data_2XNZ # _entry.id 2XNZ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2XNZ pdb_00002xnz 10.2210/pdb2xnz/pdb PDBE EBI-44983 ? ? WWPDB D_1290044983 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 2XNW unspecified 'XPT-PBUX C74U RIBOSWITCH FROM B. SUBTILIS BOUND TO A TRIAZOLO-TRIAZOLE-DIAMINE LIGAND IDENTIFIED BY VIRTUAL SCREENING' PDB 2XO0 unspecified 'XPT-PBUX C74U RIBOSWITCH FROM B. SUBTILIS BOUND TO 24-DIAMINO-1,3,5-TRIAZINE IDENTIFIED BY VIRTUAL SCREENING' PDB 2XO1 unspecified 'XPT-PBUX C74U RIBOSWITCH FROM B. SUBTILIS BOUND TO N6-METHYLADENINE' PDB 2G9C unspecified 'MODIFIED PYRIMIDINES SPECIFICALLY BIND THE PURINE RIBOSWITCH' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2XNZ _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2010-08-06 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Daldrop, P.' 1 ? 'Reyes, F.E.' 2 ? 'Robinson, D.A.' 3 ? 'Hammond, C.M.' 4 ? 'Lilley, D.M.J.' 5 ? 'Batey, R.T.' 6 ? 'Brenk, R.' 7 ? # _citation.id primary _citation.title 'Novel ligands for a purine riboswitch discovered by RNA-ligand docking.' _citation.journal_abbrev 'Chem. Biol.' _citation.journal_volume 18 _citation.page_first 324 _citation.page_last 335 _citation.year 2011 _citation.journal_id_ASTM CBOLE2 _citation.country UK _citation.journal_id_ISSN 1879-1301 _citation.journal_id_CSD 2050 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21439477 _citation.pdbx_database_id_DOI 10.1016/j.chembiol.2010.12.020 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Daldrop, P.' 1 ? primary 'Reyes, F.E.' 2 ? primary 'Robinson, D.A.' 3 ? primary 'Hammond, C.M.' 4 ? primary 'Lilley, D.M.' 5 ? primary 'Batey, R.T.' 6 ? primary 'Brenk, R.' 7 ? # _cell.entry_id 2XNZ _cell.length_a 132.165 _cell.length_b 35.068 _cell.length_c 41.798 _cell.angle_alpha 90.00 _cell.angle_beta 90.06 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2XNZ _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Guanine riboswitch' 21507.768 1 ? ? 'APTAMER DOMAIN, RESIDUES 15-81' ? 2 non-polymer syn 'COBALT HEXAMMINE(III)' 161.116 6 ? ? ? ? 3 non-polymer syn 'ACETATE ION' 59.044 1 ? ? ? ? 4 non-polymer syn 6-METHYL-1,3,5-TRIAZINE-2,4-DIAMINE 125.132 1 ? ? ? ? 5 non-polymer syn 'POTASSIUM ION' 39.098 6 ? ? ? ? 6 water nat water 18.015 216 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GGACAUAUAAUCGCGUGGAUAUGGCACGCAAGUUUCUACCGGGCACCGUAAAUGUCCGAUUAUGUCC _entity_poly.pdbx_seq_one_letter_code_can GGACAUAUAAUCGCGUGGAUAUGGCACGCAAGUUUCUACCGGGCACCGUAAAUGUCCGAUUAUGUCC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 A n 1 4 C n 1 5 A n 1 6 U n 1 7 A n 1 8 U n 1 9 A n 1 10 A n 1 11 U n 1 12 C n 1 13 G n 1 14 C n 1 15 G n 1 16 U n 1 17 G n 1 18 G n 1 19 A n 1 20 U n 1 21 A n 1 22 U n 1 23 G n 1 24 G n 1 25 C n 1 26 A n 1 27 C n 1 28 G n 1 29 C n 1 30 A n 1 31 A n 1 32 G n 1 33 U n 1 34 U n 1 35 U n 1 36 C n 1 37 U n 1 38 A n 1 39 C n 1 40 C n 1 41 G n 1 42 G n 1 43 G n 1 44 C n 1 45 A n 1 46 C n 1 47 C n 1 48 G n 1 49 U n 1 50 A n 1 51 A n 1 52 A n 1 53 U n 1 54 G n 1 55 U n 1 56 C n 1 57 C n 1 58 G n 1 59 A n 1 60 U n 1 61 U n 1 62 A n 1 63 U n 1 64 G n 1 65 U n 1 66 C n 1 67 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'BACILLUS SUBTILIS' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 1423 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 2XNZ _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession 2XNZ _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2XNZ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 67 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 2XNZ _struct_ref_seq.db_align_beg 15 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 81 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 15 _struct_ref_seq.pdbx_auth_seq_align_end 81 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 3AW non-polymer . 6-METHYL-1,3,5-TRIAZINE-2,4-DIAMINE ACETOGUANAMINE 'C4 H7 N5' 125.132 A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ACT non-polymer . 'ACETATE ION' ? 'C2 H3 O2 -1' 59.044 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 NCO non-polymer . 'COBALT HEXAMMINE(III)' ? 'Co H18 N6 3' 161.116 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.entry_id 2XNZ _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.25 _exptl_crystal.density_percent_sol 45.5 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '10MM K-HEPES PH 7.5, 12MM COBALT HEXAMMINE, 800MM AMMONIUM ACETATE, 25% PEG 4000' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 210' _diffrn_detector.pdbx_collection_date 2009-11-06 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.93344 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID14-1' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID14-1 _diffrn_source.pdbx_wavelength 0.93344 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2XNZ _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 66.08 _reflns.d_resolution_high 1.60 _reflns.number_obs 25334 _reflns.number_all ? _reflns.percent_possible_obs 98.5 _reflns.pdbx_Rmerge_I_obs 0.04 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 30.2 _reflns.B_iso_Wilson_estimate 0.0 _reflns.pdbx_redundancy 3.7 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.60 _reflns_shell.d_res_low 1.66 _reflns_shell.percent_possible_all 98.1 _reflns_shell.Rmerge_I_obs 0.40 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.90 _reflns_shell.pdbx_redundancy ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2XNZ _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 23956 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 66.08 _refine.ls_d_res_high 1.59 _refine.ls_percent_reflns_obs 97.53 _refine.ls_R_factor_obs 0.19968 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.19783 _refine.ls_R_factor_R_free 0.23424 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 1280 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.959 _refine.correlation_coeff_Fo_to_Fc_free 0.948 _refine.B_iso_mean 25.438 _refine.aniso_B[1][1] 0.87 _refine.aniso_B[2][2] -0.59 _refine.aniso_B[3][3] -0.28 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.11 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. U VALUES REFINED INDIVIDUALLY. RESIDUES 15 AND 81 ARE NOT MODELLED BECAUSE UNORDERED ; _refine.pdbx_starting_model 'PDB ENTRY 2G9C' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.100 _refine.pdbx_overall_ESU_R_Free 0.101 _refine.overall_SU_ML 0.067 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 1.947 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1382 _refine_hist.pdbx_number_atoms_ligand 61 _refine_hist.number_atoms_solvent 216 _refine_hist.number_atoms_total 1659 _refine_hist.d_res_high 1.59 _refine_hist.d_res_low 66.08 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.009 0.021 ? 