data_2XNF # _entry.id 2XNF # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2XNF PDBE EBI-44928 WWPDB D_1290044928 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2XNF _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2010-08-02 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Vojnic, E.' 1 'Mourao, A.' 2 'Seizl, M.' 3 'Simon, B.' 4 'Wenzeck, L.' 5 'Lariviere, L.' 6 'Baumli, S.' 7 'Meisterernst, M.' 8 'Sattler, M.' 9 'Cramer, P.' 10 # _citation.id primary _citation.title 'Structure and Vp16 Binding of the Mediator Med25 Activator Interaction Domain.' _citation.journal_abbrev Nat.Struct.Mol.Biol. _citation.journal_volume 18 _citation.page_first 404 _citation.page_last ? _citation.year 2011 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1545-9993 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21378965 _citation.pdbx_database_id_DOI 10.1038/NSMB.1997 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Vojnic, E.' 1 primary 'Mourao, A.' 2 primary 'Seizl, M.' 3 primary 'Simon, B.' 4 primary 'Wenzeck, L.' 5 primary 'Lariviere, L.' 6 primary 'Baumli, S.' 7 primary 'Baumgart, K.' 8 primary 'Meisterernst, M.' 9 primary 'Sattler, M.' 10 primary 'Cramer, P.' 11 # _cell.entry_id 2XNF _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2XNF _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 25' _entity.formula_weight 18284.301 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'MED25 ACID DOMAIN, RESIDUES 394-543' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name ;MEDIATOR COMPLEX SUBUNIT 25, ACTIVATOR-RECRUITED COFACTOR 92 KDA COMPONENT, ARC92, ACTIVATOR INTERACTION DOMAIN-CONTAINING PROTEIN 1, P78, MED25 ; # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MSVSNKLLAWSGVLEWQEKPKPASVDANTKLTRSLPCQVYVNHGENLKTEQWPQKLIMQLIPQQLLTTLGPLFRNSRMVQ FHFTNKDLESLKGLYRIMGNGFAGCVHFPHTAPCEVRVLMLLYSSKKKIFMGLIPYDQSGFVNGIRQVITNLEHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;MSVSNKLLAWSGVLEWQEKPKPASVDANTKLTRSLPCQVYVNHGENLKTEQWPQKLIMQLIPQQLLTTLGPLFRNSRMVQ FHFTNKDLESLKGLYRIMGNGFAGCVHFPHTAPCEVRVLMLLYSSKKKIFMGLIPYDQSGFVNGIRQVITNLEHHHHHH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 SER n 1 3 VAL n 1 4 SER n 1 5 ASN n 1 6 LYS n 1 7 LEU n 1 8 LEU n 1 9 ALA n 1 10 TRP n 1 11 SER n 1 12 GLY n 1 13 VAL n 1 14 LEU n 1 15 GLU n 1 16 TRP n 1 17 GLN n 1 18 GLU n 1 19 LYS n 1 20 PRO n 1 21 LYS n 1 22 PRO n 1 23 ALA n 1 24 SER n 1 25 VAL n 1 26 ASP n 1 27 ALA n 1 28 ASN n 1 29 THR n 1 30 LYS n 1 31 LEU n 1 32 THR n 1 33 ARG n 1 34 SER n 1 35 LEU n 1 36 PRO n 1 37 CYS n 1 38 GLN n 1 39 VAL n 1 40 TYR n 1 41 VAL n 1 42 ASN n 1 43 HIS n 1 44 GLY n 1 45 GLU n 1 46 ASN n 1 47 LEU n 1 48 LYS n 1 49 THR