data_2XOM # _entry.id 2XOM # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.329 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2XOM PDBE EBI-45098 WWPDB D_1290045098 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 2XON _pdbx_database_related.content_type unspecified _pdbx_database_related.details 'STRUCTURE OF TMCBM61 IN COMPLEX WITH BETA- 1,4-GALACTOTRIOSE AT 1.4 A RESOLUTION' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2XOM _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2010-08-20 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Cid, M.' 1 'Lodberg-Pedersen, H.' 2 'Kaneko, S.' 3 'Coutinho, P.M.' 4 'Henrissat, B.' 5 'Willats, W.G.T.' 6 'Boraston, A.B.' 7 # _citation.id primary _citation.title 'Recognition of the Helical Structure of Beta-1,4-Galactan by a New Family of Carbohydrate-Binding Modules.' _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 285 _citation.page_first 35999 _citation.page_last ? _citation.year 2010 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20826814 _citation.pdbx_database_id_DOI 10.1074/JBC.M110.166330 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Cid, M.' 1 ? primary 'Pedersen, H.L.' 2 ? primary 'Kaneko, S.' 3 ? primary 'Coutinho, P.M.' 4 ? primary 'Henrissat, B.' 5 ? primary 'Willats, W.G.T.' 6 ? primary 'Boraston, A.B.' 7 ? # _cell.entry_id 2XOM _cell.length_a 82.915 _cell.length_b 31.920 _cell.length_c 67.790 _cell.angle_alpha 90.00 _cell.angle_beta 128.28 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2XOM _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'ARABINOGALACTAN ENDO-1,4-BETA-GALACTOSIDASE' 17218.098 1 ? ? 'CARBOHYDRATE-BINDING MODULES, RESIDUES 461-606' ? 2 branched man 'beta-D-galactopyranose-(1-4)-beta-D-galactopyranose-(1-4)-beta-D-galactopyranose' 504.438 1 ? ? ? ? 3 non-polymer syn 'CALCIUM ION' 40.078 1 ? ? ? ? 4 water nat water 18.015 284 ? ? ? ? # _entity_name_com.entity_id 2 _entity_name_com.name 4beta-beta-galactotriose # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSHMASSRNYLKNPGFETGEFSPWRVSGDKKAVKVVKANPSSNAHQGEYAVNFWLDESFSFELSQEVELPAGVYRVGFWT HGEKGVKIALKVSDYGGNERSVEVETTGWLEWKNPEIRNIKVETGRIKITVSVEGRAGDWGFIDDFYLFREE ; _entity_poly.pdbx_seq_one_letter_code_can ;GSHMASSRNYLKNPGFETGEFSPWRVSGDKKAVKVVKANPSSNAHQGEYAVNFWLDESFSFELSQEVELPAGVYRVGFWT HGEKGVKIALKVSDYGGNERSVEVETTGWLEWKNPEIRNIKVETGRIKITVSVEGRAGDWGFIDDFYLFREE ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 HIS n 1 4 MET n 1 5 ALA n 1 6 SER n 1 7 SER n 1 8 ARG n 1 9 ASN n 1 10 TYR n 1 11 LEU n 1 12 LYS n 1 13 ASN n 1 14 PRO n 1 15 GLY n 1 16 PHE n 1 17 GLU n 1 18 THR n 1 19 GLY n 1 20 GLU n 1 21 PHE n 1 22 SER n 1 23 PRO n 1 24 TRP n 1 25 ARG n 1 26 VAL n 1 27 SER n 1 28 GLY n 1 29 ASP n 1 30 LYS n 1 31 LYS n 1 32 ALA n 1 33 VAL n 1 34 LYS n 1 35 VAL n 1 36 VAL n 1 37 LYS n 1 38 ALA n 1 39 ASN n 1 40 PRO n 1 41 SER n 1 42 SER n 1 43 ASN n 1 44 ALA n 1 45 HIS n 1 46 GLN n 1 47 GLY n 1 48 GLU n 1 49 TYR n 1 50 ALA n 1 51 VAL n 1 52 ASN n 1 53 PHE n 1 54 TRP n 1 55 LEU n 1 56 ASP n 1 57 GLU n 1 58 SER n 1 59 PHE n 1 60 SER n 1 61 PHE n 1 62 GLU n 1 63 LEU n 1 64 SER n 1 65 GLN n 1 66 GLU n 1 67 VAL n 1 68 GLU n 1 69 LEU n 1 70 PRO n 1 71 ALA n 1 72 GLY n 1 73 VAL n 1 74 TYR n 1 75 ARG n 1 76 VAL n 1 77 GLY n 1 78 PHE n 1 79 TRP n 1 80 THR n 1 81 HIS n 1 82 GLY n 1 83 GLU n 1 84 LYS n 1 85 GLY n 1 86 VAL n 1 87 LYS n 1 88 ILE n 1 89 ALA n 1 90 LEU n 1 91 LYS n 1 92 VAL n 1 93 SER n 1 94 ASP n 1 95 TYR n 1 96 GLY n 1 97 GLY n 1 98 ASN n 1 99 GLU n 1 100 ARG n 1 101 SER n 1 102 VAL n 1 103 GLU n 1 104 VAL n 1 105 GLU n 1 106 THR n 1 107 THR n 1 108 GLY n 1 109 TRP n 1 110 LEU n 1 111 GLU n 1 112 TRP n 1 113 LYS n 1 114 ASN n 1 115 PRO n 1 116 GLU n 1 117 ILE n 1 118 ARG n 1 119 ASN n 1 120 ILE n 1 121 LYS n 1 122 VAL n 1 123 GLU n 1 124 THR n 1 125 GLY n 1 126 ARG n 1 127 ILE n 1 128 LYS n 1 129 ILE n 1 130 THR n 1 131 VAL n 1 132 SER n 1 133 VAL n 1 134 GLU n 1 135 GLY n 1 136 ARG n 1 137 ALA n 1 138 GLY n 1 139 ASP n 1 140 TRP n 1 141 GLY n 1 142 PHE n 1 143 ILE n 1 144 ASP n 1 145 ASP n 1 146 PHE n 1 147 TYR n 1 148 LEU n 1 149 PHE n 1 150 ARG n 1 151 GLU n 1 152 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain MS8B _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'THERMOTOGA MARITIMA' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 2336 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc 43589 _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PCBM61 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q9X0S8_THEMA _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession Q9X0S8 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2XOM _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 7 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 152 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9X0S8 _struct_ref_seq.db_align_beg 461 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 606 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 21 _struct_ref_seq.pdbx_auth_seq_align_end 166 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2XOM GLY A 1 ? UNP Q9X0S8 ? ? 