HEADER OXIDOREDUCTASE 26-AUG-10 2XPE TITLE OXIDISED THIOL PEROXIDASE (TPX) FROM YERSINIA PSEUDOTUBERCULOSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOL PEROXIDASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.11.1.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: YERSINIA PSEUDOTUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 502800; SOURCE 4 STRAIN: YPIII; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-151 KEYWDS OXIDOREDUCTASE, PEROXIREDOXIN, THIOREDOXIN-FOLD, ROS PROTECTION EXPDTA X-RAY DIFFRACTION AUTHOR M.GABRIELSEN,C.E.ZETTERSTROM,D.WANG,M.ELOFSSON,A.J.ROE REVDAT 5 13-NOV-24 2XPE 1 REMARK REVDAT 4 20-DEC-23 2XPE 1 REMARK REVDAT 3 10-OCT-12 2XPE 1 JRNL REVDAT 2 31-AUG-11 2XPE 1 REMARK REVDAT 1 10-AUG-11 2XPE 0 JRNL AUTH M.GABRIELSEN,K.S.BECKHAM,V.A.FEHER,C.E.ZETTERSTROM,D.WANG, JRNL AUTH 2 S.MULLER,M.ELOFSSON,R.E.AMARO,O.BYRON,A.J.ROE JRNL TITL STRUCTURAL CHARACTERISATION OF TPX FROM YERSINIA JRNL TITL 2 PSEUDOTUBERCULOSIS REVEALS INSIGHTS INTO THE BINDING OF JRNL TITL 3 SALICYLIDENE ACYLHYDRAZIDE COMPOUNDS. JRNL REF PLOS ONE V. 7 32217 2012 JRNL REFN ESSN 1932-6203 JRNL PMID 22384182 JRNL DOI 10.1371/JOURNAL.PONE.0032217 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH D.WANG,C.E.ZETTERSTROM,M.GABRIELSEN,K.S.H.BECKHAM,J.J.TREE, REMARK 1 AUTH 2 S.E.MACDONALD,O.BYRON,T.J.MITCHELL,D.L.GALLY,P.HERZYK, REMARK 1 AUTH 3 A.MAHAJAN,H.UVELL,R.BURCHMORE,B.O.SMITH,M.ELOFSSON,A.J.ROE REMARK 1 TITL IDENTIFICATION OF BACTERIAL TARGET PROTEINS FOR THE REMARK 1 TITL 2 SALICYLIDENE ACYLHYDRAZIDE CLASS OF VIRULENCE-BLOCKING REMARK 1 TITL 3 COMPOUNDS. REMARK 1 REF J.BIOL.CHEM. V. 286 29922 2011 REMARK 1 REFN ISSN 0021-9258 REMARK 1 PMID 21724850 REMARK 1 DOI 10.1074/JBC.M111.233858 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 52.12 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.500 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 11814 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.301 REMARK 3 R VALUE (WORKING SET) : 0.299 REMARK 3 FREE R VALUE : 0.336 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.730 REMARK 3 FREE R VALUE TEST SET COUNT : 558 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 814 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3690 REMARK 3 BIN FREE R VALUE SET COUNT : 50 REMARK 3 BIN FREE R VALUE : 0.5250 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2362 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 27 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 45.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.88 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -7.94800 REMARK 3 B22 (A**2) : 4.95400 REMARK 3 B33 (A**2) : 2.99400 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.901 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.393 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.000 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.000 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.902 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.886 