1589 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.546 3.000 ? 2494 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_chiral_restr 0.073 0.200 ? 325 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.009 0.020 ? 680 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.744 1.500 ? 3 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1.135 2.000 ? 2 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 1.271 3.000 ? 1586 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 1.806 4.500 ? 2492 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.594 _refine_ls_shell.d_res_low 1.636 _refine_ls_shell.number_reflns_R_work 1599 _refine_ls_shell.R_factor_R_work 0.311 _refine_ls_shell.percent_reflns_obs 91.16 _refine_ls_shell.R_factor_R_free 0.367 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 92 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 2XNZ _struct.title 'xpt-pbuX C74U Riboswitch from B. subtilis bound to acetoguanamine identified by virtual screening' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2XNZ _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'RNA, APTAMER, RNA-LIGAND COMPLEX, MRNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 3 ? I N N 4 ? J N N 5 ? K N N 5 ? L N N 5 ? M N N 5 ? N N N 5 ? O N N 5 ? P N N 6 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A G 43 OP1 ? ? ? 4_545 J K . K ? ? A G 57 A K 1089 1_555 ? ? ? ? ? ? ? 3.193 ? ? metalc2 metalc ? ? A C 44 OP2 ? ? ? 4_545 J K . K ? ? A C 58 A K 1089 1_555 ? ? ? ? ? ? ? 2.666 ? ? metalc3 metalc ? ? J K . K ? ? ? 1_555 P HOH . O ? ? A K 1089 A HOH 2142 4_545 ? ? ? ? ? ? ? 3.052 ? ? metalc4 metalc ? ? L K . K ? ? ? 1_555 P HOH . O ? ? A K 1091 A HOH 2008 4_555 ? ? ? ? ? ? ? 3.149 ? ? metalc5 metalc ? ? L K . K ? ? ? 1_555 P HOH . O ? ? A K 1091 A HOH 2079 1_555 ? ? ? ? ? ? ? 2.660 ? ? metalc6 metalc ? ? L K . K ? ? ? 1_555 P HOH . O ? ? A K 1091 A HOH 2084 1_555 ? ? ? ? ? ? ? 2.408 ? ? metalc7 metalc ? ? L K . K ? ? ? 1_555 P HOH . O ? ? A K 1091 A HOH 2091 4_555 ? ? ? ? ? ? ? 3.244 ? ? metalc8 metalc ? ? M K . K ? ? ? 1_555 P HOH . O ? ? A K 1092 A HOH 2204 1_555 ? ? ? ? ? ? ? 3.488 ? ? metalc9 metalc ? ? O K . K ? ? ? 1_555 P HOH . O ? ? A K 1094 A HOH 2166 4_556 ? ? ? ? ? ? ? 2.100 ? ? hydrog1 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 66 N3 ? ? A G 16 A C 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 66 O2 ? ? A G 16 A C 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 66 N4 ? ? A G 16 A C 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A A 3 N1 ? ? ? 1_555 A U 65 N3 ? ? A A 17 A U 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A A 3 N6 ? ? ? 1_555 A U 65 O4 ? ? A A 17 A U 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 4 N3 ? ? ? 1_555 A G 64 N1 ? ? A C 18 A G 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 4 N4 ? ? ? 1_555 A G 64 O6 ? ? A C 18 A G 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 4 O2 ? ? ? 1_555 A G 64 N2 ? ? A C 18 A G 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A A 5 N1 ? ? ? 1_555 A U 63 N3 ? ? A A 19 A U 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A A 5 N6 ? ? ? 1_555 A U 63 O4 ? ? A A 19 A U 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A U 6 N3 ? ? ? 1_555 A A 62 N1 ? ? A U 20 A A 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A U 6 O4 ? ? ? 1_555 A A 62 N6 ? ? A U 20 A A 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A A 7 N1 ? ? ? 1_555 A U 61 N3 ? ? A A 21 A U 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A A 7 N6 ? ? ? 1_555 A U 61 O4 ? ? A A 21 A U 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A U 8 N3 ? ? ? 1_555 A A 38 N1 ? ? A U 22 A A 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A U 8 O4 ? ? ? 1_555 A A 38 N6 ? ? A U 22 A A 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A A 9 N1 ? ? ? 1_555 A G 32 N2 ? ? A A 23 A G 46 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog18 hydrog ? ? A A 9 N6 ? ? ? 1_555 A G 32 N3 ? ? A A 23 A G 46 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog19 hydrog ? ? A U 11 N3 ? ? ? 1_555 A A 31 N1 ? ? A U 25 A A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A U 11 O4 ? ? ? 1_555 A A 31 N6 ? ? A U 25 A A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A C 12 N4 ? ? ? 1_555 A A 30 N1 ? ? A C 26 A A 44 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog22 hydrog ? ? A G 13 N1 ? ? ? 1_555 A C 29 N3 ? ? A G 27 A C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A G 13 N2 ? ? ? 1_555 A C 29 O2 ? ? A G 27 A C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A G 13 O6 ? ? ? 1_555 A C 29 N4 ? ? A G 27 A C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A C 14 N3 ? ? ? 1_555 A G 28 N1 ? ? A C 28 A G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A C 14 N4 ? ? ? 1_555 A G 28 O6 ? ? A C 28 A G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A C 14 O2 ? ? ? 1_555 A G 28 N2 ? ? A C 28 A G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A G 15 N1 ? ? ? 1_555 A C 27 N3 ? ? A G 29 A C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A G 15 N2 ? ? ? 1_555 A C 27 O2 ? ? A G 29 A C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A G 15 O6 ? ? ? 1_555 A C 27 N4 ? ? A G 29 A C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A U 16 N3 ? ? ? 1_555 A A 26 N1 ? ? A U 30 A A 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A U 16 O4 ? ? ? 1_555 A A 26 N6 ? ? A U 30 A A 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A G 17 N1 ? ? ? 1_555 A C 25 N3 ? ? A G 31 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A G 17 N2 ? ? ? 1_555 A C 25 O2 ? ? A G 31 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A G 17 O6 ? ? ? 1_555 A C 25 N4 ? ? A G 31 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A A 19 N1 ? ? ? 1_555 A A 52 N6 ? ? A A 33 A A 66 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog37 hydrog ? ? A A 19 N6 ? ? ? 1_555 A A 52 N7 ? ? A A 33 A A 66 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog38 hydrog ? ? A U 20 O2 ? ? ? 1_555 A G 23 N2 ? ? A U 34 A G 37 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog39 hydrog ? ? A U 20 N3 ? ? ? 