'expression tag' 15 1 1 2XOM SER A 2 ? UNP Q9X0S8 ? ? 'expression tag' 16 2 1 2XOM HIS A 3 ? UNP Q9X0S8 ? ? 'expression tag' 17 3 1 2XOM MET A 4 ? UNP Q9X0S8 ? ? 'expression tag' 18 4 1 2XOM ALA A 5 ? UNP Q9X0S8 ? ? 'expression tag' 19 5 1 2XOM SER A 6 ? UNP Q9X0S8 ? ? 'expression tag' 20 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 GAL 'D-saccharide, beta linking' . beta-D-galactopyranose ? 'C6 H12 O6' 180.156 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2XOM _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.04 _exptl_crystal.density_percent_sol 39.85 _exptl_crystal.description NONE # _diffrn.id 1 _diffrn.ambient_temp 113 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97946 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SSRL BEAMLINE BL9-2' _diffrn_source.pdbx_synchrotron_site SSRL _diffrn_source.pdbx_synchrotron_beamline BL9-2 _diffrn_source.pdbx_wavelength 0.97946 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2XOM _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 20.00 _reflns.d_resolution_high 0.95 _reflns.number_obs 77217 _reflns.number_all ? _reflns.percent_possible_obs 92.5 _reflns.pdbx_Rmerge_I_obs 0.04 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 26.60 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 6.4 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 0.95 _reflns_shell.d_res_low 1.00 _reflns_shell.percent_possible_all 68.4 _reflns_shell.Rmerge_I_obs 0.21 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 5.40 _reflns_shell.pdbx_redundancy 3.8 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2XOM _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 77217 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 17.74 _refine.ls_d_res_high 0.95 _refine.ls_percent_reflns_obs 92.46 _refine.ls_R_factor_obs 0.10458 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.10381 _refine.ls_R_factor_R_free 0.11970 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 4089 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.983 _refine.correlation_coeff_Fo_to_Fc_free 0.979 _refine.B_iso_mean 7.192 _refine.aniso_B[1][1] 0.02 _refine.aniso_B[2][2] -0.03 _refine.aniso_B[3][3] -0.05 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] -0.04 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. U VALUES REFINED INDIVIDUALLY.' _refine.pdbx_starting_model NONE _refine.pdbx_method_to_determine_struct 'DIRECT METHODS' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.017 _refine.pdbx_overall_ESU_R_Free 0.017 _refine.overall_SU_ML 0.009 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 0.331 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1171 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 35 _refine_hist.number_atoms_solvent 284 _refine_hist.number_atoms_total 1490 _refine_hist.d_res_high 0.95 _refine_hist.d_res_low 17.74 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.021 0.022 ? 1387 'X-RAY DIFFRACTION' ? r_bond_other_d 0.002 0.020 ? 974 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2.025 1.974 ? 1917 'X-RAY DIFFRACTION' ? r_angle_other_deg 1.057 3.000 ? 2382 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 7.121 5.000 ? 186 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 35.514 24.366 ? 71 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 14.310 15.000 ? 241 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 18.564 15.000 ? 9 'X-RAY DIFFRACTION' ? r_chiral_restr 0.128 0.200 ? 212 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.010 0.020 ? 1554 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.002 0.020 ? 297 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.650 1.500 ? 783 'X-RAY DIFFRACTION' ? r_mcbond_other 0.816 1.500 ? 322 'X-RAY DIFFRACTION' ? r_mcangle_it 2.514 2.000 ? 1289 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 2.942 3.000 ? 604 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 3.995 4.500 ? 605 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr 1.363 3.000 ? 2361 'X-RAY DIFFRACTION' ? r_sphericity_free 10.361 3.000 ? 286 'X-RAY DIFFRACTION' ? r_sphericity_bonded 4.409 3.000 ? 2303 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 0.950 _refine_ls_shell.d_res_low 0.975 _refine_ls_shell.number_reflns_R_work 3524 _refine_ls_shell.R_factor_R_work 0.213 _refine_ls_shell.percent_reflns_obs 58.00 _refine_ls_shell.R_factor_R_free 0.231 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 222 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 2XOM _struct.title 'Atomic resolution structure of TmCBM61 in complex with beta-1,4- galactotriose' _struct.pdbx_descriptor 'ARABINOGALACTAN ENDO-1,4-BETA-GALACTOSIDASE' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2XOM _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'HYDROLASE, GALACTAN, CARBOHYDRATE-BINDING MODULE, GLYCOSIDE HYDROLASE, BETA-SANDWICH.' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id PRO _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 40 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id ALA _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 44 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id PRO _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 54 _struct_conf.end_auth_comp_id ALA _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 58 _struct_conf.pdbx_PDB_helix_class 5 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B GAL . O4 A ? ? 1_555 B GAL . C1 ? ? B GAL 1 B GAL 2 1_555 ? ? ? ? ? ? ? 1.401 ? ? covale2 covale both ? B GAL . O4 B ? ? 1_555 B GAL . C1 ? ? B GAL 1 B GAL 2 1_555 ? ? ? ? ? ? ? 1.407 ? ? covale3 covale both ? B GAL . O4 ? ? ? 1_555 B GAL . C1 ? ? B GAL 2 B GAL 3 1_555 ? ? ? ? ? ? ? 1.377 ? ? metalc1 metalc ? ? A GLY 15 O ? ? ? 1_555 C CA . CA ? ? A GLY 29 A CA 1169 1_555 ? ? ? ? ? ? ? 2.412 ? ? metalc2 metalc ? ? A GLU 17 OE2 ? ? ? 1_555 C CA . CA ? ? A GLU 31 A CA 1169 1_555 ? ? ? ? ? ? ? 2.335 ? ? metalc3 metalc ? ? A GLN 46 O ? ? ? 1_555 C CA . CA ? ? A GLN 60 A CA 1169 1_555 ? ? ? ? ? ? ? 2.394 ? ? metalc4 metalc ? ? A GLN 46 OE1 ? ? ? 1_555 C CA . CA ? ? A GLN 60 A CA 1169 1_555 ? ? ? ? ? ? ? 2.332 ? ? metalc5 metalc ? ? A TYR 49 O ? ? ? 1_555 C CA . CA ? ? A TYR 63 A CA 1169 1_555 ? ? ? ? ? ? ? 2.319 ? ? metalc6 metalc ? ? A ASP 144 OD1 ? ? ? 1_555 C CA . CA ? ? A ASP 158 A CA 1169 1_555 ? ? ? ? ? ? ? 2.669 ? ? metalc7 metalc ? ? A ASP 144 OD2 ? ? ? 1_555 C CA . CA ? ? A ASP 158 A CA 1169 1_555 ? ? ? ? ? ? ? 2.442 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 SER 22 A . ? SER 36 A PRO 23 A ? PRO 37 A 1 3.26 2 ASN 39 A . ? ASN 53 A PRO 40 A ? PRO 54 A 1 2.56 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 5 ? AB ? 5 ? AC ? 5 ? AD ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? anti-parallel AA 3 4 ? anti-parallel AA 4 5 ? anti-parallel AB 1 2 ? anti-parallel AB 2 3 ? anti-parallel AB 3 4 ? anti-parallel AB 4 5 ? anti-parallel AC 1 2 ? anti-parallel AC 2 3 ? anti-parallel AC 3 4 ? anti-parallel AC 4 5 ? anti-parallel AD 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 ARG A 25 ? GLY A 28 ? ARG A 39 GLY A 42 AA 2 PHE A 59 ? GLU A 68 ? PHE A 73 GLU A 82 AA 3 ARG A 126 ? GLY A 135 ? ARG A 140 GLY A 149 AA 4 LYS A 87 ? SER A 93 ? LYS A 101 SER A 107 AA 5 ARG A 100 ? GLU A 105 ? ARG A 114 GLU A 119 AB 1 VAL A 33 ? LYS A 37 ? VAL A 47 LYS A 51 AB 2 TYR A 49 ? TRP A 54 ? TYR A 63 TRP A 68 AB 3 TRP A 140 ? ARG A 150 ? TRP A 154 ARG A 164 AB 4 GLY A 72 ? GLY A 82 ? GLY A 86 GLY A 96 AB 5 GLY A 108 ? LYS A 113 ? GLY A 122 LYS A 127 AC 1 VAL A 33 ? LYS A 37 ? VAL A 47 LYS A 51 AC 2 TYR A 49 ? TRP A 54 ? TYR A 63 TRP A 68 AC 3 TRP A 140 ? ARG A 150 ? TRP A 154 ARG A 164 AC 4 GLY A 72 ? GLY A 82 ? GLY A 86 GLY A 96 AC 5 GLU A 116 ? VAL A 122 ? GLU A 130 VAL A 136 AD 1 GLY A 108 ? LYS A 113 ? GLY A 122 LYS A 127 AD 2 GLY A 72 ? GLY A 82 ? GLY A 86 GLY A 96 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N SER A 27 ? N SER A 41 O GLU A 62 ? O GLU A 76 AA 2 3 N VAL A 67 ? N VAL A 81 O ILE A 127 ? O ILE A 141 AA 3 4 N GLU A 134 ? N GLU A 148 O LYS A 87 ? O LYS A 101 AA 4 5 N VAL A 92 ? N VAL A 106 O ARG A 100 ? O ARG A 114 AB 1 2 N VAL A 36 ? N VAL A 50 O ALA A 50 ? O ALA A 64 AB 2 3 N PHE A 53 ? N PHE A 67 O GLY A 141 ? O GLY A 155 AB 3 4 N PHE A 149 ? N PHE A 163 O ARG A 75 ? O ARG A 89 AB 4 5 O GLY A 82 ? O GLY A 96 N GLY A 108 ? N GLY A 122 AC 1 2 N VAL A 36 ? N VAL A 50 O ALA A 50 ? O ALA A 64 AC 2 3 N PHE A 53 ? N PHE A 67 O GLY A 141 ? O GLY A 155 AC 3 4 N PHE A 149 ? N PHE A 163 O ARG A 75 ? O ARG A 89 AC 4 5 N VAL A 76 ? N VAL A 90 O ILE A 117 ? O ILE A 131 AD 1 2 N LYS A 113 ? N LYS A 127 O THR A 80 ? O THR A 94 # _database_PDB_matrix.entry_id 2XOM _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2XOM _atom_sites.fract_transf_matrix[1][1] 0.012061 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.009518 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.031328 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.018792 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CA N O # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 15 ? ? ? A . n A 1 2 SER 2 16 ? ? ? A . n A 1 3 HIS 3 17 ? ? ? A . n A 1 4 MET 4 18 ? ? ? A . n A 1 5 ALA 5 19 ? ? ? A . n A 1 6 SER 6 20 ? ? ? A . n A 1 7 SER 7 21 21 SER SER A . n A 1 8 ARG 8 22 22 ARG ARG A . n A 1 9 ASN 9 23 23 ASN ASN A . n A 1 10 TYR 10 24 24 TYR TYR A . n A 1 