HEADER LIGASE 26-AUG-10 2XPC TITLE SECOND-GENERATION SULFONAMIDE INHIBITORS OF MURD: ACTIVITY TITLE 2 OPTIMISATION WITH CONFORMATIONALLY RIGID ANALOGUES OF D-GLUTAMIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: UDP-N-ACETYLMURAMOYL-L-ALANYL-D-GLUTAMATE SYNTHETASE, D- COMPND 5 GLUTAMIC ACID-ADDING ENZYME, MURD LIGASE; COMPND 6 EC: 6.3.2.9; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 CELL_LINE: DH5A; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI DH5[ALPHA]; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 668369; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PABD16/MURD KEYWDS LIGASE, CELL CYCLE, CELL DIVISION, CELL SHAPE, CELL WALL KEYWDS 2 BIOGENESIS/DEGRADATION, LIGASE SYNTHESIS EXPDTA X-RAY DIFFRACTION AUTHOR I.SOSIC,H.BARRETEAU,M.SIMCIC,R.SINK,J.CESAR,S.GOLIC-GRDADOLNIK, AUTHOR 2 C.CONTRERAS-MARTEL,A.DESSEN,A.AMOROSO,B.JORIS,D.BLANOT,S.GOBEC REVDAT 4 20-DEC-23 2XPC 1 REMARK LINK REVDAT 3 07-FEB-18 2XPC 1 SOURCE REVDAT 2 10-AUG-11 2XPC 1 JRNL REMARK VERSN REVDAT 1 18-MAY-11 2XPC 0 JRNL AUTH I.SOSI,H.BARRETEAU,M.SIM,R.SINK,J.CESAR,A.ZEGA, JRNL AUTH 2 S.G.GRDADOLNIK,C.CONTRERAS-MARTEL,A.DESSEN,A.AMOROSO, JRNL AUTH 3 B.JORIS,D.BLANOT,S.GOBEC JRNL TITL SECOND-GENERATION SULFONAMIDE INHIBITORS OF D- GLUTAMIC JRNL TITL 2 ACID-ADDING ENZYME: ACTIVITY OPTIMISATION WITH JRNL TITL 3 CONFORMATIONALLY RIGID ANALOGUES OF D- GLUTAMIC ACID. JRNL REF EUR.J.MED.CHEM V. 46 2880 2011 JRNL REFN ISSN 0223-5234 JRNL PMID 21524830 JRNL DOI 10.1016/J.EJMECH.2011.04.011 REMARK 2 REMARK 2 RESOLUTION. 1.49 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.49 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.43 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 81535 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 9058 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.49 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.53 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4752 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3450 REMARK 3 BIN FREE R VALUE SET COUNT : 509 REMARK 3 BIN FREE R VALUE : 0.3730 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3278 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 70 REMARK 3 SOLVENT ATOMS : 487 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.67 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.08000 REMARK 3 B22 (A**2) : 0.08000 REMARK 3 B33 (A**2) : -0.16000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.065 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.067 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.046 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.703 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.959 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3465 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4717 ; 1.558 ; 1.992 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 455 ; 6.178 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 148 ;32.299 ;24.459 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 578 ;12.592 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;14.799 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 541 ; 0.130 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2604 