n 1 50 GLU n 1 51 GLN n 1 52 TRP n 1 53 PRO n 1 54 GLN n 1 55 LYS n 1 56 LEU n 1 57 ILE n 1 58 MET n 1 59 GLN n 1 60 LEU n 1 61 ILE n 1 62 PRO n 1 63 GLN n 1 64 GLN n 1 65 LEU n 1 66 LEU n 1 67 THR n 1 68 THR n 1 69 LEU n 1 70 GLY n 1 71 PRO n 1 72 LEU n 1 73 PHE n 1 74 ARG n 1 75 ASN n 1 76 SER n 1 77 ARG n 1 78 MET n 1 79 VAL n 1 80 GLN n 1 81 PHE n 1 82 HIS n 1 83 PHE n 1 84 THR n 1 85 ASN n 1 86 LYS n 1 87 ASP n 1 88 LEU n 1 89 GLU n 1 90 SER n 1 91 LEU n 1 92 LYS n 1 93 GLY n 1 94 LEU n 1 95 TYR n 1 96 ARG n 1 97 ILE n 1 98 MET n 1 99 GLY n 1 100 ASN n 1 101 GLY n 1 102 PHE n 1 103 ALA n 1 104 GLY n 1 105 CYS n 1 106 VAL n 1 107 HIS n 1 108 PHE n 1 109 PRO n 1 110 HIS n 1 111 THR n 1 112 ALA n 1 113 PRO n 1 114 CYS n 1 115 GLU n 1 116 VAL n 1 117 ARG n 1 118 VAL n 1 119 LEU n 1 120 MET n 1 121 LEU n 1 122 LEU n 1 123 TYR n 1 124 SER n 1 125 SER n 1 126 LYS n 1 127 LYS n 1 128 LYS n 1 129 ILE n 1 130 PHE n 1 131 MET n 1 132 GLY n 1 133 LEU n 1 134 ILE n 1 135 PRO n 1 136 TYR n 1 137 ASP n 1 138 GLN n 1 139 SER n 1 140 GLY n 1 141 PHE n 1 142 VAL n 1 143 ASN n 1 144 GLY n 1 145 ILE n 1 146 ARG n 1 147 GLN n 1 148 VAL n 1 149 ILE n 1 150 THR n 1 151 ASN n 1 152 LEU n 1 153 GLU n 1 154 HIS n 1 155 HIS n 1 156 HIS n 1 157 HIS n 1 158 HIS n 1 159 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name HUMAN _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'HOMO SAPIENS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code MED25_HUMAN _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession Q71SY5 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2XNF _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 151 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q71SY5 _struct_ref_seq.db_align_beg 394 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 543 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 394 _struct_ref_seq.pdbx_auth_seq_align_end 543 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2XNF MET A 1 ? UNP Q71SY5 ? ? 'expression tag' 393 1 1 2XNF LEU A 152 ? UNP Q71SY5 ? ? 'expression tag' 544 2 1 2XNF GLU A 153 ? UNP Q71SY5 ? ? 'expression tag' 545 3 1 2XNF HIS A 154 ? UNP Q71SY5 ? ? 'expression tag' 546 4 1 2XNF HIS A 155 ? UNP Q71SY5 ? ? 'expression tag' 547 5 1 2XNF HIS A 156 ? UNP Q71SY5 ? ? 'expression tag' 548 6 1 2XNF HIS A 157 ? UNP Q71SY5 ? ? 'expression tag' 549 7 1 2XNF HIS A 158 ? UNP Q71SY5 ? ? 'expression tag' 550 8 1 2XNF HIS A 159 ? UNP Q71SY5 ? ? 