11 LEU 11 25 25 LEU LEU A . n A 1 12 LYS 12 26 26 LYS LYS A . n A 1 13 ASN 13 27 27 ASN ASN A . n A 1 14 PRO 14 28 28 PRO PRO A . n A 1 15 GLY 15 29 29 GLY GLY A . n A 1 16 PHE 16 30 30 PHE PHE A . n A 1 17 GLU 17 31 31 GLU GLU A . n A 1 18 THR 18 32 32 THR THR A . n A 1 19 GLY 19 33 33 GLY GLY A . n A 1 20 GLU 20 34 34 GLU GLU A . n A 1 21 PHE 21 35 35 PHE PHE A . n A 1 22 SER 22 36 36 SER SER A . n A 1 23 PRO 23 37 37 PRO PRO A . n A 1 24 TRP 24 38 38 TRP TRP A . n A 1 25 ARG 25 39 39 ARG ARG A . n A 1 26 VAL 26 40 40 VAL VAL A . n A 1 27 SER 27 41 41 SER SER A . n A 1 28 GLY 28 42 42 GLY GLY A . n A 1 29 ASP 29 43 43 ASP ASP A . n A 1 30 LYS 30 44 44 LYS LYS A . n A 1 31 LYS 31 45 45 LYS LYS A . n A 1 32 ALA 32 46 46 ALA ALA A . n A 1 33 VAL 33 47 47 VAL VAL A . n A 1 34 LYS 34 48 48 LYS LYS A . n A 1 35 VAL 35 49 49 VAL VAL A . n A 1 36 VAL 36 50 50 VAL VAL A . n A 1 37 LYS 37 51 51 LYS LYS A . n A 1 38 ALA 38 52 52 ALA ALA A . n A 1 39 ASN 39 53 53 ASN ASN A . n A 1 40 PRO 40 54 54 PRO PRO A . n A 1 41 SER 41 55 55 SER SER A . n A 1 42 SER 42 56 56 SER SER A . n A 1 43 ASN 43 57 57 ASN ASN A . n A 1 44 ALA 44 58 58 ALA ALA A . n A 1 45 HIS 45 59 59 HIS HIS A . n A 1 46 GLN 46 60 60 GLN GLN A . n A 1 47 GLY 47 61 61 GLY GLY A . n A 1 48 GLU 48 62 62 GLU GLU A . n A 1 49 TYR 49 63 63 TYR TYR A . n A 1 50 ALA 50 64 64 ALA ALA A . n A 1 51 VAL 51 65 65 VAL VAL A . n A 1 52 ASN 52 66 66 ASN ASN A . n A 1 53 PHE 53 67 67 PHE PHE A . n A 1 54 TRP 54 68 68 TRP TRP A . n A 1 55 LEU 55 69 69 LEU LEU A . n A 1 56 ASP 56 70 70 ASP ASP A . n A 1 57 GLU 57 71 71 GLU GLU A . n A 1 58 SER 58 72 72 SER SER A . n A 1 59 PHE 59 73 73 PHE PHE A . n A 1 60 SER 60 74 74 SER SER A . n A 1 61 PHE 61 75 75 PHE PHE A . n A 1 62 GLU 62 76 76 GLU GLU A . n A 1 63 LEU 63 77 77 LEU LEU A . n A 1 64 SER 64 78 78 SER SER A . n A 1 65 GLN 65 79 79 GLN GLN A . n A 1 66 GLU 66 80 80 GLU GLU A . n A 1 67 VAL 67 81 81 VAL VAL A . n A 1 68 GLU 68 82 82 GLU GLU A . n A 1 69 LEU 69 83 83 LEU LEU A . n A 1 70 PRO 70 84 84 PRO PRO A . n A 1 71 ALA 71 85 85 ALA ALA A . n A 1 72 GLY 72 86 86 GLY GLY A . n A 1 73 VAL 73 87 87 VAL VAL A . n A 1 74 TYR 74 88 88 TYR TYR A . n A 1 75 ARG 75 89 89 ARG ARG A . n A 1 76 VAL 76 90 90 VAL VAL A . n A 1 77 GLY 77 91 91 GLY GLY A . n A 1 78 PHE 78 92 92 PHE PHE A . n A 1 79 TRP 79 93 93 TRP TRP A . n A 1 80 THR 80 94 94 THR THR A . n A 1 81 HIS 81 95 95 HIS HIS A . n A 1 82 GLY 82 96 96 GLY GLY A . n A 1 83 GLU 83 97 97 GLU GLU A . n A 1 84 LYS 84 98 98 LYS LYS A . n A 1 85 GLY 85 99 99 GLY GLY A . n A 1 86 VAL 86 100 100 VAL VAL A . n A 1 87 LYS 87 101 101 LYS LYS A . n A 1 88 ILE 88 102 102 ILE ILE A . n A 1 89 ALA 89 103 103 ALA ALA A . n A 1 90 LEU 90 104 104 LEU LEU A . n A 1 91 LYS 91 105 105 LYS LYS A . n A 1 92 VAL 92 106 106 VAL VAL A . n A 1 93 SER 93 107 107 SER SER A . n A 1 94 ASP 94 108 108 ASP ASP A . n A 1 95 TYR 95 109 109 TYR TYR A . n A 1 96 GLY 96 110 110 GLY GLY A . n A 1 97 GLY 97 111 111 GLY GLY A . n A 1 98 ASN 98 112 112 ASN ASN A . n A 1 99 GLU 99 113 113 GLU GLU A . n A 1 100 ARG 100 114 114 ARG ARG A . n A 1 101 SER 101 115 115 SER SER A . n A 1 102 VAL 102 116 116 VAL VAL A . n A 1 103 GLU 103 117 117 GLU GLU A . n A 1 104 VAL 104 118 118 VAL VAL A . n A 1 105 GLU 105 119 119 GLU GLU A . n A 1 106 THR 106 120 120 THR THR A . n A 1 107 THR 107 121 121 THR THR A . n A 1 108 GLY 108 122 122 GLY GLY A . n A 1 109 TRP 109 123 123 TRP TRP A . n A 1 110 LEU 110 124 124 LEU LEU A . n A 1 111 GLU 111 125 125 GLU GLU A . n A 1 112 TRP 112 126 126 TRP TRP A . n A 1 113 LYS 113 127 127 LYS LYS A . n A 1 114 ASN 114 128 128 ASN ASN A . n A 1 115 PRO 115 129 129 PRO PRO A . n A 1 116 GLU 116 130 130 GLU GLU A . n A 1 117 ILE 117 131 131 ILE ILE A . n A 1 118 ARG 118 132 132 ARG ARG A . n A 1 119 ASN 119 133 133 ASN ASN A . n A 1 120 ILE 120 134 134 ILE ILE A . n A 1 121 LYS 121 135 135 LYS LYS A . n A 1 122 VAL 122 136 136 VAL VAL A . n A 1 123 GLU 123 137 137 GLU GLU A . n A 1 124 THR 124 138 138 THR THR A . n A 1 125 GLY 125 139 139 GLY GLY A . n A 1 126 ARG 126 140 140 ARG ARG A . n A 1 127 ILE 127 141 141 ILE ILE A . n A 1 128 LYS 128 142 142 LYS LYS A . n A 1 129 ILE 129 143 143 ILE ILE A . n A 1 130 THR 130 144 144 THR THR A . n A 1 131 VAL 131 145 145 VAL VAL A . n A 1 132 SER 132 146 146 SER SER A . n A 1 133 VAL 133 147 147 VAL VAL A . n A 1 134 GLU 134 148 148 GLU GLU A . n A 1 135 GLY 135 149 149 GLY GLY A . n A 1 136 ARG 136 150 150 ARG ARG A . n A 1 137 ALA 137 151 151 ALA ALA A . n A 1 138 GLY 138 152 152 GLY GLY A . n A 1 139 ASP 139 153 153 ASP ASP A . n A 1 140 TRP 140 154 154 TRP TRP A . n A 1 141 GLY 141 155 155 GLY GLY A . n A 1 142 PHE 142 156 156 PHE PHE A . n A 1 143 ILE 143 157 157 ILE ILE A . n A 1 144 ASP 144 158 158 ASP ASP A . n A 1 145 ASP 145 159 159 ASP ASP A . n