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2189 ; 1.622 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3507 ; 2.414 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1276 ; 3.598 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1199 ; 5.456 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 92 REMARK 3 ORIGIN FOR THE GROUP (A): 27.2185 35.7148 53.9279 REMARK 3 T TENSOR REMARK 3 T11: 0.0297 T22: 0.0368 REMARK 3 T33: 0.0266 T12: -0.0178 REMARK 3 T13: 0.0030 T23: 0.0094 REMARK 3 L TENSOR REMARK 3 L11: 2.5581 L22: 2.9076 REMARK 3 L33: 3.3354 L12: 0.6669 REMARK 3 L13: -0.7383 L23: -0.0817 REMARK 3 S TENSOR REMARK 3 S11: 0.0367 S12: 0.0553 S13: 0.1434 REMARK 3 S21: 0.0127 S22: -0.0077 S23: 0.0081 REMARK 3 S31: -0.2880 S32: 0.0715 S33: -0.0290 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 94 A 295 REMARK 3 ORIGIN FOR THE GROUP (A): 5.0102 19.3585 64.5474 REMARK 3 T TENSOR REMARK 3 T11: 0.0200 T22: 0.0202 REMARK 3 T33: 0.0210 T12: 0.0053 REMARK 3 T13: 0.0106 T23: 0.0044 REMARK 3 L TENSOR REMARK 3 L11: 1.8366 L22: 0.7146 REMARK 3 L33: 1.5296 L12: 0.3784 REMARK 3 L13: -0.6864 L23: -0.2418 REMARK 3 S TENSOR REMARK 3 S11: -0.0156 S12: -0.0517 S13: -0.0906 REMARK 3 S21: 0.0712 S22: -0.0106 S23: 0.0598 REMARK 3 S31: 0.0419 S32: -0.0904 S33: 0.0262 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 304 A 439 REMARK 3 ORIGIN FOR THE GROUP (A): -8.6263 29.2641 42.1611 REMARK 3 T TENSOR REMARK 3 T11: 0.0028 T22: 0.0455 REMARK 3 T33: 0.0080 T12: 0.0027 REMARK 3 T13: -0.0028 T23: 0.0078 REMARK 3 L TENSOR REMARK 3 L11: 3.8486 L22: 2.1357 REMARK 3 L33: 1.7190 L12: -1.0141 REMARK 3 L13: 0.1158 L23: -0.0868 REMARK 3 S TENSOR REMARK 3 S11: 0.0135 S12: 0.1840 S13: -0.0441 REMARK 3 S21: -0.0584 S22: -0.0051 S23: 0.0737 REMARK 3 S31: -0.0074 S32: -0.0940 S33: -0.0084 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2XPC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-AUG-10. REMARK 100 THE DEPOSITION ID IS D_1290045168. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-APR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97238 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 91001 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.490 REMARK 200 RESOLUTION RANGE LOW (A) : 46.430 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.2 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 29.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.49 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 69.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.49000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.090 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1UAG REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.9M (NH4)2SO4,7% PEG 400, 50MM NACL, REMARK 280 100MM HEPES, PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.82100 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 33.91050 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 101.73150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 222 REMARK 465 ALA A 223 REMARK 465 ASP A 224 REMARK 465 GLU A 225 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 13 -123.04 -98.96 REMARK 500 GLN A 243 62.86 60.47 REMARK 500 PHE A 303 55.34 38.08 REMARK 500 ARG A 380 83.41 -160.