350 VAL PRO LYS PHE SER ILE SER ALA THR TYR ASP LEU GLY SEQRES 23 A 350 ALA THR LEU LEU LYS MET GLY ILE GLN HIS ALA TYR SER SEQRES 24 A 350 GLU ASN ALA ASP PHE SER GLY LEU THR GLU ASP ASN GLY SEQRES 25 A 350 LEU LYS LEU SER ASN ALA ALA HIS LYS ALA VAL LEU HIS SEQRES 26 A 350 ILE GLY GLU LYS GLY THR GLU ALA ALA GLY ALA MET PHE SEQRES 27 A 350 LEU GLU ALA ILE PRO ARG SER ILE PRO ASN THR PHE SEQRES 1 B 35 LEU HIS PRO ILE ILE GLN ILE ASP ARG SER PHE MET LEU SEQRES 2 B 35 LEU ILE LEU GLU ARG SER THR ARG SER ILE LEU PHE LEU SEQRES 3 B 35 GLY LYS VAL VAL ASN PRO THR GLU ALA HET FUN A1356 21 HET CA A1357 1 HET CA A1358 1 HET EDO A1359 4 HET EDO A1360 4 HET EDO A1361 4 HET CA A1362 1 HET EDO A1363 4 HET CA A1364 1 HETNAM FUN 5-(AMINOSULFONYL)-4-CHLORO-2-[(2-FURYLMETHYL) HETNAM 2 FUN AMINO]BENZOIC ACID HETNAM CA CALCIUM ION HETNAM EDO 1,2-ETHANEDIOL HETSYN FUN FUROSEMIDE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 FUN C12 H11 CL N2 O5 S FORMUL 4 CA 4(CA 2+) FORMUL 6 EDO 4(C2 H6 O2) FORMUL 12 HOH *273(H2 O) HELIX 1 1 PRO A 15 THR A 41 1 27 HELIX 2 2 SER A 49 GLY A 63 1 15 HELIX 3 3 CYS A 65 LEU A 76 1 12 HELIX 4 4 PRO A 84 PHE A 101 1 18 HELIX 5 5 LEU A 123 TYR A 134 1 12 HELIX 6 6 ASN A 145 THR A 161 1 17 HELIX 7 7 ASP A 195 THR A 199 5 5 HELIX 8 8 GLN A 256 MET A 264 1 9 HELIX 9 9 SER A 265 LEU A 276 1 12 HELIX 10 10 LEU A 296 GLY A 304 1 9 HELIX 11 11 GLN A 306 SER A 310 5 5 SHEET 1 AA 8 ILE A 46 PHE A 48 0 SHEET 2 AA 8 SER B 382 VAL B 389 -1 O LEU B 386 N PHE A 48 SHEET 3 AA 8 PHE B 371 GLU B 377 -1 O PHE B 371 N VAL B 389 SHEET 4 AA 8 ALA A 245 PRO A 252 -1 O LEU A 246 N LEU B 376 SHEET 5 AA 8 CYS A 234 ASP A 240 -1 O THR A 235 N LEU A 251 SHEET 6 AA 8 THR A 211 ASP A 229 -1 O TYR A 225 N GLN A 238 SHEET 7 AA 8 GLN A 277 PRO A 286 1 O GLN A 277 N HIS A 226 SHEET 8 AA 8 ILE B 364 GLN B 366 -1 O ILE B 365 N PHE A 284 SHEET 1 AB 7 ILE A 46 PHE A 48 0 SHEET 2 AB 7 SER B 382 VAL B 389 -1 O LEU B 386 N PHE A 48 SHEET 3 AB 7 PHE B 371 GLU B 377 -1 O PHE B 371 N VAL B 389 SHEET 4 AB 7 ALA A 245 PRO A 252 -1 O LEU A 246 N LEU B 376 SHEET 5 AB 7 CYS A 234 ASP A 240 -1 O THR A 235 N LEU A 251 SHEET 6 AB 7 THR A 211 ASP A 229 -1 O TYR A 225 N GLN A 238 SHEET 7 AB 7 GLU A 200 ASP A 208 -1 O GLU A 200 N MET A 217 SHEET 1 AC 6 THR A 136 THR A 141 0 SHEET 2 AC 6 LEU A 106 GLY A 117 1 O ASN A 112 N GLU A 137 SHEET 3 AC 6 MET A 178 GLN A 189 -1 O VAL A 179 N PHE A 115 SHEET 4 AC 6 GLY A 341 PRO A 354 -1 O THR A 342 N ALA A 188 SHEET 5 AC 6 LEU A 324 ILE A 337 -1 O LYS A 325 N ILE A 353 SHEET 6 AC 6 PHE A 288 ASP A 295 -1 O PHE A 288 N ILE A 337 LINK OE1 GLN A 220 CA CA A1358 2555 1555 2.50 LINK OE1 GLU A 222 CA CA A1358 1555 1555 2.46 LINK OE1 GLU A 222 CA CA A1358 2555 1555 2.37 LINK CA CA A1358 O HOH A2160 1555 2555 2.81 LINK CA CA A1358 O HOH A2161 1555 1555 2.51 LINK CA CA A1358 O HOH A2162 1555 1555 2.59 SITE 1 AC1 15 SER A 23 SER A 24 ALA A 27 GLN A 238 SITE 2 AC1 15 LEU A 246 SER A 266 LEU A 269 LYS A 270 SITE 3 AC1 15 ASN A 273 LEU A 276 HOH A2005 HOH A2255 SITE 4 AC1 15 HOH A2256 HOH A2257 ARG B 381 SITE 1 AC2 1 THR A 268 SITE 1 AC3 6 ASN A 192 GLN A 220 GLU A 222 HOH A2160 SITE 2 AC3 6 HOH A2161 HOH A2162 SITE 1 AC4 8 LYS A 287 HIS A 336 GLY A 338 GLU A 339 SITE 2 AC4 8 LYS A 340 GLY A 341 EDO A1363 HOH A2249 SITE 1 AC5 7 GLU A 40 ILE A 146 LYS A 150 ASP A 171 SITE 2 AC5 7 LEU A 172 HOH A2124 HOH A2258 SITE 1 AC6 3 GLN A 238 ASN A 273 ARG B 378 SITE 1 AC7 2 SER A 204 ASP B 368 SITE 1 AC8 6 ALA A 188 GLN A 189 HIS A 336 THR A 342 SITE 2 AC8 6 GLU A 343 EDO A1359 SITE 1 AC9 2 ALA A 262 ALA A 263 CRYST1 172.880 42.150 56.190 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005784 0.000000 0.000000 0.00000 SCALE2 0.000000 0.023725 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017797 0.00000