A 1 146 PHE 146 160 160 PHE PHE A . n A 1 147 TYR 147 161 161 TYR TYR A . n A 1 148 LEU 148 162 162 LEU LEU A . n A 1 149 PHE 149 163 163 PHE PHE A . n A 1 150 ARG 150 164 164 ARG ARG A . n A 1 151 GLU 151 165 165 GLU GLU A . n A 1 152 GLU 152 166 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA 1 1169 1169 CA CA A . D 4 HOH 1 2001 2001 HOH HOH A . D 4 HOH 2 2002 2002 HOH HOH A . D 4 HOH 3 2003 2003 HOH HOH A . D 4 HOH 4 2004 2004 HOH HOH A . D 4 HOH 5 2005 2005 HOH HOH A . D 4 HOH 6 2006 2006 HOH HOH A . D 4 HOH 7 2007 2007 HOH HOH A . D 4 HOH 8 2008 2008 HOH HOH A . D 4 HOH 9 2009 2009 HOH HOH A . D 4 HOH 10 2010 2010 HOH HOH A . D 4 HOH 11 2011 2011 HOH HOH A . D 4 HOH 12 2012 2012 HOH HOH A . D 4 HOH 13 2013 2013 HOH HOH A . D 4 HOH 14 2014 2014 HOH HOH A . D 4 HOH 15 2015 2015 HOH HOH A . D 4 HOH 16 2016 2016 HOH HOH A . D 4 HOH 17 2017 2017 HOH HOH A . D 4 HOH 18 2018 2018 HOH HOH A . D 4 HOH 19 2019 2019 HOH HOH A . D 4 HOH 20 2020 2020 HOH HOH A . D 4 HOH 21 2021 2021 HOH HOH A . D 4 HOH 22 2022 2022 HOH HOH A . D 4 HOH 23 2023 2023 HOH HOH A . D 4 HOH 24 2024 2024 HOH HOH A . D 4 HOH 25 2025 2025 HOH HOH A . D 4 HOH 26 2026 2026 HOH HOH A . D 4 HOH 27 2027 2027 HOH HOH A . D 4 HOH 28 2028 2028 HOH HOH A . D 4 HOH 29 2029 2029 HOH HOH A . D 4 HOH 30 2030 2030 HOH HOH A . D 4 HOH 31 2031 2031 HOH HOH A . D 4 HOH 32 2032 2032 HOH HOH A . D 4 HOH 33 2033 2033 HOH HOH A . D 4 HOH 34 2034 2034 HOH HOH A . D 4 HOH 35 2035 2035 HOH HOH A . D 4 HOH 36 2036 2036 HOH HOH A . D 4 HOH 37 2037 2037 HOH HOH A . D 4 HOH 38 2038 2038 HOH HOH A . D 4 HOH 39 2039 2039 HOH HOH A . D 4 HOH 40 2040 2040 HOH HOH A . D 4 HOH 41 2041 2041 HOH HOH A . D 4 HOH 42 2042 2042 HOH HOH A . D 4 HOH 43 2043 2043 HOH HOH A . D 4 HOH 44 2044 2044 HOH HOH A . D 4 HOH 45 2045 2045 HOH HOH A . D 4 HOH 46 2046 2046 HOH HOH A . D 4 HOH 47 2047 2047 HOH HOH A . D 4 HOH 48 2048 2048 HOH HOH A . D 4 HOH 49 2049 2049 HOH HOH A . D 4 HOH 50 2050 2050 HOH HOH A . D 4 HOH 51 2051 2051 HOH HOH A . D 4 HOH 52 2052 2052 HOH HOH A . D 4 HOH 53 2053 2053 HOH HOH A . D 4 HOH 54 2054 2054 HOH HOH A . D 4 HOH 55 2055 2055 HOH HOH A . D 4 HOH 56 2056 2056 HOH HOH A . D 4 HOH 57 2057 2057 HOH HOH A . D 4 HOH 58 2058 2058 HOH HOH A . D 4 HOH 59 2059 2059 HOH HOH A . D 4 HOH 60 2060 2060 HOH HOH A . D 4 HOH 61 2061 2061 HOH HOH A . D 4 HOH 62 2062 2062 HOH HOH A . D 4 HOH 63 2063 2063 HOH HOH A . D 4 HOH 64 2064 2064 HOH HOH A . D 4 HOH 65 2065 2065 HOH HOH A . D 4 HOH 66 2066 2066 HOH HOH A . D 4 HOH 67 2067 2067 HOH HOH A . D 4 HOH 68 2068 2068 HOH HOH A . D 4 HOH 69 2069 2069 HOH HOH A . D 4 HOH 70 2070 2070 HOH HOH A . D 4 HOH 71 2071 2071 HOH HOH A . D 4 HOH 72 2072 2072 HOH HOH A . D 4 HOH 73 2073 2073 HOH HOH A . D 4 HOH 74 2074 2074 HOH HOH A . D 4 HOH 75 2075 2075 HOH HOH A . D 4 HOH 76 2076 2076 HOH HOH A . D 4 HOH 77 2077 2077 HOH HOH A . D 4 HOH 78 2078 2078 HOH HOH A . D 4 HOH 79 2079 2079 HOH HOH A . D 4 HOH 80 2080 2080 HOH HOH A . D 4 HOH 81 2081 2081 HOH HOH A . D 4 HOH 82 2082 2082 HOH HOH A . D 4 HOH 83 2083 2083 HOH HOH A . D 4 HOH 84 2084 2084 HOH HOH A . D 4 HOH 85 2085 2085 HOH HOH A . D 4 HOH 86 2086 2086 HOH HOH A . D 4 HOH 87 2087 2087 HOH HOH A . D 4 HOH 88 2088 2088 HOH HOH A . D 4 HOH 89 2089 2089 HOH HOH A . D 4 HOH 90 2090 2090 HOH HOH A . D 4 HOH 91 2091 2091 HOH HOH A . D 4 HOH 92 2092 2092 HOH HOH A . D 4 HOH 93 2093 2093 HOH HOH A . D 4 HOH 94 2094 2094 HOH HOH A . D 4 HOH 95 2095 2095 HOH HOH A . D 4 HOH 96 2096 2096 HOH HOH A . D 4 HOH 97 2097 2097 HOH HOH A . D 4 HOH 98 2098 2098 HOH HOH A . D 4 HOH 99 2099 2099 HOH HOH A . D 4 HOH 100 2100 2100 HOH HOH A . D 4 HOH 101 2101 2101 HOH HOH A . D 4 HOH 102 2102 2102 HOH HOH A . D 4 HOH 103 2103 2103 HOH HOH A . D 4 HOH 104 2104 2104 HOH HOH A . D 4 HOH 105 2105 2105 HOH HOH A . D 4 HOH 106 2106 2106 HOH HOH A . D 4 HOH 107 2107 2107 HOH HOH A . D 4 HOH 108 2108 2108 HOH HOH A . D 4 HOH 109 2109 2109 HOH HOH A . D 4 HOH 110 2110 2110 HOH HOH A . D 4 HOH 111 2111 2111 HOH HOH A . D 4 HOH 112 2112 2112 HOH HOH A . D 4 HOH 113 2113 2113 HOH HOH A . D 4 HOH 114 2114 2114 HOH HOH A . D 4 HOH 115 2115 2115 HOH HOH A . D 4 HOH 116 2116 2116 HOH HOH A . D 4 HOH 117 2117 2117 HOH HOH A . D 4 HOH 118 2118 2118 HOH HOH A . D 4 HOH 119 2119 2119 HOH HOH A . D 4 HOH 120 2120 2120 HOH HOH A . D 4 HOH 121 2121 2121 HOH HOH A . D 4 HOH 122 2122 2122 HOH HOH A . D 4 HOH 123 2123 2123 HOH HOH A . D 4 HOH 124 2124 2124 HOH HOH A . D 4 HOH 125 2125 2125 HOH HOH A . D 4 HOH 126 2126 2126 HOH HOH A . D 4 HOH 127 2127 2127 HOH HOH A . D 4 HOH 128 2128 2128 HOH HOH A . D 4 HOH 129 2129 2129 HOH HOH A . D 4 HOH 130 2130 2130 HOH HOH A . D 4 HOH 131 2131 2131 HOH HOH A . D 4 HOH 132 2132 2132 HOH HOH A . D 4 HOH 133 2133 2133 HOH HOH A . D 4 HOH 134 2134 2134 HOH HOH A . D 4 HOH 135 2135 2135 