'expression tag' 551 9 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 NOESY 1 2 2 HSQC 1 3 3 HNCA 1 4 4 HNCACB 1 5 5 CBCACONH 1 6 6 HCCH-TOCSY 1 # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.ionic_strength_units _pdbx_nmr_exptl_sample_conditions.pH_units _pdbx_nmr_exptl_sample_conditions.temperature_units 1 295.0 atm 1.0 6.5 100 ? pH K 2 295.0 atm 1.0 6.5 100 mM pH K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '90%WATER/10% D2O' # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength 1 Avance Bruker 900 2 DMX Bruker 600 # _pdbx_nmr_refine.entry_id 2XNF _pdbx_nmr_refine.method CYANA _pdbx_nmr_refine.details WATER-REFINED _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_details.entry_id 2XNF _pdbx_nmr_details.text 'THE STRUCTURE WAS DETERMINED USING MULTIDIMENSIONAL NMR SPECTROSCOPY ON 13C, 15N-LABELED MED25 ACID DOMAIN' # _pdbx_nmr_ensemble.entry_id 2XNF _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria ENERGY # _pdbx_nmr_representative.entry_id 2XNF _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria ? # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal refinement CNS ? 'BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU,READ, RICE, SIMONSON,WARREN' 1 'structure solution' NMRVIEW ? ? 2 # _exptl.entry_id 2XNF _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2XNF _struct.title 'The Mediator Med25 activator interaction domain: Structure and cooperative binding of VP16 subdomains' _struct.pdbx_descriptor 'MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 25' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2XNF _struct_keywords.pdbx_keywords TRANSCRIPTION _struct_keywords.text 'TRANSCRIPTION, ACTIVATED TRANSCRIPTION, MEDIATOR' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LYS A 48 ? TRP A 52 ? LYS A 440 TRP A 444 5 ? 5 HELX_P HELX_P2 2 GLN A 63 ? THR A 67 ? GLN A 455 THR A 459 1 ? 5 HELX_P HELX_P3 3 THR A 68 ? ARG A 74 ? THR A 460 ARG A 466 5 ? 7 HELX_P HELX_P4 4 ASP A 87 ? ASN A 100 ? ASP A 479 ASN A 492 1 ? 14 HELX_P HELX_P5 5 ASP A 137 ? HIS A 156 ? ASP A 529 HIS A 548 1 ? 20 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id AA _struct_sheet.type ? _struct_sheet.number_strands 8 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? anti-parallel AA 3 4 ? anti-parallel AA 4 5 ? anti-parallel AA 5 6 ? anti-parallel AA 6 7 ? anti-parallel AA 7 8 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 LEU A 7 ? GLN A 17 ? LEU A 399 GLN A 409 AA 2 THR A 32 ? ASN A 42 ? THR A 424 ASN A 434 AA 3 SER A 76 ? PHE A 83 ? SER A 468 PHE A 475 AA 4 ILE A 129 ? PRO A 135 ? ILE A 521 PRO A 527 AA 5 VAL A 118 ? SER A 124 ? VAL A 510 SER A 516 AA 6 PHE A 102 ? HIS A 107 ? PHE A 494 HIS A 499 AA 7 LYS A 55 ? PRO A 62 ? LYS A 447 PRO A 454 AA 8 LEU A 7 ? GLN A 17 ? LEU A 399 GLN A 409 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N TRP A 16 ? N TRP A 408 O ARG