HEADER HYDROLASE 20-AUG-10 2XOM TITLE ATOMIC RESOLUTION STRUCTURE OF TMCBM61 IN COMPLEX WITH BETA-1,4- TITLE 2 GALACTOTRIOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARABINOGALACTAN ENDO-1,4-BETA-GALACTOSIDASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CARBOHYDRATE-BINDING MODULES, RESIDUES 461-606; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 2336; SOURCE 4 STRAIN: MS8B; SOURCE 5 ATCC: 43589; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PCBM61 KEYWDS HYDROLASE, GALACTAN, CARBOHYDRATE-BINDING MODULE, GLYCOSIDE KEYWDS 2 HYDROLASE, BETA-SANDWICH. EXPDTA X-RAY DIFFRACTION AUTHOR M.CID,H.LODBERG-PEDERSEN,S.KANEKO,P.M.COUTINHO,B.HENRISSAT, AUTHOR 2 W.G.T.WILLATS,A.B.BORASTON REVDAT 4 08-MAY-24 2XOM 1 HETSYN REVDAT 3 29-JUL-20 2XOM 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 18-MAY-11 2XOM 1 JRNL REVDAT 1 08-SEP-10 2XOM 0 JRNL AUTH M.CID,H.L.PEDERSEN,S.KANEKO,P.M.COUTINHO,B.HENRISSAT, JRNL AUTH 2 W.G.T.WILLATS,A.B.BORASTON JRNL TITL RECOGNITION OF THE HELICAL STRUCTURE OF BETA-1,4-GALACTAN BY JRNL TITL 2 A NEW FAMILY OF CARBOHYDRATE-BINDING MODULES. JRNL REF J.BIOL.CHEM. V. 285 35999 2010 JRNL REFN ISSN 0021-9258 JRNL PMID 20826814 JRNL DOI 10.1074/JBC.M110.166330 REMARK 2 REMARK 2 RESOLUTION. 0.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 0.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 17.74 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 92.5 REMARK 3 NUMBER OF REFLECTIONS : 77217 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.105 REMARK 3 R VALUE (WORKING SET) : 0.104 REMARK 3 FREE R VALUE : 0.120 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4089 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 0.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 0.98 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3524 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 58.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.2130 REMARK 3 BIN FREE R VALUE SET COUNT : 222 REMARK 3 BIN FREE R VALUE : 0.2310 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1171 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 35 REMARK 3 SOLVENT ATOMS : 284 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 7.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02000 REMARK 3 B22 (A**2) : -0.03000 REMARK 3 B33 (A**2) : -0.05000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.04000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.017 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.017 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.009 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.331 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.983 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.979 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1387 ; 0.021 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 974 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1917 ; 2.025 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2382 ; 1.057 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 186 ; 7.121 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 71 ;35.514 ;24.366 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 241 ;14.310 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;18.564 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 212 ; 0.128 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1554 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 