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2397 ; 0.006 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3271 ; 0.920 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 328 ; 4.420 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 88 ;39.070 ;25.682 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 354 ;16.981 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;13.647 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 405 ; 0.054 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1795 ; 0.003 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1021 ; 0.175 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1664 ; 0.294 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 99 ; 0.092 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 25 ; 0.147 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 2 ; 0.055 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1630 ; 0.229 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2598 ; 0.420 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 767 ; 0.309 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 673 ; 0.544 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2XPE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-AUG-10. REMARK 100 THE DEPOSITION ID IS D_1290045175. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-DEC-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : SI (111) DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11830 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 38.270 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 13.54 REMARK 200 R MERGE (I) : 0.14000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 14.25 REMARK 200 R MERGE FOR SHELL (I) : 0.47000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1QXH REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M TRI-POTASSIUM CITRATE, 20% PEG REMARK 280 3350, PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.18550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.69700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.72200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 45.69700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.18550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.72200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -32 REMARK 465 HIS A -31 REMARK 465 HIS A -30 REMARK 465 HIS A -29 REMARK 465 HIS A -28 REMARK 465 HIS A -27 REMARK 465 HIS A -26 REMARK 465 GLY A -25 REMARK 465 LYS A -24 REMARK 465 PRO A -23 REMARK 465 ILE A -22 REMARK 465 PRO A -21 REMARK 465 ASN A -20 REMARK 465 PRO A -19 REMARK 465 LEU A -18 REMARK 465 LEU A -17 REMARK 465 GLY A -16 REMARK 465 LEU A -15 REMARK 465 ASP A -14 REMARK 465 SER A -13 REMARK 465 THR A -12 REMARK 465 GLU A -11 REMARK 465 ASN A -10 REMARK 465 LEU A -9 REMARK 465 TYR A -8 REMARK 465 PHE A -7 REMARK 465 GLN A -6 REMARK 465 GLY A -5 REMARK 465 ILE A -4 REMARK 465 ASP A -3 REMARK 465 PRO A -2 REMARK 465 PHE A -1 REMARK 465 THR A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 