A 33 ? O ARG A 425 AA 2 3 N ASN A 42 ? N ASN A 434 O MET A 78 ? O MET A 470 AA 3 4 N PHE A 81 ? N PHE A 473 O PHE A 130 ? O PHE A 522 AA 4 5 O PRO A 135 ? O PRO A 527 N VAL A 118 ? N VAL A 510 AA 5 6 N LEU A 121 ? N LEU A 513 O GLY A 104 ? O GLY A 496 AA 6 7 N HIS A 107 ? N HIS A 499 O ILE A 57 ? O ILE A 449 AA 7 8 N LEU A 56 ? N LEU A 448 O VAL A 13 ? O VAL A 405 # _database_PDB_matrix.entry_id 2XNF _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2XNF _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 393 393 MET MET A . n A 1 2 SER 2 394 394 SER SER A . n A 1 3 VAL 3 395 395 VAL VAL A . n A 1 4 SER 4 396 396 SER SER A . n A 1 5 ASN 5 397 397 ASN ASN A . n A 1 6 LYS 6 398 398 LYS LYS A . n A 1 7 LEU 7 399 399 LEU LEU A . n A 1 8 LEU 8 400 400 LEU LEU A . n A 1 9 ALA 9 401 401 ALA ALA A . n A 1 10 TRP 10 402 402 TRP TRP A . n A 1 11 SER 11 403 403 SER SER A . n A 1 12 GLY 12 404 404 GLY GLY A . n A 1 13 VAL 13 405 405 VAL VAL A . n A 1 14 LEU 14 406 406 LEU LEU A . n A 1 15 GLU 15 407 407 GLU GLU A . n A 1 16 TRP 16 408 408 TRP TRP A . n A 1 17 GLN 17 409 409 GLN GLN A . n A 1 18 GLU 18 410 410 GLU GLU A . n A 1 19 LYS 19 411 411 LYS LYS A . n A 1 20 PRO 20 412 412 PRO PRO A . n A 1 21 LYS 21 413 413 LYS LYS A . n A 1 22 PRO 22 414 414 PRO PRO A . n A 1 23 ALA 23 415 415 ALA ALA A . n A 1 24 SER 24 416 416 SER SER A . n A 1 25 VAL 25 417 417 VAL VAL A . n A 1 26 ASP 26 418 418 ASP ASP A . n A 1 27 ALA 27 419 419 ALA ALA A . n A 1 28 ASN 28 420 420 ASN ASN A . n A 1 29 THR 29 421 421 THR THR A . n A 1 30 LYS 30 422 422 LYS LYS A . n A 1 31 LEU 31 423 423 LEU LEU A . n A 1 32 THR 32 424 424 THR THR A . n A 1 33 ARG 33 425 425 ARG ARG A . n A 1 34 SER 34 426 426 SER SER A . n A 1 35 LEU 35 427 427 LEU LEU A . n A 1 36 PRO 36 428 428 PRO PRO A . n A 1 37 CYS 37 429 429 CYS CYS A . n A 1 38 GLN 38 430 430 GLN GLN A . n A 1 39 VAL 39 431 431 VAL VAL A . n A 1 40 TYR 40 432 432 TYR TYR A . n A 1 41 VAL 41 433 433 VAL VAL A . n A 1 42 ASN 42 434 434 ASN ASN A . n A 1 43 HIS 43 435 435 HIS HIS A . n A 1 44 GLY 44 436 436 GLY GLY A . n A 1 45 GLU 45 437 437 GLU GLU A . n A 1 46 ASN 46 438 438 ASN ASN A . n A 1 47 LEU 47 439 439 LEU LEU A . n A 1 48 LYS 48 440 440 LYS LYS A . n A 1 49 THR 49 441 441 THR THR A . n A 1 50 GLU 50 442 442 GLU GLU A . n A 1 51 GLN 51 443 443 GLN GLN A . n A 1 52 TRP 52 444 444 TRP TRP A . n A 1 53 PRO 53 445 445 PRO PRO A . n A 1 54 GLN 54 446 446 GLN GLN A . n A 1 55 LYS 55 447 447 LYS LYS A . n A 1 56 LEU 56 448 448 LEU LEU A . n A 1 57 ILE 57 449 449 ILE ILE A . n A 1 58 MET 58 450 450 MET MET A . n A 1 59 GLN 59 451 451 GLN GLN A . n A 1 60 LEU 60 452 452 LEU LEU A . n A 1 61 ILE 