297 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 783 ; 1.650 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 322 ; 0.816 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1289 ; 2.514 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 604 ; 2.942 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 605 ; 3.995 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2361 ; 1.363 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 286 ;10.361 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 2303 ; 4.409 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES REFINED INDIVIDUALLY. REMARK 4 REMARK 4 2XOM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-AUG-10. REMARK 100 THE DEPOSITION ID IS D_1290045098. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 113 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97946 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 77217 REMARK 200 RESOLUTION RANGE HIGH (A) : 0.950 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.5 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 0.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 68.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.21000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: DIRECT METHODS REMARK 200 SOFTWARE USED: ACORN REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 41.45750 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 15.96000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 41.45750 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 15.96000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 15 REMARK 465 SER A 16 REMARK 465 HIS A 17 REMARK 465 MET A 18 REMARK 465 ALA A 19 REMARK 465 SER A 20 REMARK 465 GLU A 166 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 98 O HOH A 2161 0.60 REMARK 500 CE LYS A 98 O HOH A 2161 1.51 REMARK 500 OE1 GLU A 148 O HOH A 2253 1.61 REMARK 500 NZ LYS A 105 O HOH A 2170 1.67 REMARK 500 CE LYS A 98 O HOH A 2163 1.82 REMARK 500 NZ LYS A 142 O HOH A 2245 1.84 REMARK 500 NZ LYS A 26 O HOH A 2015 1.87 REMARK 500 O HOH A 2253 O HOH A 2256 1.92 REMARK 500 O HOH A 2009 O HOH A 2010 2.00 REMARK 500 O HOH A 2070 O HOH A 2076 2.03 REMARK 500 O HOH A 2203 O HOH A 2217 2.07 REMARK 500 O HOH A 2027 O HOH A 2033 2.08 REMARK 500 O HOH A 2191 O HOH A 2192 2.09 REMARK 500 NZ LYS A 51 OE1 GLU A 62 2.12 REMARK 500 O HOH A 2249 O HOH A 2254 2.13 REMARK 500 OE1 GLU A 119 O HOH A 2205 2.14 REMARK 500 O HOH A 2110 O HOH A 2223 2.14 REMARK 500 O HOH A 2165 O HOH A 2249 2.15 REMARK 500 O GLU A 165 O HOH A 2268 2.16 REMARK 500 OE2 GLU A 80 O HOH A 2143 2.16 REMARK 500 O HOH A 2143 O HOH A 2146 2.17 REMARK 500 O HOH A 2027 O HOH A 2040 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2130 O HOH A 2158 4556 2.12 REMARK 500 O HOH A 2134 O HOH A 2158 4556 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL A 47 CB VAL A 47 CG1 -0.165 REMARK 500 SER A 78 CB SER A 78 OG -0.082 REMARK 500 LYS A 142 CB LYS A 142 CG -0.258 REMARK 500 LYS A 142 CG LYS A 142 CD -0.312 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 142 CB - CG - CD ANGL. DEV. = -23.0 DEGREES REMARK 500 ARG A 164 NE - CZ - NH2 ANGL. DEV. = 3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 68 145.71 -172.