HEADER TRANSCRIPTION 30-AUG-10 2XPS OBSLTE 10-DEC-14 2XPS 4D7M TITLE TETR(D) IN COMPLEX WITH ANHYDROTETRACYCLINE AND MAGNESIUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: TETRACYCLINE REPRESSOR PROTEIN CLASS D; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 2-208; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: C-TERMINUS REMOVED FOR BETTER CRYSTALLIZATION SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 83333; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: K-12; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: DELTA H1 DELTA TRP; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PWH 610 KEYWDS TRANSCRIPTION REGULATOR, TRANSCRIPTION, METAL COORDINATION EXPDTA X-RAY DIFFRACTION AUTHOR D.DALM,N.MATTHES,G.J.PALM,W.HINRICHS REVDAT 2 10-DEC-14 2XPS 1 OBSLTE REVDAT 1 07-SEP-11 2XPS 0 JRNL AUTH D.DALM,G.J.PALM,W.HINRICHS JRNL TITL THE ROLE OF THE METAL ION FOR INDUCTION OF TETR(D) WITH JRNL TITL 2 ANHYDROTETRACYCLINE. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH W.HINRICHS,C.KISKER,M.DUVEL,A.MULLER,K.TOVAR,W.HILLEN, REMARK 1 AUTH 2 W.SAENGER REMARK 1 TITL STRUCTURE OF THE TET REPRESSOR-TETRACYCLINE COMPLEX AND REMARK 1 TITL 2 REGULATION OF ANTIBIOTIC RESISTANCE. REMARK 1 REF SCIENCE V. 264 418 1994 REMARK 1 REFN ISSN 0036-8075 REMARK 1 PMID 8153629 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.37 REMARK 3 DATA CUTOFF (SIGMA(F)) : NONE REMARK 3 COMPLETENESS FOR RANGE (%) : 100.00 REMARK 3 NUMBER OF REFLECTIONS : 19130 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.17407 REMARK 3 R VALUE (WORKING SET) : 0.17239 REMARK 3 FREE R VALUE : 0.20619 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.1 REMARK 3 FREE R VALUE TEST SET COUNT : 1035 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.78 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1384 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.194 REMARK 3 BIN FREE R VALUE SET COUNT : 86 REMARK 3 BIN FREE R VALUE : 0.274 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1717 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 40 REMARK 3 SOLVENT ATOMS : 171 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.1 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.541 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.10 REMARK 3 B22 (A**2) : 1.10 REMARK 3 B33 (A**2) : -2.21 REMARK 3 B12 (A**2) : 0.00 REMARK 3 B13 (A**2) : 0.00 REMARK 3 B23 (A**2) : 0.00 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.126 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.117 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.076 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.102 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1793 ; 0.019 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1210 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2451 ; 1.692 ; 1.995 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2930 ; 0.959 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 222 ; 5.086 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 90 ;36.259 ;23.333 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 306 ;12.381 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;17.086 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 270 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2049 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 