61 453 453 ILE ILE A . n A 1 62 PRO 62 454 454 PRO PRO A . n A 1 63 GLN 63 455 455 GLN GLN A . n A 1 64 GLN 64 456 456 GLN GLN A . n A 1 65 LEU 65 457 457 LEU LEU A . n A 1 66 LEU 66 458 458 LEU LEU A . n A 1 67 THR 67 459 459 THR THR A . n A 1 68 THR 68 460 460 THR THR A . n A 1 69 LEU 69 461 461 LEU LEU A . n A 1 70 GLY 70 462 462 GLY GLY A . n A 1 71 PRO 71 463 463 PRO PRO A . n A 1 72 LEU 72 464 464 LEU LEU A . n A 1 73 PHE 73 465 465 PHE PHE A . n A 1 74 ARG 74 466 466 ARG ARG A . n A 1 75 ASN 75 467 467 ASN ASN A . n A 1 76 SER 76 468 468 SER SER A . n A 1 77 ARG 77 469 469 ARG ARG A . n A 1 78 MET 78 470 470 MET MET A . n A 1 79 VAL 79 471 471 VAL VAL A . n A 1 80 GLN 80 472 472 GLN GLN A . n A 1 81 PHE 81 473 473 PHE PHE A . n A 1 82 HIS 82 474 474 HIS HIS A . n A 1 83 PHE 83 475 475 PHE PHE A . n A 1 84 THR 84 476 476 THR THR A . n A 1 85 ASN 85 477 477 ASN ASN A . n A 1 86 LYS 86 478 478 LYS LYS A . n A 1 87 ASP 87 479 479 ASP ASP A . n A 1 88 LEU 88 480 480 LEU LEU A . n A 1 89 GLU 89 481 481 GLU GLU A . n A 1 90 SER 90 482 482 SER SER A . n A 1 91 LEU 91 483 483 LEU LEU A . n A 1 92 LYS 92 484 484 LYS LYS A . n A 1 93 GLY 93 485 485 GLY GLY A . n A 1 94 LEU 94 486 486 LEU LEU A . n A 1 95 TYR 95 487 487 TYR TYR A . n A 1 96 ARG 96 488 488 ARG ARG A . n A 1 97 ILE 97 489 489 ILE ILE A . n A 1 98 MET 98 490 490 MET MET A . n A 1 99 GLY 99 491 491 GLY GLY A . n A 1 100 ASN 100 492 492 ASN ASN A . n A 1 101 GLY 101 493 493 GLY GLY A . n A 1 102 PHE 102 494 494 PHE PHE A . n A 1 103 ALA 103 495 495 ALA ALA A . n A 1 104 GLY 104 496 496 GLY GLY A . n A 1 105 CYS 105 497 497 CYS CYS A . n A 1 106 VAL 106 498 498 VAL VAL A . n A 1 107 HIS 107 499 499 HIS HIS A . n A 1 108 PHE 108 500 500 PHE PHE A . n A 1 109 PRO 109 501 501 PRO PRO A . n A 1 110 HIS 110 502 502 HIS HIS A . n A 1 111 THR 111 503 503 THR THR A . n A 1 112 ALA 112 504 504 ALA ALA A . n A 1 113 PRO 113 505 505 PRO PRO A . n A 1 114 CYS 114 506 506 CYS CYS A . n A 1 115 GLU 115 507 507 GLU GLU A . n A 1 116 VAL 116 508 508 VAL VAL A . n A 1 117 ARG 117 509 509 ARG ARG A . n A 1 118 VAL 118 510 510 VAL VAL A . n A 1 119 LEU 119 511 511 LEU LEU A . n A 1 120 MET 120 512 512 MET MET A . n A 1 121 LEU 121 513 513 LEU LEU A . n A 1 122 LEU 122 514 514 LEU LEU A . n A 1 123 TYR 123 515 515 TYR TYR A . n A 1 124 SER 124 516 516 SER SER A . n A 1 125 SER 125 517 517 SER SER A . n A 1 126 LYS 126 518 518 LYS LYS A . n A 1 127 LYS 127 519 519 LYS LYS A . n A 1 128 LYS 128 520 520 LYS LYS A . n A 1 129 ILE 129 521 521 ILE ILE A . n A 1 130 PHE 130 522 522 PHE PHE A . n A 1 131 MET 131 523 523 MET MET A . n A 1 132 GLY 132 524 524 GLY GLY A . n A 1 133 LEU 133 