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1169 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 29 O REMARK 620 2 GLU A 31 OE2 81.5 REMARK 620 3 GLN A 60 O 159.0 83.4 REMARK 620 4 GLN A 60 OE1 88.2 89.5 77.2 REMARK 620 5 TYR A 63 O 88.7 84.2 104.2 173.4 REMARK 620 6 ASP A 158 OD1 124.8 148.9 74.5 106.2 80.4 REMARK 620 7 ASP A 158 OD2 75.7 156.7 119.9 94.6 90.4 50.6 REMARK 620 N 1 2 3 4 5 6 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2XON RELATED DB: PDB REMARK 900 STRUCTURE OF TMCBM61 IN COMPLEX WITH BETA- 1,4-GALACTOTRIOSE AT 1.4 REMARK 900 A RESOLUTION DBREF 2XOM A 21 166 UNP Q9X0S8 Q9X0S8_THEMA 461 606 SEQADV 2XOM GLY A 15 UNP Q9X0S8 EXPRESSION TAG SEQADV 2XOM SER A 16 UNP Q9X0S8 EXPRESSION TAG SEQADV 2XOM HIS A 17 UNP Q9X0S8 EXPRESSION TAG SEQADV 2XOM MET A 18 UNP Q9X0S8 EXPRESSION TAG SEQADV 2XOM ALA A 19 UNP Q9X0S8 EXPRESSION TAG SEQADV 2XOM SER A 20 UNP Q9X0S8 EXPRESSION TAG SEQRES 1 A 152 GLY SER HIS MET ALA SER SER ARG ASN TYR LEU LYS ASN SEQRES 2 A 152 PRO GLY PHE GLU THR GLY GLU PHE SER PRO TRP ARG VAL SEQRES 3 A 152 SER GLY ASP LYS LYS ALA VAL LYS VAL VAL LYS ALA ASN SEQRES 4 A 152 PRO SER SER ASN ALA HIS GLN GLY GLU TYR ALA VAL ASN SEQRES 5 A 152 PHE TRP LEU ASP GLU SER PHE SER PHE GLU LEU SER GLN SEQRES 6 A 152 GLU VAL GLU LEU PRO ALA GLY VAL TYR ARG VAL GLY PHE SEQRES 7 A 152 TRP THR HIS GLY GLU LYS GLY VAL LYS ILE ALA LEU LYS SEQRES 8 A 152 VAL SER ASP TYR GLY GLY ASN GLU ARG SER VAL GLU VAL SEQRES 9 A 152 GLU THR THR GLY TRP LEU GLU TRP LYS ASN PRO GLU ILE SEQRES 10 A 152 ARG ASN ILE LYS VAL GLU THR GLY ARG ILE LYS ILE THR SEQRES 11 A 152 VAL SER VAL GLU GLY ARG ALA GLY ASP TRP GLY PHE ILE SEQRES 12 A 152 ASP ASP PHE TYR LEU PHE ARG GLU GLU HET GAL B 1 24 HET GAL B 2 11 HET GAL B 3 11 HET CA A1169 1 HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM CA CALCIUM ION HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE FORMUL 2 GAL 3(C6 H12 O6) FORMUL 3 CA CA 2+ FORMUL 4 HOH *284(H2 O) HELIX 1 1 PRO A 54 ALA A 58 5 5 SHEET 1 AA 5 ARG A 39 GLY A 42 0 SHEET 2 AA 5 PHE A 73 GLU A 82 -1 O GLU A 76 N SER A 41 SHEET 3 AA 5 ARG A 140 GLY A 149 -1 O ILE A 141 N VAL A 81 SHEET 4 AA 5 LYS A 101 SER A 107 -1 O LYS A 101 N GLU A 148 SHEET 5 AA 5 ARG A 114 GLU A 119 -1 O ARG A 114 N VAL A 106 SHEET 1 AB 5 VAL A 47 LYS A 51 0 SHEET 2 AB 5 TYR A 63 TRP A 68 -1 O ALA A 64 N VAL A 50 SHEET 3 AB 5 TRP A 154 ARG A 164 -1 O GLY A 155 N PHE A 67 SHEET 4 AB 5 GLY A 86 GLY A 96 -1 O ARG A 89 N PHE A 163 SHEET 5 AB 5 GLY A 122 LYS A 127 -1 N GLY A 122 O GLY A 96 SHEET 1 AC 5 VAL A 47 LYS A 51 0 SHEET 2 AC 5 TYR A 63 TRP A 68 -1 O ALA A 64 N VAL A 50 SHEET 3 AC 5 TRP A 154 ARG A 164 -1 O GLY A 155 N PHE A 67 SHEET 4 AC 5 GLY A 86 GLY A 96 -1 O ARG A 89 N PHE A 163 SHEET 5 AC 5 GLU A 130 VAL A 136 -1 O ILE A 131 N VAL A 90 SHEET 1 AD 2 GLY A 122 LYS A 127 0 SHEET 2 AD 2 GLY A 86 GLY A 96 -1 O THR A 94 N LYS A 127 LINK O4 AGAL B 1 C1 GAL B 2 1555 1555 1.40 LINK O4 BGAL B 1 C1 GAL B 2 1555 1555 1.41 LINK O4 GAL B 2 C1 GAL B 3 1555 1555 1.38 LINK O GLY A 29 CA CA A1169 1555 1555 2.41 LINK OE2 GLU A 31 CA CA A1169 1555 1555 2.34 LINK O GLN A 60 CA CA A1169 1555 1555 2.39 LINK OE1 GLN A 60 CA CA A1169 1555 1555 2.33 LINK O TYR A 63 CA CA A1169 1555 1555 2.32 LINK OD1 ASP A 158 CA CA A1169 1555 1555 2.67 LINK OD2 ASP A 158 CA CA A1169 1555 1555 2.44 CISPEP 1 SER A 36 PRO A 37 0 3.26 CISPEP 2 ASN A 53 PRO A 54 0 2.56 CRYST1 82.915 31.920 67.790 90.00 128.28 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012061 0.000000 0.009518 0.00000 SCALE2 0.000000 0.031328 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018792 0.00000