GLN A 3 REMARK 465 MET B -32 REMARK 465 HIS B -31 REMARK 465 HIS B -30 REMARK 465 HIS B -29 REMARK 465 HIS B -28 REMARK 465 HIS B -27 REMARK 465 HIS B -26 REMARK 465 GLY B -25 REMARK 465 LYS B -24 REMARK 465 PRO B -23 REMARK 465 ILE B -22 REMARK 465 PRO B -21 REMARK 465 ASN B -20 REMARK 465 PRO B -19 REMARK 465 LEU B -18 REMARK 465 LEU B -17 REMARK 465 GLY B -16 REMARK 465 LEU B -15 REMARK 465 ASP B -14 REMARK 465 SER B -13 REMARK 465 THR B -12 REMARK 465 GLU B -11 REMARK 465 ASN B -10 REMARK 465 LEU B -9 REMARK 465 TYR B -8 REMARK 465 PHE B -7 REMARK 465 GLN B -6 REMARK 465 GLY B -5 REMARK 465 ILE B -4 REMARK 465 ASP B -3 REMARK 465 PRO B -2 REMARK 465 PHE B -1 REMARK 465 THR B 0 REMARK 465 MET B 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 8 CG CD OE1 NE2 REMARK 470 ILE A 21 CG1 CG2 CD1 REMARK 470 LYS A 24 CG CD CE NZ REMARK 470 ARG A 66 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 67 CB CG CD CE NZ REMARK 470 GLU A 76 CG CD OE1 OE2 REMARK 470 GLN A 141 CG CD OE1 NE2 REMARK 470 LYS A 167 CG CD CE NZ REMARK 470 LYS B 17 CD CE NZ REMARK 470 LYS B 26 CD CE NZ REMARK 470 LYS B 33 CG CD CE NZ REMARK 470 ARG B 66 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 67 CG CD CE NZ REMARK 470 GLN B 70 CG CD OE1 NE2 REMARK 470 GLU B 76 CG CD OE1 OE2 REMARK 470 ARG B 93 CB CG CD NE CZ NH1 NH2 REMARK 470 GLU B 98 CB CG CD OE1 OE2 REMARK 470 LEU B 100 CB CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 8 100.10 -35.45 REMARK 500 ASN A 10 153.79 100.88 REMARK 500 LYS A 26 108.79 82.78 REMARK 500 ALA A 63 -29.82 65.93 REMARK 500 LEU A 109 -66.32 -21.21 REMARK 500 ASP B 142 -3.74 76.68 REMARK 500 ASN B 158 94.96 -69.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2XPD RELATED DB: PDB REMARK 900 REDUCED THIOL PEROXIDASE (TPX) FROM YERSINIA PSEUDOTUBERCULOSIS REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE INCLUDES THE NON-CLEAVED HIS6-TAG AND THE TEV REMARK 999 PROTEASE RECOGNITION SITE. DBREF 2XPE A 1 167 UNP Q66A71 Q66A71_YERPS 1 167 DBREF 2XPE B 1 167 UNP Q66A71 Q66A71_YERPS 1 167 SEQADV 2XPE MET A -32 UNP Q66A71 EXPRESSION TAG SEQADV 2XPE HIS A -31 UNP Q66A71 EXPRESSION TAG SEQADV 2XPE HIS A -30 UNP Q66A71 EXPRESSION TAG SEQADV 2XPE HIS A -29 UNP Q66A71 EXPRESSION TAG SEQADV 2XPE HIS A -28 UNP Q66A71 EXPRESSION TAG SEQADV 2XPE HIS A -27 UNP Q66A71 EXPRESSION TAG SEQADV 2XPE HIS A -26 UNP Q66A71 EXPRESSION TAG SEQADV 2XPE GLY A -25 UNP Q66A71 EXPRESSION TAG SEQADV 2XPE LYS A -24 UNP Q66A71 EXPRESSION TAG SEQADV 2XPE PRO A -23 UNP Q66A71 EXPRESSION TAG SEQADV 2XPE ILE A -22 UNP Q66A71 EXPRESSION TAG SEQADV 2XPE PRO A -21 UNP Q66A71 EXPRESSION TAG SEQADV 2XPE ASN A -20 UNP Q66A71 EXPRESSION TAG SEQADV 2XPE PRO A -19 UNP Q66A71 EXPRESSION TAG SEQADV 2XPE LEU A -18 UNP Q66A71 EXPRESSION TAG SEQADV 2XPE LEU A -17 UNP Q66A71 EXPRESSION TAG SEQADV 2XPE GLY A -16 UNP Q66A71 EXPRESSION TAG SEQADV 2XPE LEU A -15 UNP Q66A71 EXPRESSION TAG SEQADV 2XPE ASP A -14 UNP Q66A71 EXPRESSION TAG SEQADV 2XPE SER A -13 UNP Q66A71 EXPRESSION TAG