525 525 LEU LEU A . n A 1 134 ILE 134 526 526 ILE ILE A . n A 1 135 PRO 135 527 527 PRO PRO A . n A 1 136 TYR 136 528 528 TYR TYR A . n A 1 137 ASP 137 529 529 ASP ASP A . n A 1 138 GLN 138 530 530 GLN GLN A . n A 1 139 SER 139 531 531 SER SER A . n A 1 140 GLY 140 532 532 GLY GLY A . n A 1 141 PHE 141 533 533 PHE PHE A . n A 1 142 VAL 142 534 534 VAL VAL A . n A 1 143 ASN 143 535 535 ASN ASN A . n A 1 144 GLY 144 536 536 GLY GLY A . n A 1 145 ILE 145 537 537 ILE ILE A . n A 1 146 ARG 146 538 538 ARG ARG A . n A 1 147 GLN 147 539 539 GLN GLN A . n A 1 148 VAL 148 540 540 VAL VAL A . n A 1 149 ILE 149 541 541 ILE ILE A . n A 1 150 THR 150 542 542 THR THR A . n A 1 151 ASN 151 543 543 ASN ASN A . n A 1 152 LEU 152 544 544 LEU LEU A . n A 1 153 GLU 153 545 545 GLU GLU A . n A 1 154 HIS 154 546 546 HIS HIS A . n A 1 155 HIS 155 547 547 HIS HIS A . n A 1 156 HIS 156 548 548 HIS HIS A . n A 1 157 HIS 157 549 549 HIS HIS A . n A 1 158 HIS 158 550 550 HIS HIS A . n A 1 159 HIS 159 551 551 HIS HIS A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-03-09 2 'Structure model' 1 1 2011-05-08 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' # _pdbx_database_remark.id 700 _pdbx_database_remark.text ; SHEET DETERMINATION METHOD: DSSP THE SHEETS PRESENTED AS "AA" IN EACH CHAIN ON SHEET RECORDS BELOW IS ACTUALLY AN 7-STRANDED BARREL THIS IS REPRESENTED BY A 8-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS ARE IDENTICAL. ; # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 4 HZ2 A LYS 411 ? ? OE1 A GLU 545 ? ? 1.57 2 6 OD2 A ASP 479 ? ? HG A SER 482 ? ? 1.55 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 C _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 ASN _pdbx_validate_rmsd_bond.auth_seq_id_1 434 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 O _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 ASN _pdbx_validate_rmsd_bond.auth_seq_id_2 434 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.359 _pdbx_validate_rmsd_bond.bond_target_value 1.229 _pdbx_validate_rmsd_bond.bond_deviation 0.130 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.019 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 394 ? ? 68.74 -50.87 2 1 SER A 396 ? ? -141.62 -15.23 3 1 SER A 416 ? ? 71.16 -49.58 4 1 LYS A 422 ? ? 57.20 -175.88 5 1 HIS A 435 ? ? -38.43 148.10 6 1 ASN A 477 ? ? -66.84 78.55 7 1 THR A 503 ? ? -158.49 -38.58 8 1 CYS A 506 ? ? -104.29 -75.24 9 1 GLU A 507 ? ? -168.77 26.41 10 1 VAL A 508 ? ? 67.35 -97.66 11 1 HIS A 548 ? ? 51.83 86.81 12 2 ASN A 397 ? ? -130.58 -53.89 13 2 ALA A 401 ? ? -132.55 -46.00 14 2 LYS A 411 ? ? 