1_555 A A 51 N7 ? ? A U 34 A A 65 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog40 hydrog ? ? A U 20 O2 ? ? ? 1_555 A A 51 N6 ? ? A U 34 A A 65 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog41 hydrog ? ? A A 21 N6 ? ? ? 1_555 A A 50 N1 ? ? A A 35 A A 64 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog42 hydrog ? ? A A 21 N7 ? ? ? 1_555 A A 50 N6 ? ? A A 35 A A 64 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog43 hydrog ? ? A G 23 N1 ? ? ? 1_555 A C 47 N3 ? ? A G 37 A C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A G 23 N2 ? ? ? 1_555 A C 47 O2 ? ? A G 37 A C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A G 23 O6 ? ? ? 1_555 A C 47 N4 ? ? A G 37 A C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A G 24 N1 ? ? ? 1_555 A C 46 N3 ? ? A G 38 A C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A G 24 N2 ? ? ? 1_555 A C 46 O2 ? ? A G 38 A C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A G 24 O6 ? ? ? 1_555 A C 46 N4 ? ? A G 38 A C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A G 24 N2 ? ? ? 1_555 A A 52 N1 ? ? A G 38 A A 66 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog50 hydrog ? ? A G 24 N3 ? ? ? 1_555 A A 52 N6 ? ? A G 38 A A 66 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog51 hydrog ? ? A G 32 N1 ? ? ? 1_555 A C 39 N3 ? ? A G 46 A C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A G 32 N2 ? ? ? 1_555 A C 39 O2 ? ? A G 46 A C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A G 32 O6 ? ? ? 1_555 A C 39 N4 ? ? A G 46 A C 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A U 33 N3 ? ? ? 1_555 A U 37 O4 ? ? A U 47 A U 51 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog55 hydrog ? ? A U 35 N3 ? ? ? 1_555 A A 62 N3 ? ? A U 49 A A 76 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog56 hydrog ? ? A C 36 N4 ? ? ? 1_555 A U 61 O2 ? ? A C 50 A U 75 1_555 ? ? ? ? ? ? 'C-U MISPAIR' ? ? ? hydrog57 hydrog ? ? A C 40 N3 ? ? ? 1_555 A G 58 N1 ? ? A C 54 A G 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A C 40 N4 ? ? ? 1_555 A G 58 O6 ? ? A C 54 A G 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A C 40 O2 ? ? ? 1_555 A G 58 N2 ? ? A C 54 A G 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A G 41 N1 ? ? ? 1_555 A C 57 N3 ? ? A G 55 A C 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A G 41 N2 ? ? ? 1_555 A C 57 O2 ? ? A G 55 A C 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A G 41 O6 ? ? ? 1_555 A C 57 N4 ? ? A G 55 A C 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A G 42 N1 ? ? ? 1_555 A C 56 N3 ? ? A G 56 A C 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A G 42 N2 ? ? ? 1_555 A C 56 O2 ? ? A G 56 A C 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A G 42 O6 ? ? ? 1_555 A C 56 N4 ? ? A G 56 A C 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A G 43 N1 ? ? ? 1_555 A U 55 O2 ? ? A G 57 A U 69 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog67 hydrog ? ? A G 43 O6 ? ? ? 1_555 A U 55 N3 ? ? A G 57 A U 69 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog68 hydrog ? ? A C 44 N3 ? ? ? 1_555 A G 54 N1 ? ? A C 58 A G 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A C 44 N4 ? ? ? 1_555 A G 54 O6 ? ? A C 58 A G 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? A C 44 O2 ? ? ? 1_555 A G 54 N2 ? ? A C 58 A G 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? A A 45 N1 ? ? ? 1_555 A U 53 N3 ? ? A A 59 A U 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? A A 45 N6 ? ? ? 1_555 A U 53 O4 ? ? A A 59 A U 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? A C 47 O2 ? ? ? 1_555 A A 51 N6 ? ? A C 61 A A 65 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A NCO 1081 ? 7 'BINDING SITE FOR RESIDUE NCO A 1081' AC2 Software A NCO 1082 ? 11 'BINDING SITE FOR RESIDUE NCO A 1082' AC3 Software A NCO 1083 ? 10 'BINDING SITE FOR RESIDUE NCO A 1083' AC4 Software A NCO 1084 ? 6 'BINDING SITE FOR RESIDUE NCO A 1084' AC5 Software A NCO 1085 ? 11 'BINDING SITE FOR RESIDUE NCO A 1085' AC6 Software A NCO 1086 ? 3 'BINDING SITE FOR RESIDUE NCO A 1086' AC7 Software A ACT 1087 ? 7 'BINDING SITE FOR RESIDUE ACT A 1087' AC8 Software A 3AW 1088 ? 9 'BINDING SITE FOR RESIDUE 3AW A 1088' AC9 Software A K 1089 ? 4 'BINDING SITE FOR RESIDUE K A 1089' BC1 Software A K 1091 ? 2 'BINDING SITE FOR RESIDUE K A 1091' BC2 Software A K 1094 ? 1 'BINDING SITE FOR RESIDUE K A 1094' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 G A 15 ? G A 29 . ? 4_556 ? 2 AC1 7 U A 16 ? U A 30 . ? 4_556 ? 3 AC1 7 A A 52 ? A A 66 . ? 1_555 ? 4 AC1 7 U A 53 ? U A 67 . ? 1_555 ? 5 AC1 7 HOH P . ? HOH A 2037 . ? 1_555 ? 6 AC1 7 HOH P . ? HOH A 2169 . ? 1_555 ? 7 AC1 7 HOH P . ? HOH A 2206 . ? 1_555 ? 8 AC2 11 C A 25 ? C A 39 . ? 1_555 ? 9 AC2 11 G A 41 ? G A 55 . ? 1_555 ? 10 AC2 11 G A 42 ? G A 56 . ? 1_555 ? 11 AC2 11 G A 43 ? G A 57 . ? 1_555 ? 12 AC2 11 G A 54 ? G A 68 . ? 1_555 ? 13 AC2 11 U A 55 ? U A 69 . ? 1_555 ? 14 AC2 11 HOH P . ? HOH A 2131 . ? 1_555 ? 15 AC2 11 HOH P . ? HOH A 2133 . ? 1_555 ? 16 AC2 11 HOH P . ? HOH A 2137 . ? 1_555 ? 17 AC2 11 HOH P . ? HOH A 2175 . ? 1_555 ? 18 AC2 11 HOH P . ? HOH A 2207 . ? 1_555 ? 19 AC3 10 U A 16 ? U A 30 . ? 1_555 ? 20 AC3 10 G A 17 ? G A 31 . ? 1_555 ? 21 AC3 10 G A 18 ? G A 32 . ? 1_555 ? 22 AC3 10 A A 51 ? A A 65 . ? 1_555 ? 23 AC3 10 A A 52 ? A A 66 . ? 1_555 ? 24 AC3 10 HOH P . ? HOH A 2050 . ? 1_555 ? 25 AC3 10 HOH P . ? HOH A 2052 . ? 1_555 ? 26 AC3 10 HOH P . ? HOH A 2170 . ? 1_555 ? 27 AC3 10 HOH P . ? HOH A 2171 . ? 1_555 ? 28 AC3 10 HOH P . ? HOH A 2209 . ? 1_555 ? 29 AC4 6 U A 22 ? U A 36 . ? 4_545 ? 30 AC4 6 G A 28 ? G A 42 . ? 1_555 ? 31 AC4 6 C A 29 ? C A 43 . ? 1_555 ? 32 AC4 6 G A 58 ? G A 72 . ? 1_545 ? 33 AC4 6 A A 59 ? A A 73 . ? 1_545 ? 34 AC4 6 HOH P . ? HOH A 2103 . ? 1_555 ? 35 AC5 11 G A 24 ? G A 38 . ? 4_555 ? 36 AC5 11 G A 42 ? G A 56 . ? 4_555 ? 37 AC5 11 G A 43 ? G A 57 . ? 1_555 ? 38 AC5 11 C A 44 ? C A 58 . ? 1_555 ? 39 AC5 11 HOH P . ? HOH A 2088 . ? 4_555 ? 40 AC5 11 HOH P . ? HOH A 2129 . ? 4_555 ? 41 AC5 11 HOH P . ? HOH A 2143 . ? 1_555 ? 42 AC5 11 HOH P . ? HOH A 2210 . ? 1_555 ? 43 AC5 11 HOH P . ? HOH A 2211 . ? 1_555 ? 44 AC5 11 HOH P . ? HOH A 2212 . ? 1_555 ? 45 AC5 11 HOH P . ? HOH A 2213 . ? 1_555 ? 46 AC6 3 A A 10 ? A A 24 . ? 1_555 ? 47 AC6 3 C A 57 ? C A 71 . ? 1_555 ? 48 AC6 3 HOH P . ? HOH A 2195 . ? 1_555 ? 49 AC7 7 G A 18 ? G A 32 . ? 1_555 ? 