HEADER ISOMERASE 02-AUG-10 2XNH TITLE STRUCTURE AND FUNCTION OF THE RAD9-BINDING REGION OF THE DNA DAMAGE TITLE 2 CHECKPOINT ADAPTOR TOPBP1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA TOPOISOMERASE 2-BINDING PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: BRCT 0,1 AND 2, RESIDUES 1-287; COMPND 5 SYNONYM: DNA TOPOISOMERASE II-BINDING PROTEIN 1, DNA TOPOISOMERASE COMPND 6 II-BETA-BINDING PROTEIN 1, TOPBP1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ROSETTA2(DE3)PLYSS; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: POPINH8, PGEX6P1 KEYWDS ISOMERASE, PHOSPHORYLATION, PROTEIN-PROTEIN INTERACTION, DNA REPAIR EXPDTA X-RAY DIFFRACTION AUTHOR M.RAPPAS,A.W.OLIVER,L.H.PEARL REVDAT 2 16-FEB-11 2XNH 1 JRNL REVDAT 1 01-SEP-10 2XNH 0 JRNL AUTH M.RAPPAS,A.W.OLIVER,L.H.PEARL JRNL TITL STRUCTURE AND FUNCTION OF THE RAD9-BINDING REGION OF THE JRNL TITL 2 DNA-DAMAGE CHECKPOINT ADAPTOR TOPBP1. JRNL REF NUCLEIC ACIDS RES. V. 39 313 2011 JRNL REFN ISSN 0305-1048 JRNL PMID 20724438 JRNL DOI 10.1093/NAR/GKQ743 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.263 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.44 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.83 REMARK 3 NUMBER OF REFLECTIONS : 24687 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.2327 REMARK 3 R VALUE (WORKING SET) : 0.2318 REMARK 3 FREE R VALUE : 0.2513 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.1 REMARK 3 FREE R VALUE TEST SET COUNT : 1254 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.2696 - 5.8219 0.99 2590 136 0.2498 0.2562 REMARK 3 2 5.8219 - 4.6223 1.00 2603 134 0.1974 0.1702 REMARK 3 3 4.6223 - 4.0384 1.00 2605 144 0.1768 0.2128 REMARK 3 4 4.0384 - 3.6693 1.00 2596 150 0.1936 0.2338 REMARK 3 5 3.6693 - 3.4064 1.00 2584 141 0.2141 0.2499 REMARK 3 6 3.4064 - 3.2056 1.00 2609 124 0.2433 0.2821 REMARK 3 7 3.2056 - 3.0451 1.00 2606 128 0.2648 0.3063 REMARK 3 8 3.0451 - 2.9125 1.00 2592 150 0.2733 0.3070 REMARK 3 9 2.9125 - 2.8004 1.00 2648 147 0.2837 0.2923 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.339 REMARK 3 B_SOL : 58.687 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 1.16 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.97 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 54.82 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.0000 REMARK 3 B22 (A**2) : 0.0000 REMARK 3 B33 (A**2) : 0.0000 REMARK 3 B12 (A**2) : 0.0000 REMARK 3 B13 (A**2) : 0.0000 REMARK 3 B23 (A**2) : -0.0000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 2330 REMARK 3 ANGLE : 0.603 3135 REMARK 3 CHIRALITY : 0.041 342 REMARK 3 PLANARITY : 0.002 395 REMARK 3 DIHEDRAL : 14.706 875 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND RESID 6:103 REMARK 3 ORIGIN FOR THE GROUP (A): 36.7922 67.4455 76.9068 REMARK 3 T TENSOR REMARK 3 T11: 0.2601 T22: 0.2027 REMARK 3 T33: 0.4865 T12: 0.0210 REMARK 3 T13: -0.1510 T23: 0.0840 REMARK 3 L TENSOR REMARK 3 L11: 1.2581 L22: 2.2667 REMARK 3 L33: 1.8348 L12: -1.4352 REMARK 3 L13: 1.3363 L23: -2.4932 REMARK 3 S TENSOR REMARK 3 S11: 0.1374 S12: -0.1004 S13: -0.4722 REMARK 3 S21: -0.1710 S22: 0.3079 S23: 