HOH HOH A . D 4 HOH 136 2136 2136 HOH HOH A . D 4 HOH 137 2137 2137 HOH HOH A . D 4 HOH 138 2138 2138 HOH HOH A . D 4 HOH 139 2139 2139 HOH HOH A . D 4 HOH 140 2140 2140 HOH HOH A . D 4 HOH 141 2141 2141 HOH HOH A . D 4 HOH 142 2142 2142 HOH HOH A . D 4 HOH 143 2143 2143 HOH HOH A . D 4 HOH 144 2144 2144 HOH HOH A . D 4 HOH 145 2145 2145 HOH HOH A . D 4 HOH 146 2146 2146 HOH HOH A . D 4 HOH 147 2147 2147 HOH HOH A . D 4 HOH 148 2148 2148 HOH HOH A . D 4 HOH 149 2149 2149 HOH HOH A . D 4 HOH 150 2150 2150 HOH HOH A . D 4 HOH 151 2151 2151 HOH HOH A . D 4 HOH 152 2152 2152 HOH HOH A . D 4 HOH 153 2153 2153 HOH HOH A . D 4 HOH 154 2154 2154 HOH HOH A . D 4 HOH 155 2155 2155 HOH HOH A . D 4 HOH 156 2156 2156 HOH HOH A . D 4 HOH 157 2157 2157 HOH HOH A . D 4 HOH 158 2158 2158 HOH HOH A . D 4 HOH 159 2159 2159 HOH HOH A . D 4 HOH 160 2160 2160 HOH HOH A . D 4 HOH 161 2161 2161 HOH HOH A . D 4 HOH 162 2162 2162 HOH HOH A . D 4 HOH 163 2163 2163 HOH HOH A . D 4 HOH 164 2164 2164 HOH HOH A . D 4 HOH 165 2165 2165 HOH HOH A . D 4 HOH 166 2166 2166 HOH HOH A . D 4 HOH 167 2167 2167 HOH HOH A . D 4 HOH 168 2168 2168 HOH HOH A . D 4 HOH 169 2169 2169 HOH HOH A . D 4 HOH 170 2170 2170 HOH HOH A . D 4 HOH 171 2171 2171 HOH HOH A . D 4 HOH 172 2172 2172 HOH HOH A . D 4 HOH 173 2173 2173 HOH HOH A . D 4 HOH 174 2174 2174 HOH HOH A . D 4 HOH 175 2175 2175 HOH HOH A . D 4 HOH 176 2176 2176 HOH HOH A . D 4 HOH 177 2177 2177 HOH HOH A . D 4 HOH 178 2178 2178 HOH HOH A . D 4 HOH 179 2179 2179 HOH HOH A . D 4 HOH 180 2180 2180 HOH HOH A . D 4 HOH 181 2181 2181 HOH HOH A . D 4 HOH 182 2182 2182 HOH HOH A . D 4 HOH 183 2183 2183 HOH HOH A . D 4 HOH 184 2184 2184 HOH HOH A . D 4 HOH 185 2185 2185 HOH HOH A . D 4 HOH 186 2186 2186 HOH HOH A . D 4 HOH 187 2187 2187 HOH HOH A . D 4 HOH 188 2188 2188 HOH HOH A . D 4 HOH 189 2189 2189 HOH HOH A . D 4 HOH 190 2190 2190 HOH HOH A . D 4 HOH 191 2191 2191 HOH HOH A . D 4 HOH 192 2192 2192 HOH HOH A . D 4 HOH 193 2193 2193 HOH HOH A . D 4 HOH 194 2194 2194 HOH HOH A . D 4 HOH 195 2195 2195 HOH HOH A . D 4 HOH 196 2196 2196 HOH HOH A . D 4 HOH 197 2197 2197 HOH HOH A . D 4 HOH 198 2198 2198 HOH HOH A . D 4 HOH 199 2199 2199 HOH HOH A . D 4 HOH 200 2200 2200 HOH HOH A . D 4 HOH 201 2201 2201 HOH HOH A . D 4 HOH 202 2202 2202 HOH HOH A . D 4 HOH 203 2203 2203 HOH HOH A . D 4 HOH 204 2204 2204 HOH HOH A . D 4 HOH 205 2205 2205 HOH HOH A . D 4 HOH 206 2206 2206 HOH HOH A . D 4 HOH 207 2207 2207 HOH HOH A . D 4 HOH 208 2208 2208 HOH HOH A . D 4 HOH 209 2209 2209 HOH HOH A . D 4 HOH 210 2210 2210 HOH HOH A . D 4 HOH 211 2211 2211 HOH HOH A . D 4 HOH 212 2212 2212 HOH HOH A . D 4 HOH 213 2213 2213 HOH HOH A . D 4 HOH 214 2214 2214 HOH HOH A . D 4 HOH 215 2215 2215 HOH HOH A . D 4 HOH 216 2216 2216 HOH HOH A . D 4 HOH 217 2217 2217 HOH HOH A . D 4 HOH 218 2218 2218 HOH HOH A . D 4 HOH 219 2219 2219 HOH HOH A . D 4 HOH 220 2220 2220 HOH HOH A . D 4 HOH 221 2221 2221 HOH HOH A . D 4 HOH 222 2222 2222 HOH HOH A . D 4 HOH 223 2223 2223 HOH HOH A . D 4 HOH 224 2224 2224 HOH HOH A . D 4 HOH 225 2225 2225 HOH HOH A . D 4 HOH 226 2226 2226 HOH HOH A . D 4 HOH 227 2227 2227 HOH HOH A . D 4 HOH 228 2228 2228 HOH HOH A . D 4 HOH 229 2229 2229 HOH HOH A . D 4 HOH 230 2230 2230 HOH HOH A . D 4 HOH 231 2231 2231 HOH HOH A . D 4 HOH 232 2232 2232 HOH HOH A . D 4 HOH 233 2233 2233 HOH HOH A . D 4 HOH 234 2234 2234 HOH HOH A . D 4 HOH 235 2235 2235 HOH HOH A . D 4 HOH 236 2236 2236 HOH HOH A . D 4 HOH 237 2237 2237 HOH HOH A . D 4 HOH 238 2238 2238 HOH HOH A . D 4 HOH 239 2239 2239 HOH HOH A . D 4 HOH 240 2240 2240 HOH HOH A . D 4 HOH 241 2241 2241 HOH HOH A . D 4 HOH 242 2242 2242 HOH HOH A . D 4 HOH 243 2243 2243 HOH HOH A . D 4 HOH 244 2244 2244 HOH HOH A . D 4 HOH 245 2245 2245 HOH HOH A . D 4 HOH 246 2246 2246 HOH HOH A . D 4 HOH 247 2247 2247 HOH HOH A . D 4 HOH 248 2248 2248 HOH HOH A . D 4 HOH 249 2249 2249 HOH HOH A . D 4 HOH 250 2250 2250 HOH HOH A . D 4 HOH 251 2251 2251 HOH HOH A . D 4 HOH 252 2252 2252 HOH HOH A . D 4 HOH 253 2253 2253 HOH HOH A . D 4 HOH 254 2254 2254 HOH HOH A . D 4 HOH 255 2255 2255 HOH HOH A . D 4 HOH 256 2256 2256 HOH HOH A . D 4 HOH 257 2257 2257 HOH HOH A . D 4 HOH 258 2258 2258 HOH HOH A . D 4 HOH 259 2259 2259 HOH HOH A . D 4 HOH 260 2260 2260 HOH HOH A . D 4 HOH 261 2261 2261 HOH HOH A . D 4 HOH 262 2262 2262 HOH HOH A . D 4 HOH 263 2263 2263 HOH HOH A . D 4 HOH 264 2264 2264 HOH HOH A . D 4 HOH 265 2265 2265 HOH HOH A . D 4 HOH 266 2266 2266 HOH HOH A . D 4 HOH 267 2267 2267 HOH HOH A . D 4 HOH 268 2268 2268 HOH HOH A . D 4 HOH 269 2269 2269 HOH HOH A . D 4 HOH 270 2270 2270 HOH HOH A . D 4 HOH 271 2271 2271 HOH HOH A . D 4 HOH 272 2272 2272 HOH HOH A . D 4 HOH 273 2273 2273 HOH HOH A . D 4 HOH 274 2274 2274 HOH HOH A . D 4 HOH 275 2275 2275 HOH HOH A . D 4 HOH 276 2276 2276 HOH HOH A . D 4 HOH 277 2277 2277 HOH HOH A . D 4 HOH 278 2278 2278 HOH HOH A . D 4 HOH 279 2279 2279 HOH HOH A . D 4 HOH 280 2280 2280 HOH HOH A . D 4 HOH 281 2281 2281 HOH HOH A . D 4 HOH 282 2282 2282 HOH HOH A . D 4 HOH 283 2283 2283 HOH HOH A . D 4 HOH 284 2284 2284 HOH HOH A . # _pdbx_molecule_features.prd_id PRD_900114 _pdbx_molecule_features.name 4beta-beta-galactotriose _pdbx_molecule_features.type Oligosaccharide _pdbx_molecule_features.class Metabolism _pdbx_molecule_features.details oligosaccharide # _pdbx_molecule.instance_id 1 _pdbx_molecule.prd_id PRD_900114 _pdbx_molecule.asym_id B # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? A GLY 15 ? A GLY 29 ? 