378 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1078 ; 1.059 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 434 ; 0.348 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1736 ; 1.771 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 715 ; 2.789 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 715 ; 4.213 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 45 REMARK 3 ORIGIN FOR THE GROUP (A): 18.4986 26.3871 9.4551 REMARK 3 T TENSOR REMARK 3 T11: 0.1206 T22: 0.2126 REMARK 3 T33: 0.1586 T12: 0.0084 REMARK 3 T13: -0.0257 T23: -0.0024 REMARK 3 L TENSOR REMARK 3 L11: 5.5526 L22: 0.0561 REMARK 3 L33: 4.4950 L12: -0.2957 REMARK 3 L13: 4.7293 L23: -0.0201 REMARK 3 S TENSOR REMARK 3 S11: 0.1281 S12: 0.4717 S13: 0.0922 REMARK 3 S21: 0.0643 S22: -0.1275 S23: -0.0336 REMARK 3 S31: 0.2518 S32: 0.2991 S33: -0.0006 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 4 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 46 A 64 REMARK 3 RESIDUE RANGE : A 65 A 93 REMARK 3 RESIDUE RANGE : A 101 A 106 REMARK 3 RESIDUE RANGE : A 107 A 123 REMARK 3 ORIGIN FOR THE GROUP (A): 17.9817 29.7145 33.4506 REMARK 3 T TENSOR REMARK 3 T11: 0.0662 T22: 0.0666 REMARK 3 T33: 0.0899 T12: -0.0413 REMARK 3 T13: -0.0188 T23: -0.0068 REMARK 3 L TENSOR REMARK 3 L11: 1.3842 L22: 0.6842 REMARK 3 L33: 3.8335 L12: 0.1831 REMARK 3 L13: 0.3412 L23: -0.4993 REMARK 3 S TENSOR REMARK 3 S11: 0.0027 S12: 0.1304 S13: -0.0293 REMARK 3 S21: -0.0164 S22: 0.0331 S23: 0.1441 REMARK 3 S31: 0.1693 S32: -0.3651 S33: -0.0358 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 156 A 164 REMARK 3 RESIDUE RANGE : A 165 A 181 REMARK 3 ORIGIN FOR THE GROUP (A): 49.7205 19.7835 31.2071 REMARK 3 T TENSOR REMARK 3 T11: 0.2299 T22: 0.1905 REMARK 3 T33: 0.0922 T12: 0.0241 REMARK 3 T13: 0.0166 T23: -0.0308 REMARK 3 L TENSOR REMARK 3 L11: 9.6583 L22: 4.4124 REMARK 3 L33: 2.5799 L12: 3.1720 REMARK 3 L13: -0.1880 L23: 0.9212 REMARK 3 S TENSOR REMARK 3 S11: -0.3920 S12: 1.1204 S13: -0.3145 REMARK 3 S21: -0.2257 S22: 0.2475 S23: -0.0641 REMARK 3 S31: 0.5348 S32: 0.1886 S33: 0.1445 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 94 A 100 REMARK 3 RESIDUE RANGE : A 124 A 155 REMARK 3 RESIDUE RANGE : A 182 A 208 REMARK 3 ORIGIN FOR THE GROUP (A): 29.3856 31.7649 39.6115 REMARK 3 T TENSOR REMARK 3 T11: 0.0897 T22: 0.0246 REMARK 3 T33: 0.0826 T12: -0.0138 REMARK 3 T13: 0.0046 T23: -0.0050 REMARK 3 L TENSOR REMARK 3 L11: 1.2409 L22: 0.4396 REMARK 3 L33: 1.5144 L12: 0.3378 REMARK 3 L13: 0.0330 L23: -0.2218 REMARK 3 S TENSOR REMARK 3 S11: 0.0117 S12: 0.0021 S13: 0.0088 REMARK 3 S21: 0.0366 S22: -0.0200 S23: 0.0063 REMARK 3 S31: 0.0344 S32: -0.0507 S33: 0.0083 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 222 A 222 REMARK 3 ORIGIN FOR THE GROUP (A): 19.2871 34.5226 34.4052 REMARK 3 T TENSOR REMARK 3 T11: 0.1247 T22: 0.0885 REMARK 3 T33: 0.1087 T12: -0.0091 REMARK 3 T13: -0.0176 T23: -0.0005 REMARK 3 L TENSOR REMARK 3 L11: 1.3885 L22: 15.6678 REMARK 3 L33: 10.6735 L12: -2.6033 REMARK 3 L13: -0.0674 L23: -5.5622 REMARK 3 S TENSOR REMARK 3 S11: -0.1619 S12: 0.2420 S13: 0.0884 REMARK 3 S21: 0.1091 S22: 0.0025 S23: -0.0092 REMARK 3 S31: -0.3697 S32: -0.4279 S33: 0.1594 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2XPS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 31-AUG-10. REMARK 100 THE PDBE ID CODE IS EBI-45063. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-MAY-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X13 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8011 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19130 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.75 REMARK 200 RESOLUTION RANGE LOW (A) : 31.73 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 16.7 REMARK 200 R MERGE (I) : 0.09 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.70 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.78 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.6 REMARK 200 R MERGE FOR SHELL (I) : 0.42 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.00 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 2TCT REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM TRIS-HCL PH 9.0 1 M REMARK 280 (NH4)2SO4 70 MM NACL 10 MM MGCL2 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.80500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 32.80500 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 89.29500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 32.80500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 44.64750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 32.80500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 133.94250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 32.80500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 133.94250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 32.80500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 44.64750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 32.80500 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 32.80500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 89.29500 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 32.80500 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 32.80500 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 89.29500 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 32.80500 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 133.94250 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 32.80500 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 44.64750 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 32.80500 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 44.64750 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 32.80500 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 133.94250 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 32.80500 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 32.80500 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 89.29500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -96.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 65.61000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 65.61000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 122 O HOH A 2103 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 6 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 62 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG A 80 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 LEU A 146 CA - CB - CG ANGL. DEV. = 14.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 204 -120.62 45.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 223 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TDC A 222 O12 REMARK 620 2 HOH A2079 O 97.8 REMARK 620 3 TDC A 222 O11 81.9 88.3 REMARK 620 4 HIS A 100 NE2 90.4 88.4 171.1 REMARK 620 5 HOH A2121 O 90.2 171.2 89.2 95.3 REMARK 620 6 HOH A2078 O 171.7 85.9 90.8 97.2 85.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TDC A 222 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 223 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 304 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2XGC RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A DESIGNED HETERODIMERIC VARIANT T REMARK 900 -A(I)B OF THE TETRACYCLINE REPRESSOR REMARK 900 RELATED ID: 2XPW RELATED DB: PDB REMARK 900 TETR(D) IN COMPLEX WITH OXYTETRACYCLINE AND MAGNESIUM. REMARK 900 RELATED ID: 1BJZ RELATED DB: PDB REMARK 900 TETRACYCLINE CHELATED MG2+ -ION INITIATES HELIX UNWINDING REMARK 900 FOR TET REPRESSOR INDUCTION REMARK 900 RELATED ID: 3ZQG RELATED DB: PDB REMARK 900 STRUCTURE OF TETRACYCLINE REPRESSOR IN COMPLEX WITH REMARK 900 ANTIINDUCER PEPTIDE-TAP2 REMARK 900 RELATED ID: 2X9D RELATED DB: PDB REMARK 900 TET REPRESSOR (CLASS D) IN COMPLEX WITH ISO-7- REMARK 900 CHLORTETRACYCLINE REMARK 900 RELATED ID: 3ZQH RELATED DB: PDB REMARK 900 STRUCTURE OF TETRACYCLINE REPRESSOR IN COMPLEX WITH REMARK 900 INDUCER PEPTIDE-TIP3 REMARK 900 RELATED ID: 2TRT RELATED DB: PDB REMARK 900 TETRACYCLINE REPRESSOR CLASS D REMARK 900 RELATED ID: 2XPV RELATED DB: PDB REMARK 900 TETR(D) IN COMPLEX WITH MINOCYCLINE AND MG. REMARK 900 RELATED ID: 2VKV RELATED DB: PDB REMARK 900 TETR (BD) VARIANT L17G WITH REVERSE PHENOTYPE REMARK 900 RELATED ID: 1ORK RELATED DB: PDB REMARK 900 TET REPRESSOR, CLASS D IN COMPLEX WITH 9-(N,N- REMARK 900 DIMETHYLGLYCYLAMIDO)-6-DEMETHYL-6-DEOXY-TETRACYCLINE REMARK 900 RELATED ID: 2XGE RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A DESIGNED HETERODIMERIC VARIANT T REMARK 900 -A(A)B OF THE TETRACYCLINE REPRESSOR REMARK 900 RELATED ID: 1A6I RELATED DB: PDB REMARK 900 TET REPRESSOR, CLASS D VARIANT REMARK 900 RELATED ID: 2X6O RELATED DB: PDB REMARK 900 TET REPRESSOR CLASS D IN COMPLEX WITH 7-CHLOR-2- REMARK 900 CYANO-ISO-TETRACYCLINE REMARK 900 RELATED ID: 1QPI RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF TETRACYCLINE REPRESSOR/OPERATOR REMARK 900 COMPLEX REMARK 900 RELATED ID: 2VKE RELATED DB: PDB REMARK 900 TET REPRESSOR CLASS D COMPLEXED WITH COBALT AND REMARK 900 TETRACYCLINE REMARK 900 RELATED ID: 2XGD RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A DESIGNED HOMODIMERIC VARIANT T- REMARK 900 A(L)A(L) OF THE TETRACYCLINE REPRESSOR REMARK 900 RELATED ID: 1DU7 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF TET REPRESSOR CLASS D WITH 4- REMARK 900 EPI- TETRACYCLINE REMARK 900 RELATED ID: 2XRL RELATED DB: PDB REMARK 900 TET-REPRESSOR CLASS D T103A WITH DOXYCYCLINE REMARK 900 RELATED ID: 2XPT RELATED DB: PDB REMARK 900 TETR(D) IN COMPLEX WITH MINOCYCLINE AND MAGNESIUM. REMARK 900 RELATED ID: 2XPU RELATED DB: PDB REMARK 900 TETR(D) IN COMPLEX WITH ANHYDROTETRACYCLINE. REMARK 900 RELATED ID: 2XB5 RELATED DB: PDB REMARK 900 TET REPRESSOR (CLASS D) IN COMPLEX WITH 7- REMARK 900 IODOTETRACYCLINE REMARK 900 RELATED ID: 3ZQI RELATED DB: PDB REMARK 900 STRUCTURE OF TETRACYCLINE REPRESSOR IN COMPLEX WITH REMARK 900 INDUCER PEPTIDE-TIP2 REMARK 900 RELATED ID: 3ZQF RELATED DB: PDB REMARK 