0.5065 REMARK 3 S31: 0.1832 S32: -0.2714 S33: -0.3869 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND RESID 104:198 REMARK 3 ORIGIN FOR THE GROUP (A): 37.6168 89.1427 62.3073 REMARK 3 T TENSOR REMARK 3 T11: 0.2174 T22: 0.2115 REMARK 3 T33: 0.1284 T12: 0.0376 REMARK 3 T13: -0.0674 T23: -0.0568 REMARK 3 L TENSOR REMARK 3 L11: 2.0077 L22: 2.7689 REMARK 3 L33: 0.1099 L12: -2.1588 REMARK 3 L13: 0.3881 L23: -0.1528 REMARK 3 S TENSOR REMARK 3 S11: -0.0198 S12: 0.2025 S13: -0.2981 REMARK 3 S21: -0.1590 S22: 0.0630 S23: 0.1271 REMARK 3 S31: 0.0064 S32: -0.1000 S33: -0.0087 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND RESID 199:287 REMARK 3 ORIGIN FOR THE GROUP (A): 33.6415 115.5118 50.8370 REMARK 3 T TENSOR REMARK 3 T11: 0.4533 T22: 0.3267 REMARK 3 T33: 0.1830 T12: 0.1007 REMARK 3 T13: -0.0233 T23: 0.0793 REMARK 3 L TENSOR REMARK 3 L11: 0.7715 L22: 2.7296 REMARK 3 L33: 0.7123 L12: -1.8793 REMARK 3 L13: 1.2928 L23: -0.6665 REMARK 3 S TENSOR REMARK 3 S11: 0.1882 S12: 0.3153 S13: 0.0594 REMARK 3 S21: -0.7324 S22: -0.2637 S23: 0.0443 REMARK 3 S31: 0.0151 S32: -0.0527 S33: 0.0478 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2XNH COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-AUG-10. REMARK 100 THE PDBE ID CODE IS EBI-44930. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUN-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13035 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.60 REMARK 200 RESOLUTION RANGE LOW (A) : 51.77 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.93 REMARK 200 R MERGE (I) : 0.09 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.90 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.09 REMARK 200 R MERGE FOR SHELL (I) : 0.50 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.52 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 0.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS-HCL PH 6.8, 0.5M KI, REMARK 280 5% (V/V) GLYCEROL, 22.5% (W/V), 10% PEG 3350 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 57.88500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.88500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 57.88500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.88500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 57.88500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 57.88500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 57.88500 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 57.88500 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 57.88500 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 57.88500 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 57.88500 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 57.88500 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 57.88500 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 57.88500 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 57.88500 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 57.88500 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 57.88500 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 57.88500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 