HEADER TRANSCRIPTION 30-AUG-10 2XPT OBSLTE 10-DEC-14 2XPT 4D7N TITLE TETR(D) IN COMPLEX WITH ANHYDROTETRACYCLINE AND POTASSIUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: TETRACYCLINE REPRESSOR PROTEIN CLASS D; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 2-208; COMPND 5 SYNONYM: TETRACYCLINE REPRESSOR; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: C-TERMINUS REMOVED SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 83333; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: K-12; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: DELTA H1 DELTA TRP; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PWH 610 KEYWDS TRANSCRIPTION, TRANSCRIPTION REGULATOR, HELIX-TURN-HELIX, METAL KEYWDS 2 COORDINATION EXPDTA X-RAY DIFFRACTION AUTHOR D.DALM,G.J.PALM,W.HINRICHS REVDAT 2 10-DEC-14 2XPT 1 OBSLTE REVDAT 1 07-SEP-11 2XPT 0 JRNL AUTH D.DALM,G.J.PALM,W.HINRICHS JRNL TITL THE ROLE OF THE METAL ION FOR INDUCTION OF TETR(D) WITH JRNL TITL 2 ANHYDROTETRACYCLINE. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH W.HINRICHS,C.KISKER,M.DUVEL,A.MULLER,K.TOVAR,W.HILLEN, REMARK 1 AUTH 2 W.SAENGER REMARK 1 TITL STRUCTURE OF THE TET REPRESSOR-TETRACYCLINE COMPLEX AND REMARK 1 TITL 2 REGULATION OF ANTIBIOTIC RESISTANCE. REMARK 1 REF SCIENCE V. 264 418 1994 REMARK 1 REFN ISSN 0036-8075 REMARK 1 PMID 8153629 REMARK 2 REMARK 2 RESOLUTION. 1.89 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.89 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 63.63 REMARK 3 DATA CUTOFF (SIGMA(F)) : NONE REMARK 3 COMPLETENESS FOR RANGE (%) : 99.62 REMARK 3 NUMBER OF REFLECTIONS : 15970 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.17407 REMARK 3 R VALUE (WORKING SET) : 0.17023 REMARK 3 FREE R VALUE : 0.22085 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.7 REMARK 3 FREE R VALUE TEST SET COUNT : 1324 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.89 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.99 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1112 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.92 REMARK 3 BIN R VALUE (WORKING SET) : 0.188 REMARK 3 BIN FREE R VALUE SET COUNT : 115 REMARK 3 BIN FREE R VALUE : 0.318 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1615 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 36 REMARK 3 SOLVENT ATOMS : 173 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.6 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.845 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.10 REMARK 3 B22 (A**2) : 1.10 REMARK 3 B33 (A**2) : -2.20 REMARK 3 B12 (A**2) : 0.00 REMARK 3 B13 (A**2) : 0.00 REMARK 3 B23 (A**2) : 0.00 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.152 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.145 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.100 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.239 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1681 ; 0.023 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1147 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2289 ; 1.852 ; 1.990 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2772 ; 1.040 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 205 ; 5.208 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 86 ;36.644 ;23.140 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 295 ;13.756 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;18.732 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 253 ; 0.124 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1904 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 359 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1001 ; 1.126 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 406 ; 0.379 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1608 ; 1.885 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 680 ; 2.991 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 680 ; 4.359 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 45 REMARK 3 ORIGIN FOR THE GROUP (A): 18.5829 27.1609 9.8793 REMARK 3 T TENSOR REMARK 3 T11: 0.0619 T22: 0.0924 REMARK 3 T33: 0.1072 T12: 0.0229 REMARK 3 T13: -0.0397 T23: -0.0444 REMARK 3 L TENSOR REMARK 3 L11: 2.9929 L22: 0.5868 REMARK 3 L33: 5.2339 L12: 0.1180 REMARK 3 L13: 2.7401 L23: 0.5668 REMARK 3 S TENSOR REMARK 3 S11: 0.1877 S12: 0.3358 S13: -0.1532 REMARK 3 S21: 0.1632 S22: 0.0547 S23: -0.1619 REMARK 3 S31: 0.3920 S32: 0.4412 S33: -0.2424 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 4 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 46 A 64 REMARK 3 RESIDUE RANGE : A 65 A 93 REMARK 3 RESIDUE RANGE : A 101 A 106 REMARK 3 RESIDUE RANGE : A 107 A 123 REMARK 3 ORIGIN FOR