50 AC7 7 A A 19 ? A A 33 . ? 1_555 ? 51 AC7 7 G A 24 ? G A 38 . ? 1_555 ? 52 AC7 7 C A 25 ? C A 39 . ? 1_555 ? 53 AC7 7 A A 52 ? A A 66 . ? 1_555 ? 54 AC7 7 U A 53 ? U A 67 . ? 1_555 ? 55 AC7 7 HOH P . ? HOH A 2170 . ? 1_555 ? 56 AC8 9 A A 7 ? A A 21 . ? 1_555 ? 57 AC8 9 U A 8 ? U A 22 . ? 1_555 ? 58 AC8 9 U A 33 ? U A 47 . ? 1_555 ? 59 AC8 9 U A 37 ? U A 51 . ? 1_555 ? 60 AC8 9 A A 38 ? A A 52 . ? 1_555 ? 61 AC8 9 A A 59 ? A A 73 . ? 1_555 ? 62 AC8 9 U A 60 ? U A 74 . ? 1_555 ? 63 AC8 9 U A 61 ? U A 75 . ? 1_555 ? 64 AC8 9 HOH P . ? HOH A 2216 . ? 1_555 ? 65 AC9 4 A A 26 ? A A 40 . ? 1_555 ? 66 AC9 4 G A 43 ? G A 57 . ? 4_545 ? 67 AC9 4 C A 44 ? C A 58 . ? 4_545 ? 68 AC9 4 HOH P . ? HOH A 2142 . ? 4_545 ? 69 BC1 2 HOH P . ? HOH A 2079 . ? 1_555 ? 70 BC1 2 HOH P . ? HOH A 2084 . ? 1_555 ? 71 BC2 1 HOH P . ? HOH A 2166 . ? 4_556 ? # _database_PDB_matrix.entry_id 2XNZ _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2XNZ _atom_sites.fract_transf_matrix[1][1] 0.007566 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000008 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.028516 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.023925 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CO K N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 15 ? ? ? A . n A 1 2 G 2 16 16 G G A . n A 1 3 A 3 17 17 A A A . n A 1 4 C 4 18 18 C C A . n A 1 5 A 5 19 19 A A A . n A 1 6 U 6 20 20 U U A . n A 1 7 A 7 21 21 A A A . n A 1 8 U 8 22 22 U U A . n A 1 9 A 9 23 23 A A A . n A 1 10 A 10 24 24 A A A . n A 1 11 U 11 25 25 U U A . n A 1 12 C 12 26 26 C C A . n A 1 13 G 13 27 27 G G A . n A 1 14 C 14 28 28 C C A . n A 1 15 G 15 29 29 G G A . n A 1 16 U 16 30 30 U U A . n A 1 17 G 17 31 31 G G A . n A 1 18 G 18 32 32 G G A . n A 1 19 A 19 33 33 A A A . n A 1 20 U 20 34 34 U U A . n A 1 21 A 21 35 35 A A A . n A 1 22 U 22 36 36 U U A . n A 1 23 G 23 37 37 G G A . n A 1 24 G 24 38 38 G G A . n A 1 25 C 25 39 39 C C A . n A 1 26 A 26 40 40 A A A . n A 1 27 C 27 41 41 C C A . n A 1 28 G 28 42 42 G G A . n A 1 29 C 29 43 43 C C A . n A 1 30 A 30 44 44 A A A . n A 1 31 A 31 45 45 A A A . n A 1 32 G 32 46 46 G G A . n A 1 33 U 33 47 47 U U A . n A 1 34 U 34 48 48 U U A . n A 1 35 U 35 49 49 U U A . n A 1 36 C 36 50 50 C C A . n A 1 37 U 37 51 51 U U A . n A 1 38 A 38 52 52 A A A . n A 1 39 C 39 53 53 C C A . n A 1 40 C 40 54 54 C C A . n A 1 41 G 41 55 55 G G A . n A 1 42 G 42 56 56 G G A . n A 1 43 G 43 57 57 G G A . n A 1 44 C 44 58 58 C C A . n A 1 45 A 45 59 59 A A A . n A 1 46 C 46 60 60 C C A . n A 1 47 C 47 61 61 C C A . n A 1 48 G 48 62 62 G G A . n A 1 49 U 49 63 63 U U A . n A 1 50 A 50 64 64 A A A . n A 1 51 A 51 65 65 A A A . n A 1 52 A 52 66 66 A A A . n A 1 53 U 53 67 67 U U A . n A 1 54 G 54 68 68 G G A . n A 1 55 U 55 69 69 U U A . n A 1 56 C 56 70 70 C C A . n A 1 57 C 57 71 71 C C A . n A 1 58 G 58 72 72 G G A . n A 1 59 A 59 73 73 A A A . n A 1 60 U 60 74 74 U U A . n A 1 61 U 61 75 75 U U A . n A 1 62 A 62 76 76 A A A . n A 1 63 U 63 77 77 U U A . n A 1 64 G 64 78 78 G G A . n A 1 65 U 65 79 79 U U A . n A 1 66 C 66 80 80 C C A . n A 1 67 C 67 81 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NCO 1 1081 1081 NCO NCO A . C 2 NCO 1 1082 1082 NCO NCO A . D 2 NCO 1 1083 1083 NCO NCO A . E 2 NCO 1 1084 1084 NCO NCO A . F 2 NCO 1 1085 1085 NCO NCO A . G 2 NCO 1 1086 1086 NCO NCO A . H 3 ACT 1 1087 1087 ACT ACT A . I 4 3AW 1 1088 1088 3AW 3AW A . J 5 K 1 1089 1089 K K A . K 5 K 1 1090 1090 K K A . L 5 K 1 1091 1091 K K A . M 5 K 1 1092 1092 K K A . N 5 K 1 1093 1093 K K A . O 5 K 1 1094 1094 K K A . P 6 HOH 1 2001 2001 HOH HOH A . P 6 HOH 2 2002 2002 HOH HOH A . P 6 HOH 3 2003 2003 HOH HOH A . P 6 HOH 4 2004 2004 HOH HOH A . P 6 HOH 5 2005 2005 HOH HOH A . P 6 HOH 6 2006 2006 HOH HOH A . P 6 HOH 7 2007 2007 HOH HOH A . P 6 HOH 8 2008 2008 HOH HOH A . P 6 HOH 9 2009 2009 HOH HOH A . P 6 HOH 10 2010 2010 HOH HOH A . P 6 HOH 11 2011 2011 HOH HOH A . P 6 HOH 12 2012 2012 HOH HOH A . P 6 HOH 13 2013 2013 HOH HOH A . P 6 HOH 14 2014 2014 HOH HOH A . P 6 HOH 15 2015 2015 HOH HOH A . P 6 HOH 16 2016 2016 HOH HOH A . P 6 HOH 17 2017 2017 HOH HOH A . P 6 HOH 18 2018 2018 HOH HOH A . P 6 HOH 19 2019 2019 HOH HOH A . P 6 HOH 20 2020 2020 HOH HOH A . P 6 HOH 21 2021 2021 HOH HOH A . P 6 HOH 22 2022 2022 HOH HOH A . P 6 HOH 23 2023 2023 HOH HOH A . P 6 HOH 24 2024 2024 HOH HOH A . P 6 HOH 25 2025 2025 HOH HOH A . P 6 HOH 26 2026 2026 HOH HOH A . P 6 HOH 27 2027 2027 HOH HOH A . P 6 HOH 28 2028 2028 HOH HOH A . P 6 HOH 29 2029 2029 HOH HOH A . P 6 HOH 30 2030 2030 HOH HOH A . P 6 HOH 31 2031 2031 HOH HOH A . P 6 HOH 32 2032 2032 HOH HOH A . P 6 HOH 33 2033 2033 HOH HOH A . P 6 HOH 34 2034 2034 HOH HOH A . P 6 HOH 35 2035 2035 HOH HOH A . P 6 HOH 36 2036 2036 HOH HOH A . P 6 HOH 37 2037 2037 HOH HOH A . P 6 HOH 38 2038 2038 HOH HOH A . P 6 HOH 39 2039 2039 HOH HOH A . P 6 HOH 40 2040 2040 HOH HOH A . P 6 HOH 41 2041 2041 HOH HOH A . P 6 HOH 42 2042 2042 HOH HOH A . P 6 HOH 43 2043 2043 HOH HOH A . P 6 HOH 44 2044 2044 HOH HOH A . P 6 HOH 45 2045 2045 HOH HOH A . P 6 HOH 46 2046 2046 HOH HOH A . P 6 HOH 47 2047 2047 HOH HOH A . P 6 HOH 48 2048 2048 HOH HOH A . P 6 HOH 49 2049 2049 HOH HOH A . P 6 HOH 50 2050 2050 HOH HOH A . P 6 HOH 51 2051 2051 HOH HOH A . P 6 HOH 52 2052 2052 HOH HOH A . P 6 HOH 53 2053 2053 HOH HOH A . P 6 HOH 54 2054 2054 HOH HOH A . P 6 HOH 55 2055 2055 HOH HOH A . P 6 HOH 56 2056 2056 HOH HOH A . P 6 HOH 57 2057 2057 HOH HOH A . P 6 HOH 58 2058 2058 HOH HOH A . P 6 HOH 59 2059 2059 HOH HOH A . P 6 HOH 60 2060 2060 HOH HOH A . P 6 HOH 61 2061 2061 HOH HOH A . P 6 HOH 62 2062 2062 HOH HOH A . P 6 HOH 63 2063 2063 HOH HOH A . P 6 HOH 64 2064 2064 HOH HOH A . P 6 HOH 65 2065 2065 HOH HOH A . P 6 HOH 66 2066 2066 HOH HOH A . P 6 HOH 67 2067 2067 HOH HOH A . P 6 HOH 68 2068 2068 HOH HOH A . P 6 HOH 69 2069 2069 HOH HOH A . P 6 HOH 70 2070 2070 HOH HOH A . P 6 HOH 71 2071 2071 HOH HOH A . P 6 HOH 72 2072 2072 HOH HOH A . P 6 HOH 73 2073 2073 HOH HOH A . P 6 HOH 74 2074 2074 HOH HOH A . P 6 HOH 75 2075 2075 HOH HOH A . P 6 HOH 76 2076 2076 HOH HOH A . P 6 HOH 77 2077 2077 HOH HOH A . P 6 HOH 78 2078 2078 HOH HOH A . P 6 HOH 79 2079 2079 HOH HOH A . P 6 HOH 80 2080 2080 HOH HOH A . P 6 HOH 81 2081 2081 HOH HOH A . P 6 HOH 82 2082 2082 HOH HOH A . P 6 HOH 83 2083 2083 HOH HOH A . P 6 HOH 84 2084 2084 HOH HOH A . P 6 HOH 85 2085 2085 HOH HOH A . P 6 HOH 86 2086 2086 HOH HOH A . P 6 HOH 