SEQADV 2XPE THR A -12 UNP Q66A71 EXPRESSION TAG SEQADV 2XPE GLU A -11 UNP Q66A71 EXPRESSION TAG SEQADV 2XPE ASN A -10 UNP Q66A71 EXPRESSION TAG SEQADV 2XPE LEU A -9 UNP Q66A71 EXPRESSION TAG SEQADV 2XPE TYR A -8 UNP Q66A71 EXPRESSION TAG SEQADV 2XPE PHE A -7 UNP Q66A71 EXPRESSION TAG SEQADV 2XPE GLN A -6 UNP Q66A71 EXPRESSION TAG SEQADV 2XPE GLY A -5 UNP Q66A71 EXPRESSION TAG SEQADV 2XPE ILE A -4 UNP Q66A71 EXPRESSION TAG SEQADV 2XPE ASP A -3 UNP Q66A71 EXPRESSION TAG SEQADV 2XPE PRO A -2 UNP Q66A71 EXPRESSION TAG SEQADV 2XPE PHE A -1 UNP Q66A71 EXPRESSION TAG SEQADV 2XPE THR A 0 UNP Q66A71 EXPRESSION TAG SEQADV 2XPE MET B -32 UNP Q66A71 EXPRESSION TAG SEQADV 2XPE HIS B -31 UNP Q66A71 EXPRESSION TAG SEQADV 2XPE HIS B -30 UNP Q66A71 EXPRESSION TAG SEQADV 2XPE HIS B -29 UNP Q66A71 EXPRESSION TAG SEQADV 2XPE HIS B -28 UNP Q66A71 EXPRESSION TAG SEQADV 2XPE HIS B -27 UNP Q66A71 EXPRESSION TAG SEQADV 2XPE HIS B -26 UNP Q66A71 EXPRESSION TAG SEQADV 2XPE GLY B -25 UNP Q66A71 EXPRESSION TAG SEQADV 2XPE LYS B -24 UNP Q66A71 EXPRESSION TAG SEQADV 2XPE PRO B -23 UNP Q66A71 EXPRESSION TAG SEQADV 2XPE ILE B -22 UNP Q66A71 EXPRESSION TAG SEQADV 2XPE PRO B -21 UNP Q66A71 EXPRESSION TAG SEQADV 2XPE ASN B -20 UNP Q66A71 EXPRESSION TAG SEQADV 2XPE PRO B -19 UNP Q66A71 EXPRESSION TAG SEQADV 2XPE LEU B -18 UNP Q66A71 EXPRESSION TAG SEQADV 2XPE LEU B -17 UNP Q66A71 EXPRESSION TAG SEQADV 2XPE GLY B -16 UNP Q66A71 EXPRESSION TAG SEQADV 2XPE LEU B -15 UNP Q66A71 EXPRESSION TAG SEQADV 2XPE ASP B -14 UNP Q66A71 EXPRESSION TAG SEQADV 2XPE SER B -13 UNP Q66A71 EXPRESSION TAG SEQADV 2XPE THR B -12 UNP Q66A71 EXPRESSION TAG SEQADV 2XPE GLU B -11 UNP Q66A71 EXPRESSION TAG SEQADV 2XPE ASN B -10 UNP Q66A71 EXPRESSION TAG SEQADV 2XPE LEU B -9 UNP Q66A71 EXPRESSION TAG SEQADV 2XPE TYR B -8 UNP Q66A71 EXPRESSION TAG SEQADV 2XPE PHE B -7 UNP Q66A71 EXPRESSION TAG SEQADV 2XPE GLN B -6 UNP Q66A71 EXPRESSION TAG SEQADV 2XPE GLY B -5 UNP Q66A71 EXPRESSION TAG SEQADV 2XPE ILE B -4 UNP Q66A71 EXPRESSION TAG SEQADV 2XPE ASP B -3 UNP Q66A71 EXPRESSION TAG SEQADV 2XPE PRO B -2 UNP Q66A71 EXPRESSION TAG SEQADV 2XPE PHE B -1 UNP Q66A71 EXPRESSION TAG SEQADV 2XPE THR B 0 UNP Q66A71 EXPRESSION TAG SEQRES 1 A 200 MET HIS HIS HIS HIS HIS HIS GLY LYS PRO ILE PRO ASN SEQRES 2 A 200 PRO LEU LEU GLY LEU ASP SER THR GLU ASN LEU TYR PHE SEQRES 3 A 200 GLN GLY ILE ASP PRO PHE THR MET THR GLN THR VAL HIS SEQRES 4 A 200 PHE GLN GLY ASN PRO VAL SER VAL ALA GLY LYS LEU PRO SEQRES 5 A 200 GLN ILE GLY ASP LYS ALA LYS ASP PHE THR LEU VAL ALA SEQRES 6 A 200 LYS ASP LEU SER ASP VAL ALA LEU SER SER PHE ALA GLY SEQRES 7 A 200 LYS ARG LYS VAL LEU ASN ILE PHE PRO SER ILE ASP THR SEQRES 8 A 200 GLY VAL CYS ALA ALA SER VAL ARG LYS PHE ASN GLN LEU SEQRES 9 A 200 ALA GLY GLU LEU GLU ASN THR VAL VAL LEU CYS ILE SER SEQRES 10 A 200 SER ASP LEU PRO PHE ALA GLN SER ARG PHE CYS GLY ALA SEQRES 11 A 200 GLU GLY LEU SER ASN VAL ILE THR LEU SER THR LEU ARG SEQRES 12 A 200 GLY ALA ASP PHE LYS GLN ALA TYR GLY VAL ALA ILE THR SEQRES 13 A 200 GLU