THE GROUP (A): 18.8489 31.4124 33.9226 REMARK 3 T TENSOR REMARK 3 T11: 0.1020 T22: 0.1725 REMARK 3 T33: 0.2040 T12: 0.0218 REMARK 3 T13: -0.0073 T23: -0.0568 REMARK 3 L TENSOR REMARK 3 L11: 0.4334 L22: 0.3853 REMARK 3 L33: 3.4625 L12: 0.3525 REMARK 3 L13: 0.2595 L23: 0.0584 REMARK 3 S TENSOR REMARK 3 S11: -0.0183 S12: 0.0700 S13: -0.0071 REMARK 3 S21: 0.0027 S22: 0.0026 S23: 0.1140 REMARK 3 S31: 0.0986 S32: -0.2471 S33: 0.0157 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 165 A 181 REMARK 3 ORIGIN FOR THE GROUP (A): 50.0199 20.1469 35.7542 REMARK 3 T TENSOR REMARK 3 T11: 0.3038 T22: 0.2352 REMARK 3 T33: 0.2348 T12: 0.0801 REMARK 3 T13: -0.0170 T23: -0.0238 REMARK 3 L TENSOR REMARK 3 L11: 13.1358 L22: 3.6846 REMARK 3 L33: 1.8339 L12: 1.9525 REMARK 3 L13: -0.9394 L23: 0.1406 REMARK 3 S TENSOR REMARK 3 S11: -0.2102 S12: 1.1651 S13: -0.2907 REMARK 3 S21: -0.3186 S22: 0.0397 S23: -0.0330 REMARK 3 S31: 0.6189 S32: -0.0080 S33: 0.1705 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 94 A 100 REMARK 3 RESIDUE RANGE : A 124 A 152 REMARK 3 RESIDUE RANGE : A 182 A 208 REMARK 3 ORIGIN FOR THE GROUP (A): 30.0778 33.6313 40.8726 REMARK 3 T TENSOR REMARK 3 T11: 0.0580 T22: 0.0457 REMARK 3 T33: 0.0664 T12: 0.0183 REMARK 3 T13: 0.0015 T23: -0.0093 REMARK 3 L TENSOR REMARK 3 L11: 2.0348 L22: 0.5929 REMARK 3 L33: 1.9689 L12: 0.5234 REMARK 3 L13: 0.4960 L23: -0.1290 REMARK 3 S TENSOR REMARK 3 S11: 0.0402 S12: 0.1123 S13: -0.0160 REMARK 3 S21: 0.0448 S22: -0.0663 S23: 0.0609 REMARK 3 S31: 0.0429 S32: -0.0119 S33: 0.0261 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 222 A 222 REMARK 3 ORIGIN FOR THE GROUP (A): 20.4378 36.4844 34.6359 REMARK 3 T TENSOR REMARK 3 T11: 0.1974 T22: 0.2785 REMARK 3 T33: 0.1673 T12: 0.1473 REMARK 3 T13: -0.0236 T23: 0.0505 REMARK 3 L TENSOR REMARK 3 L11: 0.1159 L22: 51.1422 REMARK 3 L33: 10.0527 L12: -0.3488 REMARK 3 L13: 0.3831 L23: -0.2614 REMARK 3 S TENSOR REMARK 3 S11: 0.0991 S12: 0.1581 S13: 0.0451 REMARK 3 S21: -0.3392 S22: -0.5078 S23: 0.5330 REMARK 3 S31: -0.4523 S32: -0.1085 S33: 0.4087 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. REMARK 4 REMARK 4 2XPT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 31-AUG-10. REMARK 100 THE PDBE ID CODE IS EBI-45179. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-DEC-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X13 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8031 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD (SX-165) REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15970 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.89 REMARK 200 RESOLUTION RANGE LOW (A) : 63.63 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.4 REMARK 200 R MERGE (I) : 0.09 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.90 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.89 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.99 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.6 REMARK 200 R MERGE FOR SHELL (I) : 0.47 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.30 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC5 REMARK 200 STARTING MODEL: PDB ENTRY 2TCT REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 13% PEG 6000, 2 M KCL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.07050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 34.07050 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 89.44500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 34.07050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 44.72250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 34.07050 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 134.16750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 34.07050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 134.16750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 34.07050 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 44.72250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 34.07050 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 34.07050 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 89.44500 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 34.07050 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 34.07050 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 89.44500 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 34.07050 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 134.16750 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 34.07050 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 44.72250 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 34.07050 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 44.72250 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 34.07050 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 134.16750 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 34.07050 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 34.07050 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 89.44500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -78.