87 2087 2087 HOH HOH A . P 6 HOH 88 2088 2088 HOH HOH A . P 6 HOH 89 2089 2089 HOH HOH A . P 6 HOH 90 2090 2090 HOH HOH A . P 6 HOH 91 2091 2091 HOH HOH A . P 6 HOH 92 2092 2092 HOH HOH A . P 6 HOH 93 2093 2093 HOH HOH A . P 6 HOH 94 2094 2094 HOH HOH A . P 6 HOH 95 2095 2095 HOH HOH A . P 6 HOH 96 2096 2096 HOH HOH A . P 6 HOH 97 2097 2097 HOH HOH A . P 6 HOH 98 2098 2098 HOH HOH A . P 6 HOH 99 2099 2099 HOH HOH A . P 6 HOH 100 2100 2100 HOH HOH A . P 6 HOH 101 2101 2101 HOH HOH A . P 6 HOH 102 2102 2102 HOH HOH A . P 6 HOH 103 2103 2103 HOH HOH A . P 6 HOH 104 2104 2104 HOH HOH A . P 6 HOH 105 2105 2105 HOH HOH A . P 6 HOH 106 2106 2106 HOH HOH A . P 6 HOH 107 2107 2107 HOH HOH A . P 6 HOH 108 2108 2108 HOH HOH A . P 6 HOH 109 2109 2109 HOH HOH A . P 6 HOH 110 2110 2110 HOH HOH A . P 6 HOH 111 2111 2111 HOH HOH A . P 6 HOH 112 2112 2112 HOH HOH A . P 6 HOH 113 2113 2113 HOH HOH A . P 6 HOH 114 2114 2114 HOH HOH A . P 6 HOH 115 2115 2115 HOH HOH A . P 6 HOH 116 2116 2116 HOH HOH A . P 6 HOH 117 2117 2117 HOH HOH A . P 6 HOH 118 2118 2118 HOH HOH A . P 6 HOH 119 2119 2119 HOH HOH A . P 6 HOH 120 2120 2120 HOH HOH A . P 6 HOH 121 2121 2121 HOH HOH A . P 6 HOH 122 2122 2122 HOH HOH A . P 6 HOH 123 2123 2123 HOH HOH A . P 6 HOH 124 2124 2124 HOH HOH A . P 6 HOH 125 2125 2125 HOH HOH A . P 6 HOH 126 2126 2126 HOH HOH A . P 6 HOH 127 2127 2127 HOH HOH A . P 6 HOH 128 2128 2128 HOH HOH A . P 6 HOH 129 2129 2129 HOH HOH A . P 6 HOH 130 2130 2130 HOH HOH A . P 6 HOH 131 2131 2131 HOH HOH A . P 6 HOH 132 2132 2132 HOH HOH A . P 6 HOH 133 2133 2133 HOH HOH A . P 6 HOH 134 2134 2134 HOH HOH A . P 6 HOH 135 2135 2135 HOH HOH A . P 6 HOH 136 2136 2136 HOH HOH A . P 6 HOH 137 2137 2137 HOH HOH A . P 6 HOH 138 2138 2138 HOH HOH A . P 6 HOH 139 2139 2139 HOH HOH A . P 6 HOH 140 2140 2140 HOH HOH A . P 6 HOH 141 2141 2141 HOH HOH A . P 6 HOH 142 2142 2142 HOH HOH A . P 6 HOH 143 2143 2143 HOH HOH A . P 6 HOH 144 2144 2144 HOH HOH A . P 6 HOH 145 2145 2145 HOH HOH A . P 6 HOH 146 2146 2146 HOH HOH A . P 6 HOH 147 2147 2147 HOH HOH A . P 6 HOH 148 2148 2148 HOH HOH A . P 6 HOH 149 2149 2149 HOH HOH A . P 6 HOH 150 2150 2150 HOH HOH A . P 6 HOH 151 2151 2151 HOH HOH A . P 6 HOH 152 2152 2152 HOH HOH A . P 6 HOH 153 2153 2153 HOH HOH A . P 6 HOH 154 2154 2154 HOH HOH A . P 6 HOH 155 2155 2155 HOH HOH A . P 6 HOH 156 2156 2156 HOH HOH A . P 6 HOH 157 2157 2157 HOH HOH A . P 6 HOH 158 2158 2158 HOH HOH A . P 6 HOH 159 2159 2159 HOH HOH A . P 6 HOH 160 2160 2160 HOH HOH A . P 6 HOH 161 2161 2161 HOH HOH A . P 6 HOH 162 2162 2162 HOH HOH A . P 6 HOH 163 2163 2163 HOH HOH A . P 6 HOH 164 2164 2164 HOH HOH A . P 6 HOH 165 2165 2165 HOH HOH A . P 6 HOH 166 2166 2166 HOH HOH A . P 6 HOH 167 2167 2167 HOH HOH A . P 6 HOH 168 2168 2168 HOH HOH A . P 6 HOH 169 2169 2169 HOH HOH A . P 6 HOH 170 2170 2170 HOH HOH A . P 6 HOH 171 2171 2171 HOH HOH A . P 6 HOH 172 2172 2172 HOH HOH A . P 6 HOH 173 2173 2173 HOH HOH A . P 6 HOH 174 2174 2174 HOH HOH A . P 6 HOH 175 2175 2175 HOH HOH A . P 6 HOH 176 2176 2176 HOH HOH A . P 6 HOH 177 2177 2177 HOH HOH A . P 6 HOH 178 2178 2178 HOH HOH A . P 6 HOH 179 2179 2179 HOH HOH A . P 6 HOH 180 2180 2180 HOH HOH A . P 6 HOH 181 2181 2181 HOH HOH A . P 6 HOH 182 2182 2182 HOH HOH A . P 6 HOH 183 2183 2183 HOH HOH A . P 6 HOH 184 2184 2184 HOH HOH A . P 6 HOH 185 2185 2185 HOH HOH A . P 6 HOH 186 2186 2186 HOH HOH A . P 6 HOH 187 2187 2187 HOH HOH A . P 6 HOH 188 2188 2188 HOH HOH A . P 6 HOH 189 2189 2189 HOH HOH A . P 6 HOH 190 2190 2190 HOH HOH A . P 6 HOH 191 2191 2191 HOH HOH A . P 6 HOH 192 2192 2192 HOH HOH A . P 6 HOH 193 2193 2193 HOH HOH A . P 6 HOH 194 2194 2194 HOH HOH A . P 6 HOH 195 2195 2195 HOH HOH A . P 6 HOH 196 2196 2196 HOH HOH A . P 6 HOH 197 2197 2197 HOH HOH A . P 6 HOH 198 2198 2198 HOH HOH A . P 6 HOH 199 2199 2199 HOH HOH A . P 6 HOH 200 2200 2200 HOH HOH A . P 6 HOH 201 2201 2201 HOH HOH A . P 6 HOH 202 2202 2202 HOH HOH A . P 6 HOH 203 2203 2203 HOH HOH A . P 6 HOH 204 2204 2204 HOH HOH A . P 6 HOH 205 2205 2205 HOH HOH A . P 6 HOH 206 2206 2206 HOH HOH A . P 6 HOH 207 2207 2207 HOH HOH A . P 6 HOH 208 2208 2208 HOH HOH A . P 6 HOH 209 2209 2209 HOH HOH A . P 6 HOH 210 2210 2210 HOH HOH A . P 6 HOH 211 2211 2211 HOH HOH A . P 6 HOH 212 2212 2212 HOH HOH A . P 6 HOH 213 2213 2213 HOH HOH A . P 6 HOH 214 2214 2214 HOH HOH A . P 6 HOH 215 2215 2215 HOH HOH A . P 6 HOH 216 2216 2216 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP1 ? A G 43 ? A G 57 ? 4_545 K ? J K . ? A K 1089 ? 1_555 OP2 ? A C 44 ? A C 58 ? 4_545 108.8 ? 2 OP1 ? A G 43 ? A G 57 ? 4_545 K ? J K . ? A K 1089 ? 1_555 O ? P HOH . ? A HOH 2142 ? 4_545 84.1 ? 3 OP2 ? A C 44 ? A C 58 ? 4_545 K ? J K . ? A K 1089 ? 1_555 O ? P HOH . ? A HOH 2142 ? 4_545 57.6 ? 4 O ? P HOH . ? A HOH 2008 ? 4_555 K ? L K . ? A K 1091 ? 1_555 O ? P HOH . ? A HOH 2079 ? 1_555 161.5 ? 5 O ? P HOH . ? A HOH 2008 ? 4_555 K ? L K . ? A K 1091 ? 1_555 O ? P HOH . ? A HOH 2084 ? 1_555 86.0 ? 6 O ? P HOH . ? A HOH 2079 ? 1_555 K ? L K . ? A K 1091 ? 1_555 O ? P HOH . ? A HOH 2084 ? 1_555 84.0 ? 7 O ? P HOH . ? A HOH 2008 ? 4_555 K ? L K . ? A K 1091 ? 1_555 O ? P HOH . ? A HOH 2091 ? 4_555 81.6 ? 8 O ? P HOH . ? A HOH 2079 ? 1_555 K ? L K . ? A K 1091 ? 1_555 O ? P HOH . ? A HOH 2091 ? 4_555 88.3 ? 9 O ? P HOH . ? A HOH 2084 ? 1_555 K ? L K . ? A K 1091 ? 1_555 O ? P HOH . ? A HOH 2091 ? 4_555 114.3 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-04-06 2 'Structure model' 1 1 2011-05-08 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2018-06-06 5 'Structure model' 1 4 2023-12-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' Advisory 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Database references' 6 4 'Structure model' 'Structure summary' 7 5 'Structure model' Advisory 8 5 'Structure model' 'Data collection' 9 5 'Structure model' 'Database references' 10 5 'Structure model' 'Derived calculations' 11 5 'Structure model' Other 12 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' citation 2 4 'Structure model' citation_author 3 4 'Structure model' entity 4 4 'Structure model' pdbx_unobs_or_zero_occ_atoms 5 4 'Structure model' struct 6 5 'Structure model' chem_comp_atom 7 5 'Structure model' chem_comp_bond 8 5 'Structure model' database_2 9 5 'Structure model' pdbx_database_status 10 5 'Structure model' pdbx_initial_refinement_model 11 5 'Structure model' pdbx_struct_conn_angle 12 5 'Structure