1_555 CA ? C CA . ? A CA 1169 ? 1_555 OE2 ? A GLU 17 ? A GLU 31 ? 1_555 81.5 ? 2 O ? A GLY 15 ? A GLY 29 ? 1_555 CA ? C CA . ? A CA 1169 ? 1_555 O ? A GLN 46 ? A GLN 60 ? 1_555 159.0 ? 3 OE2 ? A GLU 17 ? A GLU 31 ? 1_555 CA ? C CA . ? A CA 1169 ? 1_555 O ? A GLN 46 ? A GLN 60 ? 1_555 83.4 ? 4 O ? A GLY 15 ? A GLY 29 ? 1_555 CA ? C CA . ? A CA 1169 ? 1_555 OE1 ? A GLN 46 ? A GLN 60 ? 1_555 88.2 ? 5 OE2 ? A GLU 17 ? A GLU 31 ? 1_555 CA ? C CA . ? A CA 1169 ? 1_555 OE1 ? A GLN 46 ? A GLN 60 ? 1_555 89.5 ? 6 O ? A GLN 46 ? A GLN 60 ? 1_555 CA ? C CA . ? A CA 1169 ? 1_555 OE1 ? A GLN 46 ? A GLN 60 ? 1_555 77.2 ? 7 O ? A GLY 15 ? A GLY 29 ? 1_555 CA ? C CA . ? A CA 1169 ? 1_555 O ? A TYR 49 ? A TYR 63 ? 1_555 88.7 ? 8 OE2 ? A GLU 17 ? A GLU 31 ? 1_555 CA ? C CA . ? A CA 1169 ? 1_555 O ? A TYR 49 ? A TYR 63 ? 1_555 84.2 ? 9 O ? A GLN 46 ? A GLN 60 ? 1_555 CA ? C CA . ? A CA 1169 ? 1_555 O ? A TYR 49 ? A TYR 63 ? 1_555 104.2 ? 10 OE1 ? A GLN 46 ? A GLN 60 ? 1_555 CA ? C CA . ? A CA 1169 ? 1_555 O ? A TYR 49 ? A TYR 63 ? 1_555 173.4 ? 11 O ? A GLY 15 ? A GLY 29 ? 1_555 CA ? C CA . ? A CA 1169 ? 1_555 OD1 ? A ASP 144 ? A ASP 158 ? 1_555 124.8 ? 12 OE2 ? A GLU 17 ? A GLU 31 ? 1_555 CA ? C CA . ? A CA 1169 ? 1_555 OD1 ? A ASP 144 ? A ASP 158 ? 1_555 148.9 ? 13 O ? A GLN 46 ? A GLN 60 ? 1_555 CA ? C CA . ? A CA 1169 ? 1_555 OD1 ? A ASP 144 ? A ASP 158 ? 1_555 74.5 ? 14 OE1 ? A GLN 46 ? A GLN 60 ? 1_555 CA ? C CA . ? A CA 1169 ? 1_555 OD1 ? A ASP 144 ? A ASP 158 ? 1_555 106.2 ? 15 O ? A TYR 49 ? A TYR 63 ? 1_555 CA ? C CA . ? A CA 1169 ? 1_555 OD1 ? A ASP 144 ? A ASP 158 ? 1_555 80.4 ? 16 O ? A GLY 15 ? A GLY 29 ? 1_555 CA ? C CA . ? A CA 1169 ? 1_555 OD2 ? A ASP 144 ? A ASP 158 ? 1_555 75.7 ? 17 OE2 ? A GLU 17 ? A GLU 31 ? 1_555 CA ? C CA . ? A CA 1169 ? 1_555 OD2 ? A ASP 144 ? A ASP 158 ? 1_555 156.7 ? 18 O ? A GLN 46 ? A GLN 60 ? 1_555 CA ? C CA . ? A CA 1169 ? 1_555 OD2 ? A ASP 144 ? A ASP 158 ? 1_555 119.9 ? 19 OE1 ? A GLN 46 ? A GLN 60 ? 1_555 CA ? C CA . ? A CA 1169 ? 1_555 OD2 ? A ASP 144 ? A ASP 158 ? 1_555 94.6 ? 20 O ? A TYR 49 ? A TYR 63 ? 1_555 CA ? C CA . ? A CA 1169 ? 1_555 OD2 ? A ASP 144 ? A ASP 158 ? 1_555 90.4 ? 21 OD1 ? A ASP 144 ? A ASP 158 ? 1_555 CA ? C CA . ? A CA 1169 ? 1_555 OD2 ? A ASP 144 ? A ASP 158 ? 1_555 50.6 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-09-08 2 'Structure model' 1 1 2011-05-12 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 2 0 2020-07-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Atomic model' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' Other 7 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' atom_site 2 4 'Structure model' atom_site_anisotrop 3 4 'Structure model' chem_comp 4 4 'Structure model' entity 5 4 'Structure model' entity_name_com 6 4 'Structure model' pdbx_branch_scheme 7 4 'Structure model' pdbx_chem_comp_identifier 8 4 'Structure model' pdbx_database_status 9 4 'Structure model' pdbx_entity_branch 10 4 'Structure model' pdbx_entity_branch_descriptor 11 4 'Structure model' pdbx_entity_branch_link 12 4 'Structure model' pdbx_entity_branch_list 13 4 'Structure model' pdbx_entity_nonpoly 14 4 'Structure model' pdbx_molecule_features 15 4 'Structure model' pdbx_nonpoly_scheme 16 4 'Structure model' pdbx_struct_assembly_gen 17 4 'Structure model' pdbx_struct_conn_angle 18 4 'Structure model' struct_asym 19 4 'Structure model' struct_conn 20 4 'Structure model' struct_site 21 4 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_atom_site.auth_asym_id' 2 4 'Structure model' '_atom_site.auth_seq_id' 3 4 'Structure model' '_atom_site.label_asym_id' 4 4 'Structure model' '_atom_site_anisotrop.pdbx_auth_asym_id' 5 4 'Structure model' '_atom_site_anisotrop.pdbx_auth_seq_id' 6 4 'Structure model' '_atom_site_anisotrop.pdbx_label_asym_id' 7 4 'Structure model' '_chem_comp.name' 8 4 'Structure model' '_chem_comp.type' 9 4 'Structure model' '_entity.formula_weight' 10 4 'Structure model' '_entity.pdbx_description' 11 4 'Structure model' '_entity.pdbx_number_of_molecules' 12 4 'Structure model' '_entity.type' 13 4 'Structure model' '_pdbx_database_status.status_code_sf' 