GLY PRO LEU ALA GLY LEU THR ALA ARG ALA VAL VAL SEQRES 14 A 200 VAL LEU ASP GLY GLN ASP ASN VAL ILE TYR SER GLU LEU SEQRES 15 A 200 VAL ASN GLU ILE THR THR GLU PRO ASN TYR ASP ALA ALA SEQRES 16 A 200 LEU ALA ALA LEU LYS SEQRES 1 B 200 MET HIS HIS HIS HIS HIS HIS GLY LYS PRO ILE PRO ASN SEQRES 2 B 200 PRO LEU LEU GLY LEU ASP SER THR GLU ASN LEU TYR PHE SEQRES 3 B 200 GLN GLY ILE ASP PRO PHE THR MET THR GLN THR VAL HIS SEQRES 4 B 200 PHE GLN GLY ASN PRO VAL SER VAL ALA GLY LYS LEU PRO SEQRES 5 B 200 GLN ILE GLY ASP LYS ALA LYS ASP PHE THR LEU VAL ALA SEQRES 6 B 200 LYS ASP LEU SER ASP VAL ALA LEU SER SER PHE ALA GLY SEQRES 7 B 200 LYS ARG LYS VAL LEU ASN ILE PHE PRO SER ILE ASP THR SEQRES 8 B 200 GLY VAL CYS ALA ALA SER VAL ARG LYS PHE ASN GLN LEU SEQRES 9 B 200 ALA GLY GLU LEU GLU ASN THR VAL VAL LEU CYS ILE SER SEQRES 10 B 200 SER ASP LEU PRO PHE ALA GLN SER ARG PHE CYS GLY ALA SEQRES 11 B 200 GLU GLY LEU SER ASN VAL ILE THR LEU SER THR LEU ARG SEQRES 12 B 200 GLY ALA ASP PHE LYS GLN ALA TYR GLY VAL ALA ILE THR SEQRES 13 B 200 GLU GLY PRO LEU ALA GLY LEU THR ALA ARG ALA VAL VAL SEQRES 14 B 200 VAL LEU ASP GLY GLN ASP ASN VAL ILE TYR SER GLU LEU SEQRES 15 B 200 VAL ASN GLU ILE THR THR GLU PRO ASN TYR ASP ALA ALA SEQRES 16 B 200 LEU ALA ALA LEU LYS FORMUL 3 HOH *27(H2 O) HELIX 1 1 SER A 41 ALA A 44 5 4 HELIX 2 2 ALA A 63 LEU A 75 1 13 HELIX 3 3 GLY A 111 TYR A 118 1 8 HELIX 4 4 GLU A 124 ALA A 128 5 5 HELIX 5 5 ASN A 158 ALA A 165 1 8 HELIX 6 6 SER B 41 ALA B 44 5 4 HELIX 7 7 ALA B 62 LEU B 75 1 14 HELIX 8 8 LEU B 87 SER B 92 1 6 HELIX 9 9 ASP B 113 TYR B 118 1 6 HELIX 10 10 GLU B 124 ALA B 128 5 5 HELIX 11 11 ASN B 158 ALA B 165 1 8 SHEET 1 AA 2 VAL A 5 HIS A 6 0 SHEET 2 AA 2 PRO A 11 VAL A 12 -1 O VAL A 12 N VAL A 5 SHEET 1 AB 2 VAL A 14 ALA A 15 0 SHEET 2 AB 2 ALA A 121 ILE A 122 -1 O ALA A 121 N ALA A 15 SHEET 1 AC 2 THR A 29 VAL A 31 0 SHEET 2 AC 2 ASP A 37 ALA A 39 -1 O VAL A 38 N LEU A 30 SHEET 1 AD 5 VAL A 103 SER A 107 0 SHEET 2 AD 5 THR A 78 SER A 84 1 O VAL A 80 N ILE A 104 SHEET 3 AD 5 ARG A 47 ILE A 52 1 O ARG A 47 N VAL A 79 SHEET 4 AD 5 ALA A 134 LEU A 138 -1 O ALA A 134 N ILE A 52 SHEET 5 AD 5 VAL A 144 LEU A 149 -1 N ILE A 145 O VAL A 137 SHEET 1 BA 3 GLN B 3 PHE B 7 0 SHEET 2 BA 3 ASN B 10 ALA B 15 -1 O ASN B 10 N PHE B 7 SHEET 3 BA 3 ALA B 121 ILE B 122 -1 O ALA B 121 N ALA B 15 SHEET 1 BB 2 THR B 29 VAL B 31 0 SHEET 2 BB 2 ASP B 37 ALA B 39 -1 O VAL B 38 N LEU B 30 SHEET 1 BC 5 VAL B 103 SER B 107 0 SHEET 2 BC 5 THR B 78 SER B 84 1 O VAL B 80 N ILE B 104 SHEET 3 BC 5 ARG B 47 ILE B 52 1 O ARG B 47 N VAL B 79 SHEET 4 BC 5 ALA B 134 LEU B 138 -1 O ALA B 134 N ILE B 52 SHEET 5 BC 5 VAL B 144 LEU B 149 -1 N ILE B 145 O VAL B 137 SSBOND 1 CYS B 61 CYS B 95 1555 1555 2.03 CISPEP 1 GLN A 8 GLY A 9 0 -3.65 CISPEP 2 LEU B 166 LYS B 167 0 4.74 CRYST1 56.371 63.444 91.394 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017740 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015762 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010942 0.00000