900 STRUCTURE OF TETRACYCLINE REPRESSOR IN COMPLEX WITH REMARK 900 ANTIINDUCER PEPTIDE-TAP1 REMARK 900 RELATED ID: 1BJ0 RELATED DB: PDB REMARK 900 TETRACYCLINE CHELATED MG2+ -ION INITIATES HELIX UNWINDING REMARK 900 FOR TET REPRESSOR INDUCTION REMARK 900 RELATED ID: 2TCT RELATED DB: PDB REMARK 900 RELATED ID: 1BJY RELATED DB: PDB REMARK 900 TETRACYCLINE CHELATED MG2+ -ION INITIATES HELIX UNWINDING REMARK 900 FOR TET REPRESSOR INDUCTION DBREF 2XPS A 2 208 UNP P0ACT4 TETR4_ECOLX 2 208 SEQADV 2XPS SER A 2 UNP P0ACT4 ALA 2 CLONING ARTIFACT SEQRES 1 A 207 SER ARG LEU ASN ARG GLU SER VAL ILE ASP ALA ALA LEU SEQRES 2 A 207 GLU LEU LEU ASN GLU THR GLY ILE ASP GLY LEU THR THR SEQRES 3 A 207 ARG LYS LEU ALA GLN LYS LEU GLY ILE GLU GLN PRO THR SEQRES 4 A 207 LEU TYR TRP HIS VAL LYS ASN LYS ARG ALA LEU LEU ASP SEQRES 5 A 207 ALA LEU ALA VAL GLU ILE LEU ALA ARG HIS HIS ASP TYR SEQRES 6 A 207 SER LEU PRO ALA ALA GLY GLU SER TRP GLN SER PHE LEU SEQRES 7 A 207 ARG ASN ASN ALA MET SER PHE ARG ARG ALA LEU LEU ARG SEQRES 8 A 207 TYR ARG ASP GLY ALA LYS VAL HIS LEU GLY THR ARG PRO SEQRES 9 A 207 ASP GLU LYS GLN TYR ASP THR VAL GLU THR GLN LEU ARG SEQRES 10 A 207 PHE MET THR GLU ASN GLY PHE SER LEU ARG ASP GLY LEU SEQRES 11 A 207 TYR ALA ILE SER ALA VAL SER HIS PHE THR LEU GLY ALA SEQRES 12 A 207 VAL LEU GLU GLN GLN GLU HIS THR ALA ALA LEU THR ASP SEQRES 13 A 207 ARG PRO ALA ALA PRO ASP GLU ASN LEU PRO PRO LEU LEU SEQRES 14 A 207 ARG GLU ALA LEU GLN ILE MET ASP SER ASP ASP GLY GLU SEQRES 15 A 207 GLN ALA PHE LEU HIS GLY LEU GLU SER LEU ILE ARG GLY SEQRES 16 A 207 PHE GLU VAL GLN LEU THR ALA LEU LEU GLN ILE VAL HET TDC A 222 31 HET MG A 223 1 HET SO4 A 301 5 HET CL A 302 1 HET CL A 303 1 HET CL A 304 1 HETNAM TDC 5A,6-ANHYDROTETRACYCLINE HETNAM MG MAGNESIUM ION HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION FORMUL 2 TDC C22 H22 N2 O7 FORMUL 3 MG MG 2+ FORMUL 4 SO4 O4 S 2- FORMUL 5 CL 3(CL 1-) FORMUL 6 HOH *171(H2 O) HELIX 1 1 ASN A 5 LEU A 25 1 21 HELIX 2 2 THR A 26 GLY A 35 1 10 HELIX 3 3 GLU A 37 VAL A 45 1 9 HELIX 4 4 ASN A 47 HIS A 64 1 18 HELIX 5 5 SER A 74 TYR A 93 1 20 HELIX 6 6 ASP A 95 LEU A 101 1 7 HELIX 7 7 ASP A 106 LYS A 108 5 3 HELIX 8 8 GLN A 109 ASN A 123 1 15 HELIX 9 9 SER A 126 THR A 156 1 31 HELIX 10 10 PRO A 167 ASP A 178 1 12 HELIX 11 11 GLY A 182 ALA A 203 1 22 LINK O11 TDC A 222 MG MG A 223 1555 1555 2.05 LINK O12 TDC A 222 MG MG A 223 1555 1555 1.98 LINK MG MG A 223 O HOH A2121 1555 10665 2.10 LINK MG MG A 223 NE2 HIS A 100 1555 1555 2.13 LINK MG MG A 223 O HOH A2078 1555 1555 2.10 LINK MG MG A 223 O HOH A2079 1555 1555 2.08 SITE 1 AC1 19 HIS A 64 SER A 67 ASN A 82 PHE A 86 SITE 2 AC1 19 HIS A 100 THR A 103 ARG A 104 PRO A 105 SITE 3 AC1 19 VAL A 113 GLN A 116 ILE A 134 SER A 138 SITE 4 AC1 19 MET A 177 MG A 223 HOH A2078 HOH A2079 SITE 5 AC1 19 HOH A2116 HOH A2121 HOH A2171 SITE 1 AC2 5 HIS A 100 TDC A 222 HOH A2078 HOH A2079 SITE 2 AC2 5 HOH A2121 SITE 1 AC3 4 ARG A 62 HIS A 63 ARG A 92 TYR A 93 SITE 1 AC4 5 SER A 2 ARG A 3 SER A 74 SER A 77 SITE 2 AC4 5 HOH A2019 SITE 1 AC5 4 LEU A 4 GLN A 76 ARG A 80 HOH A2159 SITE 1 AC6 2 TRP A 75 GLN A 76 CRYST1 65.610 65.610 178.590 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015242 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015242 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005599 0.00000