14 4 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 17 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 18 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 19 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 20 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 21 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 22 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 23 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 24 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 25 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 26 4 'Structure model' '_pdbx_struct_conn_angle.value' 27 4 'Structure model' '_struct_conn.pdbx_dist_value' 28 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 29 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 30 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 31 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 32 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 33 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 34 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 35 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 36 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 37 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 38 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 39 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 40 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 41 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 42 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.5.0072 ? 1 MOSFLM 'data reduction' . ? 2 SCALA 'data scaling' . ? 3 ACORN phasing . ? 4 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 NZ A LYS 98 ? B O A HOH 2161 ? ? 0.60 2 1 CE A LYS 98 ? B O A HOH 2161 ? ? 1.51 3 1 OE1 A GLU 148 ? A O A HOH 2253 ? ? 1.61 4 1 NZ A LYS 105 ? B O A HOH 2170 ? ? 1.67 5 1 CE A LYS 98 ? B O A HOH 2163 ? ? 1.82 6 1 NZ A LYS 142 ? ? O A HOH 2245 ? ? 1.84 7 1 NZ A LYS 26 ? A O A HOH 2015 ? ? 1.87 8 1 O A HOH 2253 ? ? O A HOH 2256 ? ? 1.92 9 1 O A HOH 2009 ? ? O A HOH 2010 ? ? 2.00 10 1 O A HOH 2070 ? ? O A HOH 2076 ? ? 2.03 11 1 O A HOH 2203 ? ? O A HOH 2217 ? ? 2.07 12 1 O A HOH 2027 ? ? O A HOH 2033 ? ? 2.08 13 1 O A HOH 2191 ? ? O A HOH 2192 ? ? 2.09 14 1 NZ A LYS 51 ? ? OE1 A GLU 62 ? ? 2.12 15 1 O A HOH 2249 ? ? O A HOH 2254 ? ? 2.13 16 1 OE1 A GLU 119 ? A O A HOH 2205 ? ? 2.14 17 1 O A HOH 2110 ? ? O A HOH 2223 ? ? 2.14 18 1 O A HOH 2165 ? ? O A HOH 2249 ? ? 2.15 19 1 O A GLU 165 ? ? O A HOH 2268 ? ? 2.16 20 1 OE2 A GLU 80 ? B O A HOH 2143 ? ? 2.16 21 1 O A HOH 2143 ? ? O A HOH 2146 ? ? 2.17 22 1 O A HOH 2027 ? ? O A HOH 2040 ? ? 2.18 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O A HOH 2130 ? ? 1_555 O A HOH 2158 ? ? 4_556 2.12 2 1 O A HOH 2134 ? ? 1_555 O A HOH 2158 ? ? 4_556 2.15 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CB A VAL 47 ? B CG1 A VAL 47 ? B 1.359 1.524 -0.165 0.021 N 2 1 CB A SER 78 ? A OG A SER 78 ? A 1.336 1.418 -0.082 0.013 N 3 1 CB A LYS 142 ? ? CG A LYS 142 ? ? 1.263 1.521 -0.258 0.027 N 4 1 CG A LYS 142 ? ? CD A LYS 142 ? ? 1.208 1.520 -0.312 0.034 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CB A LYS 142 ? ? CG A LYS 142 ? ? CD A LYS 142 ? ? 88.62 111.60 -22.98 2.60 N 2 1 NE A ARG 164 ? ? CZ A ARG 164 ? ? NH2 A ARG 164 ? ? 123.81 120.30 3.51 0.50 N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id TRP _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 68 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -172.54 _pdbx_validate_torsion.psi 145.71 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 15 ? A GLY 1 2 1 Y 1 A SER 16 ? A SER 2 3 1 Y 1 A HIS 17 ? A HIS 3 4 1 Y 1 A MET 18 ? A MET 4 5 1 Y 1 A ALA 19 ? A ALA 5 6 1 Y 1 A SER 20 ? A SER 6 7 1 Y 1 A GLU 166 ? A GLU 152 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero B 2 GAL 1 B GAL 1 A GAL 1166 n B 2 GAL 2 B GAL 2 A GAL 1167 n B 2 GAL 3 B GAL 3 A GAL 1168 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GAL 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGalpb GAL 'COMMON NAME' GMML 1.0 b-D-galactopyranose GAL 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Galp GAL 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Gal # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 DGalpb1-4DGalpb1-4DGalpb1-ROH 'Glycam Condensed Sequence' GMML 1.0 2 2 'WURCS=2.0/1,3,2/[a2112h-1b_1-5]/1-1-1/a4-b1_b4-c1' WURCS PDB2Glycan 1.1.0 3 2 '[][b-D-Galp]{[(4+1)][b-D-Galp]{[(4+1)][b-D-Galp]{}}}' LINUCS PDB-CARE ? # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.value_order _pdbx_entity_branch_link.details 1 2 2 GAL C1 O1 1 GAL O4 HO4 sing ? 2 2 3 GAL C1 O1 2 GAL O4 HO4 sing ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 GAL 1 n 2 GAL 2 n 2 GAL 3 n # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'CALCIUM ION' CA 4 water HOH #