I IOD A1293 LIES ON A SPECIAL POSITION. REMARK 375 I IOD A1302 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 SER A 2 REMARK 465 ARG A 3 REMARK 465 ASN A 4 REMARK 465 ASP A 5 REMARK 465 LYS A 6 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 287 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C LYS A 182 O HOH A 2049 2.05 REMARK 500 N LYS A 183 O HOH A 2049 2.10 REMARK 500 OE1 GLU A 36 O HOH A 2010 2.17 REMARK 500 OE2 GLU A 36 O LEU A 39 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 182 75.25 -66.50 REMARK 500 GLU A 237 -27.81 -144.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A1288 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A1289 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A1290 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A1292 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A1293 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A1294 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A1295 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A1296 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A1299 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A1304 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1WF6 RELATED DB: PDB REMARK 900 THE THIRD BRCA1 C-TERMINUS (BRCT) DOMAIN OF SIMILAR REMARK 900 TOS.POMBE RAD4+/CUT5+ PRODUCT REMARK 900 RELATED ID: 2XNK RELATED DB: PDB REMARK 900 STRUCTURE AND FUNCTION OF THE RAD9-BINDING REMARK 900 REGION OF THE DNA DAMAGE CHECKPOINT ADAPTOR TOPBP1 DBREF 2XNH A 1 287 UNP Q92547 TOPB1_HUMAN 1 287 SEQRES 1 A 287 MSE SER ARG ASN ASP LYS GLU PRO PHE PHE VAL LYS PHE SEQRES 2 A 287 LEU LYS SER SER ASP ASN SER LYS CYS PHE PHE LYS ALA SEQRES 3 A 287 LEU GLU SER ILE LYS GLU PHE GLN SER GLU GLU TYR LEU SEQRES 4 A 287 GLN ILE ILE THR GLU GLU GLU ALA LEU LYS ILE LYS GLU SEQRES 5 A 287 ASN ASP ARG SER LEU TYR ILE CYS ASP PRO PHE SER GLY SEQRES 6 A 287 VAL VAL PHE ASP HIS LEU LYS LYS LEU GLY CYS ARG ILE SEQRES 7 A 287 VAL GLY PRO GLN VAL VAL ILE PHE CYS MSE HIS HIS GLN SEQRES 8 A 287 ARG CYS VAL PRO ARG ALA GLU HIS PRO VAL TYR ASN MSE SEQRES 9 A 287 VAL MSE SER ASP VAL THR ILE SER CYS THR SER LEU GLU SEQRES 10 A 287 LYS GLU LYS ARG GLU GLU VAL HIS LYS TYR VAL GLN MSE SEQRES 11 A 287 MSE GLY GLY ARG VAL TYR ARG ASP LEU ASN VAL SER VAL SEQRES 12 A 287 THR HIS LEU ILE ALA GLY GLU VAL GLY SER LYS LYS TYR SEQRES 13 A 287 LEU VAL ALA ALA ASN LEU LYS LYS PRO ILE LEU LEU PRO SEQRES 14 A 287 SER TRP ILE LYS THR LEU TRP GLU LYS SER GLN GLU LYS SEQRES 15 A 287 LYS ILE THR ARG TYR THR ASP ILE ASN MSE GLU ASP PHE SEQRES 16 A 287 LYS CYS PRO ILE PHE LEU GLY CYS ILE ILE CYS VAL THR SEQRES 17 A 287 GLY LEU CYS GLY LEU ASP ARG LYS GLU VAL GLN GLN LEU SEQRES 18 A 287 THR VAL LYS HIS GLY GLY GLN TYR MSE GLY GLN LEU LYS SEQRES 19 A 287 MSE ASN GLU CYS THR HIS LEU ILE VAL GLN GLU PRO LYS SEQRES 20 A 287 GLY GLN LYS TYR GLU CYS ALA LYS ARG TRP ASN VAL HIS SEQRES 21 A 287 CYS VAL THR THR GLN TRP PHE PHE ASP SER ILE GLU LYS SEQRES 22 A 287 GLY PHE CYS GLN ASP GLU SER ILE TYR LYS THR GLU PRO SEQRES 23 A 287 ARG MODRES 2XNH MSE A 88 MET SELENOMETHIONINE MODRES 2XNH MSE A 