64.43 86.67 15 2 PRO A 412 ? ? -43.69 108.23 16 2 HIS A 435 ? ? -27.56 131.51 17 2 THR A 441 ? ? -74.43 31.42 18 2 CYS A 506 ? ? -111.79 -78.42 19 2 ARG A 509 ? ? 72.69 165.47 20 2 HIS A 547 ? ? 65.63 174.73 21 2 HIS A 550 ? ? -146.69 -56.31 22 3 VAL A 395 ? ? -142.01 -32.97 23 3 THR A 421 ? ? 60.61 90.23 24 3 HIS A 435 ? ? -19.53 152.90 25 3 ASN A 477 ? ? -76.44 47.90 26 3 THR A 503 ? ? 172.32 -25.31 27 3 HIS A 548 ? ? -56.34 -74.21 28 3 HIS A 549 ? ? -144.47 -44.73 29 4 ASN A 397 ? ? 68.18 -52.30 30 4 PRO A 412 ? ? -87.94 -72.66 31 4 LYS A 413 ? ? -174.79 136.90 32 4 ASN A 420 ? ? 175.71 83.14 33 4 HIS A 435 ? ? -25.15 157.05 34 4 ASN A 438 ? ? 178.81 94.01 35 4 ASN A 477 ? ? -77.55 20.81 36 4 PRO A 501 ? ? -58.30 107.57 37 4 HIS A 547 ? ? 73.25 156.78 38 5 SER A 396 ? ? -147.58 -159.37 39 5 ASN A 397 ? ? 68.38 -156.44 40 5 LYS A 411 ? ? 44.48 82.22 41 5 ASN A 420 ? ? 65.88 -69.17 42 5 HIS A 435 ? ? -34.35 161.42 43 5 ASN A 438 ? ? -165.25 95.66 44 5 THR A 503 ? ? -134.90 -46.93 45 5 HIS A 548 ? ? 58.91 77.07 46 5 HIS A 550 ? ? 63.47 166.07 47 6 SER A 396 ? ? -98.73 30.63 48 6 GLU A 410 ? ? 166.74 -69.71 49 6 SER A 416 ? ? -156.04 -74.62 50 6 HIS A 435 ? ? -33.00 160.17 51 6 ASN A 477 ? ? -87.25 37.17 52 6 ASP A 479 ? ? -103.90 78.22 53 6 THR A 503 ? ? -130.08 -42.86 54 6 CYS A 506 ? ? -83.32 36.36 55 6 GLU A 507 ? ? 67.58 110.90 56 6 ARG A 509 ? ? 73.42 169.07 57 6 HIS A 548 ? ? -95.29 44.47 58 7 LYS A 411 ? ? 42.68 83.73 59 7 SER A 416 ? ? 68.05 -82.14 60 7 VAL A 417 ? ? -145.56 -68.28 61 7 HIS A 435 ? ? -47.53 165.05 62 7 GLU A 507 ? ? -169.91 108.35 63 7 ARG A 509 ? ? 72.82 177.08 64 7 HIS A 550 ? ? -69.29 96.90 65 8 LYS A 413 ? ? 71.09 80.27 66 8 ASN A 420 ? ? -160.99 88.43 67 8 THR A 421 ? ? -79.16 -96.05 68 8 LYS A 422 ? ? 62.67 -68.00 69 8 HIS A 435 ? ? -39.26 165.72 70 8 ASN A 438 ? ? -160.88 94.49 71 8 PRO A 501 ? ? -62.71 3.40 72 8 GLU A 507 ? ? 80.73 93.93 73 8 ARG A 509 ? ? 75.14 -178.67 74 8 HIS A 547 ? ? 54.70 84.07 75 9 SER A 394 ? ? 74.32 -62.69 76 9 VAL A 395 ? ? 64.02 95.55 77 9 LYS A 413 ? ? 164.50 140.72 78 9 HIS A 435 ? ? -37.41 153.19 79 9 ASN A 477 ? ? -80.26 38.18 80 9 PRO A 501 ? ? -65.73 92.30 81 9 VAL A 508 ? ? 75.55 97.54 82 9 HIS A 547 ? ? 68.37 -72.80 83 9 HIS A 548 ? ? 64.72 -80.43 84 10 ASN A 397 ? ? -171.29 -70.38 85 10 GLU A 410 ? ? -121.89 -89.88 86 10 SER A 416 ? ? 71.08 -46.64 87 10 HIS A 435 ? ? -63.47 -175.91 88 10 ASN A 438 ? ? -161.73 102.88 89 10 THR A 441 ? ? -83.45 38.12 90 10 THR A 476 ? ? -71.99 -74.71 91 10 THR A 503 ? ? -152.41 -45.89 92 10 CYS A 506 ? ? -178.89 -48.33 93 10 ARG A 509 ? ? 73.86 149.90 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 ARG A 538 ? ? 0.095 'SIDE CHAIN' 2 3 ARG A 425 ? ? 0.076 'SIDE CHAIN' #