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 051 A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1441 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1442 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1444 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1445 DBREF 2XPC A 1 437 UNP Q8X9Y9 MURD_ECO57 2 438 SEQADV 2XPC ALA A 374 UNP Q8X9Y9 VAL 375 CONFLICT SEQADV 2XPC SER A 438 UNP Q8X9Y9 EXPRESSION TAG SEQADV 2XPC HIS A 439 UNP Q8X9Y9 EXPRESSION TAG SEQRES 1 A 439 ALA ASP TYR GLN GLY LYS ASN VAL VAL ILE ILE GLY LEU SEQRES 2 A 439 GLY LEU THR GLY LEU SER CYS VAL ASP PHE PHE LEU ALA SEQRES 3 A 439 ARG GLY VAL THR PRO ARG VAL MET ASP THR ARG MET THR SEQRES 4 A 439 PRO PRO GLY LEU ASP LYS LEU PRO GLU ALA VAL GLU ARG SEQRES 5 A 439 HIS THR GLY SER LEU ASN ASP GLU TRP LEU MET ALA ALA SEQRES 6 A 439 ASP LEU ILE VAL ALA SER PRO GLY ILE ALA LEU ALA HIS SEQRES 7 A 439 PRO SER LEU SER ALA ALA ALA ASP ALA GLY ILE GLU ILE SEQRES 8 A 439 VAL GLY ASP ILE GLU LEU PHE CYS ARG GLU ALA GLN ALA SEQRES 9 A 439 PRO ILE VAL ALA ILE THR GLY SER ASN GLY LYS SER THR SEQRES 10 A 439 VAL THR THR LEU VAL GLY GLU MET ALA LYS ALA ALA GLY SEQRES 11 A 439 VAL ASN VAL GLY VAL GLY GLY ASN ILE GLY LEU PRO ALA SEQRES 12 A 439 LEU MET LEU LEU ASP ASP GLU CYS GLU LEU TYR VAL LEU SEQRES 13 A 439 GLU LEU SER SER PHE GLN LEU GLU THR THR SER SER LEU SEQRES 14 A 439 GLN ALA VAL ALA ALA THR ILE LEU ASN VAL THR GLU ASP SEQRES 15 A 439 HIS MET ASP ARG TYR PRO PHE GLY LEU GLN GLN TYR ARG SEQRES 16 A 439 ALA ALA KCX LEU ARG ILE TYR GLU ASN ALA LYS VAL CYS SEQRES 17 A 439 VAL VAL ASN ALA ASP ASP ALA LEU THR MET PRO ILE ARG SEQRES 18 A 439 GLY ALA ASP GLU ARG CYS VAL SER PHE GLY VAL ASN MET SEQRES 19 A 439 GLY ASP TYR HIS LEU ASN HIS GLN GLN GLY GLU THR TRP SEQRES 20 A 439 LEU ARG VAL LYS GLY GLU LYS VAL LEU ASN VAL LYS GLU SEQRES 21 A 439 MET LYS LEU SER GLY GLN HIS ASN TYR THR ASN ALA LEU SEQRES 22 A 439 ALA ALA LEU ALA LEU ALA ASP ALA ALA GLY LEU PRO ARG SEQRES 23 A 439 ALA SER SER LEU LYS ALA LEU THR THR PHE THR GLY LEU SEQRES 24 A 439 PRO HIS ARG PHE GLU VAL VAL LEU GLU HIS ASN GLY VAL SEQRES 25 A 439 ARG TRP ILE ASN ASP SER LYS ALA THR ASN VAL GLY SER SEQRES 26 A 439 THR GLU ALA ALA LEU ASN GLY LEU HIS VAL ASP GLY THR SEQRES 27 A 439 LEU HIS LEU LEU LEU GLY GLY ASP GLY LYS SER ALA ASP SEQRES 28 A 439 PHE SER PRO LEU ALA ARG TYR LEU ASN GLY ASP ASN VAL SEQRES 29 A 439 ARG LEU TYR CYS PHE GLY ARG ASP GLY ALA GLN LEU ALA SEQRES 30 A 439 ALA LEU ARG PRO GLU VAL ALA GLU GLN THR GLU THR MET SEQRES 31 A 439 GLU GLN ALA MET ARG LEU LEU ALA PRO ARG VAL GLN PRO SEQRES 32 A 439 GLY ASP MET VAL LEU LEU SER PRO ALA CYS ALA SER LEU SEQRES 33 A 439 ASP GLN PHE LYS ASN PHE GLU GLN ARG GLY ASN GLU PHE SEQRES 34 A 439 ALA ARG LEU ALA LYS GLU LEU GLY SER HIS MODRES 2XPC KCX A 198 LYS LYSINE NZ-CARBOXYLIC ACID HET KCX A 198 12 HET 051 A 500 37 HET DMS A 601 4 HET DMS A 602 4 HET DMS A 604 4 HET SO4 A1441 5 HET SO4 A1442 5 HET SO4 A1444 5 HET SO4 A1445 5 HET CL A1505 1 HETNAM KCX LYSINE NZ-CARBOXYLIC ACID HETNAM 051 (1R,3R,4S)-4-[({6-[(4-CYANO-2-FLUOROBENZYL) HETNAM 2 051 OXY]NAPHTHALEN-2-YL}SULFONYL)AMINO]CYCLOHEXANE-1,3- HETNAM 3 051 DICARBOXYLIC ACID HETNAM DMS DIMETHYL SULFOXIDE HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION FORMUL 1 KCX C7 H14 N2 O4 FORMUL 2 051 C26 H23 F N2 O7 S FORMUL 3 DMS 3(C2 H6 O S) FORMUL 6 SO4 4(O4 S 2-) FORMUL 10 CL CL 1- FORMUL 11 HOH *487(H2 O) HELIX 1 1 LEU A 13 ALA A 26 1 14 HELIX 2 2 GLY A 42 LEU A 46 5 5 HELIX 3 3 ASN A 58 ALA A 65 1 8 HELIX 4 4 HIS A 78 ALA A 87 1 10 HELIX 5 5 GLY A 93 ALA A 102 1 10 HELIX 6 6 GLY A 114 ALA A 129 1 16 HELIX 7 7 PRO A 142 LEU A 147 5 6 HELIX 8 8 SER A 159 THR A 165 1 7 HELIX 9 9 HIS A 183 TYR A 187 5 5 HELIX 10 10 PHE A 189 ARG A 200 1 12 HELIX 11 11 ILE A 201 GLU A 203 5 3 HELIX 12 12 ASP A 214 MET A 218 5 5 HELIX 13 13 LYS A 259 MET A 261 5 3 HELIX 14 14 GLY A 265 ALA A 282 1 18 HELIX 15 15 PRO A 285 PHE A 296 1 12 HELIX 16 16 ASN A 322 ASN A 331 1 10 HELIX 17 17 PHE A 352 LEU A 359 5 8 HELIX 18 18 ASP A 372 ALA A 378 1 7 HELIX 19 19 LEU A 379 GLU A 382 5 4 HELIX 20 20 THR A 389 ALA A 398 1 10 HELIX 21 21 PRO A 399 VAL A 401 5 3 HELIX 22 22 ASN A 421 GLY A 437 1 17 SHEET 1 AA 5 ARG A 52 THR A 54 0 SHEET 2 AA 5 ARG A 32 ASP A 35 1 O VAL A 33 N HIS A 53 SHEET 3 AA 5 VAL A 8 ILE A 11 1 O VAL A 8 N ARG A 32 SHEET 4 AA 5 LEU A 67 ALA A 70 1 O LEU A 67 N VAL A 9 SHEET 5 AA 5 GLU A 90 VAL A 92 1 O GLU A 90 N ILE A 68 SHEET 1 AB 6 VAL A 133 GLY A 137 0 SHEET 2 AB 6 LEU A 153 GLU A 157 1 O LEU A 153 N GLY A 134 SHEET 3 AB 6 ILE A 106 THR A 110 1 O VAL A 107 N LEU A 156 SHEET 4 AB 6 ALA A 173 ILE A 176 1 O ALA A 173 N ALA A 108 SHEET 5 AB 6 VAL A 207 ASN A 211 1 O VAL A 207 N ALA A 174 SHEET 6 AB 6 VAL A 228 PHE A 230 1 O VAL A 228 N VAL A 210 SHEET 1 AC 3 TYR A 237 HIS A 241 0 SHEET 2 AC 3 THR A 246 VAL A 250 -1 O TRP A 247 N ASN A 240 SHEET 3 AC 3 GLU A 253 ASN A 257 -1 O GLU A 253 N VAL A 250 SHEET 1 AD 6 GLU A 304 HIS A 309 0 SHEET 2 AD 6 VAL A 312 ASN A 316 -1 O VAL A 312 N HIS A 309 SHEET 3 AD 6 MET A 406 LEU A 409 1 O VAL A 407 N ILE A 315 SHEET 4 AD 6 LEU A 339 GLY A 344 1 O HIS A 340 N LEU A 408 SHEET 5 AD 6 VAL A 364 PHE A 369 1 O ARG A 365 N LEU A 341 SHEET 6 AD 6 ALA A 384 GLN A 386 1 O GLU A 385 N CYS A 368 SSBOND 1 CYS A 208 CYS A 227 1555 1555 2.08 LINK C ALA A 197 N KCX A 198 1555 1555 1.34 LINK C KCX A 198 N LEU A 199 1555 1555 1.33 SITE 1 AC1 22 ILE A 11 GLY A 12 ASP A 35 THR A 36 SITE 2 AC1 22 ARG A 37 SER A 71 GLY A 73 PHE A 161 SITE 3 AC1 22 HIS A 183 THR A 321 LYS A 348 ALA A 414 SITE 4 AC1 22 SER A 415 ASN A 421 PHE A 422 DMS A 602 SITE 5 AC1 22 HOH A2243 HOH A2245 HOH A2477 HOH A2478 SITE 6 AC1 22 HOH A2479 HOH A2480 SITE 1 AC2 8 LEU A 163 THR A 166 SER A 167 SER A 168 SITE 2 AC2 8 LEU A 169 ARG A 200 GLU A 203 HOH A2264 SITE 1 AC3 5 GLY A 73 ASP A 185 ARG A 186 051 A 500 SITE 2 AC3 5 HOH A2481 SITE 1 AC4 8 ASN A 7 ARG A 32 ALA A 64 GLU A 308 SITE 2 AC4 8 HIS A 309 ASN A 310 HOH A2098 HOH A2482 SITE 1 AC5 9 ASN A 113 GLY A 114 LYS A 115 SER A 116 SITE 2 AC5 9 THR A 117 ARG A 302 LYS A 319 HOH A2483 SITE 3 AC5 9 HOH A2484 SITE 1 AC6 4 HIS A 309 ASN A 310 SER A 438 HIS A 439 SITE 1 AC7 4 GLY A 14 LEU A 15 THR A 16 HOH A2485 SITE 1 AC8 4 ARG A 37 MET A 38 GLN A 170 HOH A2487 CRYST1 65.659 65.659 135.642 90.00 90.00 90.00 P 41 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015230 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015230 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007372 0.00000