model' pdbx_unobs_or_zero_occ_atoms 13 5 'Structure model' struct_conn 14 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_citation.journal_abbrev' 2 4 'Structure model' '_citation.journal_id_ISSN' 3 4 'Structure model' '_citation.page_last' 4 4 'Structure model' '_citation.pdbx_database_id_DOI' 5 4 'Structure model' '_citation.title' 6 4 'Structure model' '_citation_author.name' 7 4 'Structure model' '_entity.pdbx_description' 8 4 'Structure model' '_struct.title' 9 5 'Structure model' '_database_2.pdbx_DOI' 10 5 'Structure model' '_database_2.pdbx_database_accession' 11 5 'Structure model' '_pdbx_database_status.status_code_sf' 12 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 13 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 14 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 15 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 16 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 17 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 18 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_symmetry' 19 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 20 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 21 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 22 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 23 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 24 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 25 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_symmetry' 26 5 'Structure model' '_pdbx_struct_conn_angle.value' 27 5 'Structure model' '_struct_conn.pdbx_dist_value' 28 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 29 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 30 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 31 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 32 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 33 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 34 5 'Structure model' '_struct_conn.ptnr1_symmetry' 35 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 36 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 37 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 38 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 39 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 40 5 'Structure model' '_struct_conn.ptnr2_label_seq_id' 41 5 'Structure model' '_struct_conn.ptnr2_symmetry' 42 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 43 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 44 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.5.0109 ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 MOLREP phasing . ? 4 # _pdbx_entry_details.entry_id 2XNZ _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details 'RESIDUE 74 C WAS ENGINEERED TO U.' _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N1 A U 34 ? ? "C1'" A U 34 ? ? "C2'" A U 34 ? ? 104.60 112.00 -7.40 1.10 N 2 1 "O4'" A U 47 ? ? "C1'" A U 47 ? ? N1 A U 47 ? ? 113.14 108.50 4.64 0.70 N 3 1 "O4'" A U 51 ? ? "C1'" A U 51 ? ? N1 A U 51 ? ? 112.96 108.50 4.46 0.70 N 4 1 "C3'" A A 65 ? ? "O3'" A A 65 ? ? P A A 66 ? ? 126.93 119.70 7.23 1.20 Y 5 1 "O4'" A U 74 ? ? "C1'" A U 74 ? ? N1 A U 74 ? ? 112.93 108.50 4.43 0.70 N # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 N 0 A NCO 1084 ? N1 ? E NCO ? N1 2 1 N 0 A NCO 1086 ? N3 ? G NCO ? N3 3 1 N 0 A NCO 1086 ? N5 ? G NCO ? N5 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A G 15 ? A G 1 2 1 Y 1 A C 81 ? A C 67 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 3AW N1 N Y N 1 3AW C6 C Y N 2 3AW C5 C N N 3 3AW NAA N Y N 4 3AW C2 C Y N 5 3AW CAI C Y N 6 3AW NAH N Y N 7 3AW NAI N N N 8 3AW N3 N N N 9 3AW H51C H N N 10 3AW H52C H N N 11 3AW H53C H N N 12 3AW H31N H N N 13 3AW H32N H N N 14 3AW HAI1 H N N 15 3AW HAI2 H N N 16 A OP3 O N N 17 A P P N N 18 A OP1 O N N 19 A OP2 O N N 20 A "O5'" O N N 21 A "C5'" C N N 22 A "C4'" C N R 23 A "O4'" O N N 24 A "C3'" C N S 25 A "O3'" O N N 26 A "C2'" C N R 27 A "O2'" O N N 28 A "C1'" C N R 29 A N9 N Y N 30 A C8 C Y N 31 A N7 N Y N 32 A C5 C Y N 33 A C6 C Y N 34 A N6 N N N 35 A N1 N Y N 36 A C2 C Y N 37 A N3 N Y N 38 A C4 C Y N 39 A HOP3 H N N 40 A HOP2 H N N 41 A "H5'" H N N 42 A "H5''" H N N 43 A "H4'" H N N 44 A "H3'" H N N 45 A "HO3'" H N N 46 A "H2'" H N N 47 A "HO2'" H N N 48 A "H1'" H N N 49 A H8 H N N 50 A H61 H N N 51 A H62 H N N 52 A H2 H N N 53 ACT C C N N 54 ACT O O N N 55 ACT OXT O N N 56 ACT CH3 C N N 57 ACT H1 H N N 58 ACT H2 H N N 59 ACT H3 H N N 60 C OP3 O N N 61 C P P N N 62 C OP1 O N N 63 C OP2 O N N 64 C "O5'" O N N 65 C "C5'" C N N 66 C "C4'" C N R 67 C "O4'" O N N 68 C "C3'" C N S 69 C "O3'" O N N 70 C "C2'" C N R 71 C "O2'" O N N 72 C "C1'" C N R 73 C N1 N N N 74 C C2 C N N 75 C O2 O N N 76 C N3 N N N 77 C C4 C N N 78 C N4 N N N 79 C C5 C N N 80 C C6 C N N 81 C HOP3 H N N 82 C HOP2 H N N 83 C "H5'" H N N 84 C "H5''" H N N 85 C "H4'" H N N 86 C "H3'" H N N 87 C "HO3'" H N N 88 C "H2'" H N N 89 C "HO2'" H N N 90 C "H1'" H N N 91 C H41 H N N 92 C H42 H N N 93 C H5 H N N 94 C H6 H N N 95 G OP3 O N N 96 G P P N N 97 G OP1 O N N 98 G OP2 O N N 99 G "O5'" O N N 100 G "C5'" C N N 101 G "C4'" C N R 102 G "O4'" O N N 103 G "C3'" C N S 104 G "O3'" O N N 105 G "C2'" C N R 106 G "O2'" O N N 107 G "C1'" C N R 108 G N9 N Y N 109 G C8 C Y N 110 G N7 N Y N 111 G C5 C Y N 112 G C6 C N N 113 G O6 O N N 114 G N1 N N N 115 G C2 C N N 116 G N2 N N N 117 G N3 N N N 118 G C4 C Y N 119 G HOP3 H N N 120 G HOP2 H N N 121 G "H5'" H N N 122 G "H5''" H N N 123 G "H4'" H N N 124 G "H3'" H N N 125 G "HO3'" H N N 126 G "H2'" H N N 127 G "HO2'" H N N 128 G "H1'" H N N 129 G H8 H N N 130 G H1 H N N 131 G H21 H N N 132 G H22 H N N 133 HOH O O N N 134 HOH H1 H N N 135 HOH H2 H N N 136 K K K N N 137 NCO CO CO N N 138 NCO N1 N N N 139 NCO N2 N N N 140 NCO N3 N N N 141 NCO N4 N N N 142 NCO N5 N N N 143 NCO N6 N N N 144 NCO HN11 H N N 145 NCO HN12 H N N 146 NCO HN13 H N N 147 NCO HN21 H N N 148 NCO HN22 H N N 149 NCO HN23 H N N 150 NCO HN31 H N N 151 NCO HN32 H N N 152 NCO HN33 H N N 153 NCO HN41 H N N 154 NCO HN42 H N N 155 NCO HN43 H N N 156 NCO HN51 H N N 157 NCO HN52 H N N 158 NCO HN53 H N N 159 NCO HN61 H N N 160 NCO HN62 H N N 161 NCO HN63 H N N 162 U OP3 O N N 163 U P P N N 164 U OP1 O N N 165 U OP2 O N N 166 U "O5'" O N N 167 U "C5'" C N N 168 U "C4'" C N R 169 U "O4'" O N N 170 U "C3'" C N S 171 U "O3'" O N N 172 U "C2'" C N R 173 U "O2'" O N N 174 U "C1'" C N R 175 U N1 N N N 176 U C2 C N N 