104 MET SELENOMETHIONINE MODRES 2XNH MSE A 106 MET SELENOMETHIONINE MODRES 2XNH MSE A 130 MET SELENOMETHIONINE MODRES 2XNH MSE A 131 MET SELENOMETHIONINE MODRES 2XNH MSE A 192 MET SELENOMETHIONINE MODRES 2XNH MSE A 230 MET SELENOMETHIONINE MODRES 2XNH MSE A 235 MET SELENOMETHIONINE HET MSE A 88 8 HET MSE A 104 8 HET MSE A 106 8 HET MSE A 130 8 HET MSE A 131 8 HET MSE A 192 8 HET MSE A 230 8 HET MSE A 235 8 HET IOD A1288 1 HET IOD A1289 1 HET IOD A1290 1 HET IOD A1291 1 HET IOD A1292 1 HET IOD A1293 1 HET IOD A1294 1 HET IOD A1295 1 HET IOD A1296 1 HET IOD A1297 1 HET IOD A1298 1 HET IOD A1299 1 HET IOD A1301 1 HET IOD A1302 1 HET IOD A1303 1 HET IOD A1304 1 HET IOD A1305 1 HETNAM MSE SELENOMETHIONINE HETNAM IOD IODIDE ION FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 2 IOD 17(I 1-) FORMUL 3 HOH *71(H2 O) HELIX 1 1 LYS A 21 GLU A 32 1 12 HELIX 2 2 SER A 35 GLU A 37 5 3 HELIX 3 3 GLU A 44 ILE A 50 1 7 HELIX 4 4 GLY A 65 GLY A 75 1 11 HELIX 5 5 GLY A 80 GLN A 91 1 12 HELIX 6 6 GLU A 117 MSE A 131 1 15 HELIX 7 7 SER A 153 LEU A 162 1 10 HELIX 8 8 LEU A 168 GLU A 181 1 14 HELIX 9 9 ARG A 186 ILE A 190 5 5 HELIX 10 10 ASN A 191 PHE A 195 5 5 HELIX 11 11 CYS A 211 HIS A 225 1 15 HELIX 12 12 GLY A 248 TRP A 257 1 10 HELIX 13 13 THR A 263 GLY A 274 1 12 HELIX 14 14 ASP A 278 TYR A 282 5 5 SHEET 1 AA 4 LEU A 39 THR A 43 0 SHEET 2 AA 4 VAL A 11 LYS A 15 1 O VAL A 11 N GLN A 40 SHEET 3 AA 4 LEU A 57 ILE A 59 1 O LEU A 57 N LYS A 12 SHEET 4 AA 4 ARG A 77 VAL A 79 1 O ARG A 77 N TYR A 58 SHEET 1 AB 4 ARG A 134 VAL A 135 0 SHEET 2 AB 4 THR A 110 THR A 114 1 N ILE A 111 O ARG A 134 SHEET 3 AB 4 HIS A 145 ALA A 148 1 O HIS A 145 N SER A 112 SHEET 4 AB 4 ILE A 166 LEU A 167 1 O LEU A 167 N ALA A 148 SHEET 1 AC 4 GLN A 228 TYR A 229 0 SHEET 2 AC 4 ILE A 204 VAL A 207 1 N ILE A 205 O GLN A 228 SHEET 3 AC 4 HIS A 240 ILE A 242 1 O HIS A 240 N CYS A 206 SHEET 4 AC 4 HIS A 260 VAL A 262 1 O HIS A 260 N LEU A 241 LINK C CYS A 87 N MSE A 88 1555 1555 1.33 LINK C MSE A 88 N HIS A 89 1555 1555 1.33 LINK C ASN A 103 N MSE A 104 1555 1555 1.33 LINK C MSE A 104 N VAL A 105 1555 1555 1.33 LINK C VAL A 105 N MSE A 106 1555 1555 1.32 LINK C MSE A 106 N SER A 107 1555 1555 1.32 LINK C GLN A 129 N MSE A 130 1555 1555 1.33 LINK C MSE A 130 N MSE A 131 1555 1555 1.33 LINK C MSE A 131 N GLY A 132 1555 1555 1.33 LINK C ASN A 191 N MSE A 192 1555 1555 1.33 LINK C MSE A 192 N GLU A 193 1555 1555 1.33 LINK C TYR A 229 N MSE A 230 1555 1555 1.33 LINK C MSE A 230 N GLY A 231 1555 1555 1.33 LINK C LYS A 234 N MSE A 235 1555 1555 1.33 LINK C MSE A 235 N ASN A 236 1555 1555 1.33 CISPEP 1 ASN A 19 SER A 20 0 -3.87 SITE 1 AC1 2 GLN A 129 VAL A 135 SITE 1 AC2 1 ARG A 137 SITE 1 AC3 3 CYS A 113 HIS A 125 ARG A 137 SITE 1 AC4 1 MSE A 192 SITE 1 AC5 1 ARG A 137 SITE 1 AC6 1 LYS A 72 SITE 1 AC7 1 PHE A 268 SITE 1 AC8 1 GLN A 249 SITE 1 AC9 1 LYS A 120 SITE 1 BC1 1 ARG A 92 CRYST1 115.770 115.770 115.770 90.00 90.00 90.00 P 21 3 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008638 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008638 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008638 0.00000