177 U O2 O N N 178 U N3 N N N 179 U C4 C N N 180 U O4 O N N 181 U C5 C N N 182 U C6 C N N 183 U HOP3 H N N 184 U HOP2 H N N 185 U "H5'" H N N 186 U "H5''" H N N 187 U "H4'" H N N 188 U "H3'" H N N 189 U "HO3'" H N N 190 U "H2'" H N N 191 U "HO2'" H N N 192 U "H1'" H N N 193 U H3 H N N 194 U H5 H N N 195 U H6 H N N 196 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 3AW NAA C6 doub Y N 1 3AW NAA CAI sing Y N 2 3AW C6 C5 sing N N 3 3AW C6 N1 sing Y N 4 3AW N1 C2 doub Y N 5 3AW C2 NAH sing Y N 6 3AW C2 N3 sing N N 7 3AW NAH CAI doub Y N 8 3AW NAI CAI sing N N 9 3AW C5 H51C sing N N 10 3AW C5 H52C sing N N 11 3AW C5 H53C sing N N 12 3AW N3 H31N sing N N 13 3AW N3 H32N sing N N 14 3AW NAI HAI1 sing N N 15 3AW NAI HAI2 sing N N 16 A OP3 P sing N N 17 A OP3 HOP3 sing N N 18 A P OP1 doub N N 19 A P OP2 sing N N 20 A P "O5'" sing N N 21 A OP2 HOP2 sing N N 22 A "O5'" "C5'" sing N N 23 A "C5'" "C4'" sing N N 24 A "C5'" "H5'" sing N N 25 A "C5'" "H5''" sing N N 26 A "C4'" "O4'" sing N N 27 A "C4'" "C3'" sing N N 28 A "C4'" "H4'" sing N N 29 A "O4'" "C1'" sing N N 30 A "C3'" "O3'" sing N N 31 A "C3'" "C2'" sing N N 32 A "C3'" "H3'" sing N N 33 A "O3'" "HO3'" sing N N 34 A "C2'" "O2'" sing N N 35 A "C2'" "C1'" sing N N 36 A "C2'" "H2'" sing N N 37 A "O2'" "HO2'" sing N N 38 A "C1'" N9 sing N N 39 A "C1'" "H1'" sing N N 40 A N9 C8 sing Y N 41 A N9 C4 sing Y N 42 A C8 N7 doub Y N 43 A C8 H8 sing N N 44 A N7 C5 sing Y N 45 A C5 C6 sing Y N 46 A C5 C4 doub Y N 47 A C6 N6 sing N N 48 A C6 N1 doub Y N 49 A N6 H61 sing N N 50 A N6 H62 sing N N 51 A N1 C2 sing Y N 52 A C2 N3 doub Y N 53 A C2 H2 sing N N 54 A N3 C4 sing Y N 55 ACT C O doub N N 56 ACT C OXT sing N N 57 ACT C CH3 sing N N 58 ACT CH3 H1 sing N N 59 ACT CH3 H2 sing N N 60 ACT CH3 H3 sing N N 61 C OP3 P sing N N 62 C OP3 HOP3 sing N N 63 C P OP1 doub N N 64 C P OP2 sing N N 65 C P "O5'" sing N N 66 C OP2 HOP2 sing N N 67 C "O5'" "C5'" sing N N 68 C "C5'" "C4'" sing N N 69 C "C5'" "H5'" sing N N 70 C "C5'" "H5''" sing N N 71 C "C4'" "O4'" sing N N 72 C "C4'" "C3'" sing N N 73 C "C4'" "H4'" sing N N 74 C "O4'" "C1'" sing N N 75 C "C3'" "O3'" sing N N 76 C "C3'" "C2'" sing N N 77 C "C3'" "H3'" sing N N 78 C "O3'" "HO3'" sing N N 79 C "C2'" "O2'" sing N N 80 C "C2'" "C1'" sing N N 81 C "C2'" "H2'" sing N N 82 C "O2'" "HO2'" sing N N 83 C "C1'" N1 sing N N 84 C "C1'" "H1'" sing N N 85 C N1 C2 sing N N 86 C N1 C6 sing N N 87 C C2 O2 doub N N 88 C C2 N3 sing N N 89 C N3 C4 doub N N 90 C C4 N4 sing N N 91 C C4 C5 sing N N 92 C N4 H41 sing N N 93 C N4 H42 sing N N 94 C C5 C6 doub N N 95 C C5 H5 sing N N 96 C C6 H6 sing N N 97 G OP3 P sing N N 98 G OP3 HOP3 sing N N 99 G P OP1 doub N N 100 G P OP2 sing N N 101 G P "O5'" sing N N 102 G OP2 HOP2 sing N N 103 G "O5'" "C5'" sing N N 104 G "C5'" "C4'" sing N N 105 G "C5'" "H5'" sing N N 106 G "C5'" "H5''" sing N N 107 G "C4'" "O4'" sing N N 108 G "C4'" "C3'" sing N N 109 G "C4'" "H4'" sing N N 110 G "O4'" "C1'" sing N N 111 G "C3'" "O3'" sing N N 112 G "C3'" "C2'" sing N N 113 G "C3'" "H3'" sing N N 114 G "O3'" "HO3'" sing N N 115 G "C2'" "O2'" sing N N 116 G "C2'" "C1'" sing N N 117 G "C2'" "H2'" sing N N 118 G "O2'" "HO2'" sing N N 119 G "C1'" N9 sing N N 120 G "C1'" "H1'" sing N N 121 G N9 C8 sing Y N 122 G N9 C4 sing Y N 123 G C8 N7 doub Y N 124 G C8 H8 sing N N 125 G N7 C5 sing Y N 126 G C5 C6 sing N N 127 G C5 C4 doub Y N 128 G C6 O6 doub N N 129 G C6 N1 sing N N 130 G N1 C2 sing N N 131 G N1 H1 sing N N 132 G C2 N2 sing N N 133 G C2 N3 doub N N 134 G N2 H21 sing N N 135 G N2 H22 sing N N 136 G N3 C4 sing N N 137 HOH O H1 sing N N 138 HOH O H2 sing N N 139 NCO CO N1 sing N N 140 NCO CO N2 sing N N 141 NCO CO N3 sing N N 142 NCO CO N4 sing N N 143 NCO CO N5 sing N N 144 NCO CO N6 sing N N 145 NCO N1 HN11 sing N N 146 NCO N1 HN12 sing N N 147 NCO N1 HN13 sing N N 148 NCO N2 HN21 sing N N 149 NCO N2 HN22 sing N N 150 NCO N2 HN23 sing N N 151 NCO N3 HN31 sing N N 152 NCO N3 HN32 sing N N 153 NCO N3 HN33 sing N N 154 NCO N4 HN41 sing N N 155 NCO N4 HN42 sing N N 156 NCO N4 HN43 sing N N 157 NCO N5 HN51 sing N N 158 NCO N5 HN52 sing N N 159 NCO N5 HN53 sing N N 160 NCO N6 HN61 sing N N 161 NCO N6 HN62 sing N N 162 NCO N6 HN63 sing N N 163 U OP3 P sing N N 164 U OP3 HOP3 sing N N 165 U P OP1 doub N N 166 U P OP2 sing N N 167 U P "O5'" sing N N 168 U OP2 HOP2 sing N N 169 U "O5'" "C5'" sing N N 170 U "C5'" "C4'" sing N N 171 U "C5'" "H5'" sing N N 172 U "C5'" "H5''" sing N N 173 U "C4'" "O4'" sing N N 174 U "C4'" "C3'" sing N N 175 U "C4'" "H4'" sing N N 176 U "O4'" "C1'" sing N N 177 U "C3'" "O3'" sing N N 178 U "C3'" "C2'" sing N N 179 U "C3'" "H3'" sing N N 180 U "O3'" "HO3'" sing N N 181 U "C2'" "O2'" sing N N 182 U "C2'" "C1'" sing N N 183 U "C2'" "H2'" sing N N 184 U "O2'" "HO2'" sing N N 185 U "C1'" N1 sing N N 186 U "C1'" "H1'" sing N N 187 U N1 C2 sing N N 188 U N1 C6 sing N N 189 U C2 O2 doub N N 190 U C2 N3 sing N N 191 U N3 C4 sing N N 192 U N3 H3 sing N N 193 U C4 O4 doub N N 194 U C4 C5 sing N N 195 U C5 C6 doub N N 196 U C5 H5 sing N N 197 U C6 H6 sing N N 198 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2XNZ 'double helix' 2XNZ 'a-form double helix' 2XNZ 'mismatched base pair' 2XNZ 'internal loop' 2XNZ 'triple helix' 2XNZ 'three-way junction' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 2 1_555 A C 66 1_555 -0.064 -0.094 -0.247 -6.977 -16.367 2.393 1 A_G16:C80_A A 16 ? A 80 ? 19 1 1 A A 3 1_555 A U 65 1_555 0.149 0.056 -0.023 0.636 -16.760 6.105 2 A_A17:U79_A A 17 ? A 79 ? 20 1 1 A C 4 1_555 A G 64 1_555 -0.017 -0.273 0.029 2.215 -16.126 -2.657 3 A_C18:G78_A A 18 ? A 78 ? 19 1 1 A A 5 1_555 A U 63 1_555 -0.039 -0.167 0.050 -5.730 -13.595 0.894 4 A_A19:U77_A A 19 ? A 77 ? 20 1 1 A U 6 1_555 A A 62 1_555 0.236 -0.139 0.203 -7.131 -20.241 1.673 5 A_U20:A76_A A 20 ? A 76 ? 20 1 1 A A 7 1_555 A U 61 1_555 0.012 -0.106 0.133 -4.027 -14.312 -1.247 6 A_A21:U75_A A 21 ? A 75 ? 20 1 1 A U 33 1_555 A U 37 1_555 3.256 -0.216 0.480 27.833 40.581 -76.435 7 A_U47:U51_A A 47 ? A 51 ? ? ? 1 A U 8 1_555 A A 38 1_555 -0.118 -0.111 -0.007 10.208 3.051 -3.885 8 A_U22:A52_A A 22 ? A 52 ? 20 1 1 A G 32 1_555 A C 39 1_555 -0.240 -0.020 -0.320 -24.180 -4.840 -1.187 9 A_G46:C53_A A 46 ? A 53 ? 19 1 1 A A 31 1_555 A U 11 1_555 -0.127 -0.101 0.184 -6.215 -14.459 3.857 10 A_A45:U25_A A 45 ? A 25 ? 20 1 1 A A 30 1_555 A C 12 1_555 1.731 0.252 0.071 -0.659 -16.995 9.301 11 A_A44:C26_A A 44 ? A 26 ? ? 1 1 A C 29 1_555 A G 13 1_555 0.214 -0.162 0.060 5.024 -10.407 -0.147 12 A_C43:G27_A A 43 ? A 27 ? 19 1 1 A G 28 1_555 A C 14 1_555 -0.042 -0.114 0.034 -2.626 -6.365 0.837 13 A_G42:C28_A A 42 ? A 28 ? 19 1 1 A C 27 1_555 A G 15 1_555 0.353 -0.236 -0.052 -1.039 -11.152 -2.000 14 A_C41:G29_A A 41 ? A 29 ? 19 1 1 A A 26 1_555 A U 16 1_555 0.082 -0.117 0.045 -3.574 -4.051 3.329 15 A_A40:U30_A A 40 ? A 30 ? 20 1 1 A C 25 1_555 A G 17 1_555 0.147 -0.169 0.065 -5.315 -4.657 0.490 16 A_C39:G31_A A 39 ? A 31 ? 19 1 1 A A 19 1_555 A A 52 1_555 4.158 1.404 -0.132 -7.668 -7.714 -110.799 17 A_A33:A66_A A 33 ? A 66 ? 5 4 1 A U 20 1_555 A A 51 1_555 4.223 -1.989 -0.398 -3.287 -6.223 -98.917 18 A_U34:A65_A A 34 ? A 65 ? 24 4 1 A A 21 1_555 A A 50 1_555 -4.161 1.326 0.369 -3.386 4.898 -110.038 19 A_A35:A64_A A 35 ? A 64 ? 5 4 1 A G 23 1_555 A C 47 1_555 -0.170 -0.189 0.559 4.097 -9.323 -4.304 20 A_G37:C61_A A 37 ? A 61 ? 19 1 1 A G 24 1_555 A C 46 1_555 -0.050 -0.113 0.476 19.052 -13.452 -0.958 21 A_G38:C60_A A 38 ? A 60 ? 19 1 1 A U 53 1_555 A A 45 1_555 -0.176 -0.070 -0.049 4.909 -12.703 1.079 22 A_U67:A59_A A 67 ? A 59 ? 20 1 1 A G 54 1_555 A C 44 1_555 -0.166 -0.170 0.095 -5.718 -14.080 0.229 23 A_G68:C58_A A 68 ? A 58 ? 19 1 1 A U 55 1_555 A G 43 1_555 2.288 -0.625 0.176 -0.918 -16.357 -5.415 24 A_U69:G57_A A 69 ? A 57 ? 28 1 1 A C 56 1_555 A G 42 1_555 0.303 -0.248 0.252 -0.737 -13.420 -2.109 25 A_C70:G56_A A 70 ? A 56 ? 19 1 1 A C 57 1_555 A G 41 1_555 0.057 -0.111 0.165 6.321 -10.075 -3.463 26 A_C71:G55_A A 71 ? A 55 ? 19 1 1 A G 58 1_555 A C 40 1_555 -0.096 -0.151 0.066 3.682 -12.628 0.316 27 A_G72:C54_A A 72 ? A 54 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 2 1_555 A C 66 1_555 A A 3 1_555 A U 65 1_555 0.019 -1.106 3.042 -2.249 7.886 33.823 -2.925 -0.338 2.717 13.313 3.796 34.775 1 AA_G16A17:U79C80_AA A 16 ? A 80 ? A 17 ? A 79 ? 1 A A 3 1_555 A U 65 1_555 A C 4 1_555 A G 64 1_555 0.199 -1.931 3.189 0.339 7.487 27.984 -5.354 -0.331 2.597 15.141 -0.687 28.951 2 AA_A17C18:G78U79_AA A 17 ? A 79 ? A 18 ? A 78 ? 1 A C 4 1_555 A G 64 1_555 A A 5 1_555 A U 63 1_555 -0.155 -1.750 3.299 -0.290 13.120 30.467 -5.071 0.228 2.367 23.636 0.523 33.112 3 AA_C18A19:U77G78_AA A 18 ? A 78 ? A 19 ? A 77 ? 1 A A 5 1_555 A U 63 1_555 A U 6 1_555 A A 62 1_555 0.155 -1.453 3.317 0.628 12.162 32.021 -4.272 -0.171 2.610 21.117 -1.090 34.202 4 AA_A19U20:A76U77_AA A 19 ? A 77 ? A 20 ? A 76 ? 1 A U 6 1_555 A A 62 1_555 A A 7 1_555 A U 61 1_555 0.495 -1.525 2.986 2.906 17.495 29.093 -4.848 -0.475 1.841 31.416 -5.219 33.972 5 AA_U20A21:U75A76_AA A 20 ? A 76 ? A 21 ? A 75 ? 1 A A 7 1_555 A U 61 1_555 A U 33 1_555 A U 37 1_555 1.918 -0.458 6.537 -29.119 -161.656 38.821 2.862 -1.524 2.296 -85.986 15.488 165.158 6 AA_A21U47:U51U75_AA A 21 ? A 75 ? A 47 ? A 51 ? 1 A U 33 1_555 A U 37 1_555 A U 8 1_555 A A 38 1_555 -0.249 1.191 -3.211 -3.340 -24.058 -1.318 -7.818 0.101 0.968 86.116 -11.955 -24.324 7 AA_U47U22:A52U51_AA A 47 ? A 51 ? A 22 ? A 52 ? 1 A U 8 1_555 A A 38 1_555 A G 32 1_555 A C 39 1_555 2.228 -0.199 -2.611 3.594 -8.119 -45.182 -0.326 2.595 -2.765 10.448 4.624 -46.002 8 AA_U22G46:C53A52_AA A 22 ? A 52 ? A 46 ? A 53 ? 1 A G 32 1_555 A C 39 1_555 A A 31 1_555 A U 11 1_555 -1.859 0.311 -3.567 -14.269 -4.204 -55.429 -0.591 -1.037 -3.869 4.431 -15.041 -57.237 9 AA_G46A45:U25C53_AA A 46 ? A 53 ? A 45 ? A 25 ? 1 A A 31 1_555 A U 11 1_555 A A 30 1_555 A C 12 1_555 -0.493 2.516 -3.098 -1.915 -7.557 -24.801 -7.346 -0.653 -2.276 17.064 -4.325 -25.979 10 AA_A45A44:C26U25_AA A 45 ? A 25 ? A 44 ? A 26 ? 1 A A 30 1_555 A C 12 1_555 A C 29 1_555 A G 13 1_555 -0.144 1.623 -3.325 -1.352 -9.622 -35.485 -3.828 -0.052 -2.808 15.433 -2.169 -36.750 11 AA_A44C43:G27C26_AA A 44 ? A 26 ? A 43 ? A 27 ? 1 A C 29 1_555 A G 13 1_555 A G 28 1_555 A C 14 1_555 0.894 2.470 -3.057 2.951 -4.571 -25.755 -6.511 1.262 -2.670 10.111 6.529 -26.314 12 AA_C43G42:C28G27_AA A 43 ? A 27 ? A 42 ? A 28 ? 1 A G 28 1_555 A C 14 1_555 A C 27 1_555 A G 15 1_555 -0.807 1.921 -3.138 -0.810 -8.942 -28.238 -5.415 -1.429 -2.449 17.769 -1.609 -29.603 13 AA_G42C41:G29C28_AA A 42 ? A 28 ? A 41 ? A 29 ? 1 A C 27 1_555 A G 15 1_555 A A 26 1_555 A U 16 1_555 0.089 1.296 -3.263 -2.212 -8.829 -31.870 -3.682 0.510 -2.801 15.683 -3.930 -33.112 14 AA_C41A40:U30G29_AA A 41 ? A 29 ? A 40 ? A 30 ? 1 A A 26 1_555 A U 16 1_555 A C 25 1_555 A G 17 1_555 0.741 1.816 -3.149 -0.939 -3.816 -32.300 -3.860 1.475 -2.899 6.828 -1.680 -32.531 15 AA_A40C39:G31U30_AA A 40 ? A 30 ? A 39 ? A 31 ? 1 A A 19 1_555 A A 52 1_555 A U 20 1_555 A A 51 1_555 0.097 -1.848 3.321 9.626 3.269 38.457 -3.099 0.974 3.095 4.860 -14.312 39.729 16 AA_A33U34:A65A66_AA A 33 ? A 66 ? A 34 ? A 65 ? 1 A U 20 1_555 A A 51 1_555 A A 21 1_555 A A 50 1_555 -3.797 4.105 3.612 -19.980 16.736 -19.685 -8.122 -7.727 -2.194 -34.388 -41.052 -32.559 17 AA_U34A35:A64A65_AA A 34 ? A 65 ? A 35 ? A 64 ? 1 A G 23 1_555 A C 47 1_555 A G 24 1_555 A C 46 1_555 0.616 -0.625 3.024 2.177 6.546 28.960 -2.467 -0.784 2.854 12.860 -4.277 29.754 18 AA_G37G38:C60C61_AA A 37 ? A 61 ? A 38 ? A 60 ? 1 A G 24 1_555 A C 46 1_555 A U 53 1_555 A A 45 1_555 -2.068 -0.540 3.276 -4.515 8.994 54.271 -1.124 1.964 3.304 9.765 4.902 55.127 19 AA_G38U67:A59C60_AA A 38 ? A 60 ? A 67 ? A 59 ? 1 A U 53 1_555 A A 45 1_555 A G 54 1_555 A C 44 1_555 -0.462 -1.616 3.505 -1.815 5.345 34.359 -3.546 0.486 3.244 8.972 3.047 34.806 20 AA_U67G68:C58A59_AA A 67 ? A 59 ? A 68 ? A 58 ? 1 A G 54 1_555 A C 44 1_555 A U 55 1_555 A G 43 1_555 -0.572 -1.150 3.102 -0.090 1.795 42.993 -1.734 0.772 3.055 2.448 0.122 43.029 21 AA_G68U69:G57C58_AA A 68 ? A 58 ? A 69 ? A 57 ? 1 A U 55 1_555 A G 43 1_555 A C 56 1_555 A G 42 1_555 -0.072 -1.496 3.064 2.613 7.776 26.916 -4.675 0.685 2.523 16.234 -5.454 28.116 22 AA_U69C70:G56G57_AA A 69 ? A 57 ? A 70 ? A 56 ? 1 A C 56 1_555 A G 42 1_555 A C 57 1_555 A G 41 1_555 0.257 -0.823 3.131 0.764 5.785 31.523 -2.466 -0.336 2.942 10.536 -1.392 32.046 23 AA_C70C71:G55G56_AA A 70 ? A 56 ? A 71 ? A 55 ? 1 A C 57 1_555 A G 41 1_555 A G 58 1_555 A C 40 1_555 0.877 -1.783 3.143 0.143 8.519 33.491 -4.186 -1.458 2.628 14.493 -0.243 34.528 24 AA_C71G72:C54G55_AA A 71 ? A 55 ? A 72 ? A 54 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'COBALT HEXAMMINE(III)' NCO 3 'ACETATE ION' ACT 4 6-METHYL-1,3,5-TRIAZINE-2,4-DIAMINE 3AW 5 'POTASSIUM ION' K 6 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2G9C _pdbx_initial_refinement_model.details 'PDB ENTRY 2G9C' #