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 68.14100 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 68.14100 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 154 REMARK 465 LEU A 155 REMARK 465 THR A 156 REMARK 465 ASP A 157 REMARK 465 ARG A 158 REMARK 465 PRO A 159 REMARK 465 ALA A 160 REMARK 465 ALA A 161 REMARK 465 PRO A 162 REMARK 465 ASP A 163 REMARK 465 GLU A 164 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ALA A 153 CA C O CB REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 58 CD GLU A 58 OE1 0.081 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 171 NE - CZ - NH1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG A 171 NE - CZ - NH2 ANGL. DEV. = -5.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 66 65.41 -101.88 REMARK 500 LEU A 204 -123.99 50.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A1210 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A2171 O REMARK 620 2 THR A 103 OG1 104.4 REMARK 620 3 HIS A 100 NE2 104.4 86.8 REMARK 620 4 TDC A1209 O12 66.7 142.6 62.6 REMARK 620 5 HOH A2133 O 171.7 71.2 68.7 112.3 REMARK 620 6 THR A 103 O 123.3 70.1 130.4 146.3 62.5 REMARK 620 7 TDC A1209 O11 87.0 157.2 109.8 60.1 99.7 87.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A1214 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 172 OE1 REMARK 620 2 HOH A2046 O 86.7 REMARK 620 3 GLU A 172 OE1 123.4 132.8 REMARK 620 4 HOH A2046 O 134.8 109.8 75.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TDC A1209 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A1210 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A1211 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A1212 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A1213 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A1214 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2XGC RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A DESIGNED HETERODIMERIC VARIANT T REMARK 900 -A(I)B OF THE TETRACYCLINE REPRESSOR REMARK 900 RELATED ID: 2XPW RELATED DB: PDB REMARK 900 TETR(D) IN COMPLEX WITH OXYTETRACYCLINE AND MAGNESIUM. REMARK 900 RELATED ID: 3ZQG RELATED DB: PDB REMARK 900 STRUCTURE OF TETRACYCLINE REPRESSOR IN COMPLEX WITH REMARK 900 ANTIINDUCER PEPTIDE-TAP2 REMARK 900 RELATED ID: 2X9D RELATED DB: PDB REMARK 900 TET REPRESSOR (CLASS D) IN COMPLEX WITH ISO-7- REMARK 900 CHLORTETRACYCLINE REMARK 900 RELATED ID: 1BJZ RELATED DB: PDB REMARK 900 TETRACYCLINE CHELATED MG2+ -ION INITIATES HELIX UNWINDING REMARK 900 FOR TET REPRESSOR INDUCTION REMARK 900 RELATED ID: 3ZQH RELATED DB: PDB REMARK 900 STRUCTURE OF TETRACYCLINE REPRESSOR IN COMPLEX WITH REMARK 900 INDUCER PEPTIDE-TIP3 REMARK 900 RELATED ID: 2TRT RELATED DB: PDB REMARK 900 TETRACYCLINE REPRESSOR CLASS D REMARK 900 RELATED ID: 2XPV RELATED DB: PDB REMARK 900 TETR(D) IN COMPLEX WITH MINOCYCLINE AND MG. REMARK 900 RELATED ID: 2VKV RELATED DB: PDB REMARK 900 TETR (BD) VARIANT L17G WITH REVERSE PHENOTYPE REMARK 900 RELATED ID: 1ORK RELATED DB: PDB REMARK 900 TET REPRESSOR, CLASS D IN COMPLEX WITH 9-(N,N- REMARK 900 DIMETHYLGLYCYLAMIDO)-6-DEMETHYL-6-DEOXY-TETRACYCLINE REMARK 900 RELATED ID: 2XGE RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A DESIGNED HETERODIMERIC VARIANT T REMARK 900 -A(A)B OF THE TETRACYCLINE REPRESSOR REMARK 900 RELATED ID: 1A6I RELATED DB: PDB REMARK 900 TET REPRESSOR, CLASS D VARIANT REMARK 900 RELATED ID: 2X6O RELATED DB: PDB REMARK 900 TET REPRESSOR CLASS D IN COMPLEX WITH 7-CHLOR-2- REMARK 900 CYANO-ISO-TETRACYCLINE REMARK 900 RELATED ID: 2VKE RELATED DB: PDB REMARK 900 TET REPRESSOR CLASS D COMPLEXED WITH COBALT AND REMARK 900 TETRACYCLINE REMARK 900 RELATED ID: 1QPI RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF TETRACYCLINE REPRESSOR/OPERATOR REMARK 900 COMPLEX REMARK 900 RELATED ID: 1DU7 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF TET REPRESSOR CLASS D WITH 4- REMARK 900 EPI- TETRACYCLINE REMARK 900 RELATED ID: 2XGD RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A DESIGNED HOMODIMERIC VARIANT T- REMARK 900 A(L)A(L) OF THE TETRACYCLINE REPRESSOR REMARK 900 RELATED ID: 2XRL RELATED DB: PDB REMARK 900 TET-REPRESSOR CLASS D T103A WITH DOXYCYCLINE REMARK 900 RELATED ID: 2XPU RELATED DB: PDB REMARK 900 TETR(D) IN COMPLEX WITH ANHYDROTETRACYCLINE. REMARK 900 RELATED ID: 2XB5 RELATED DB: PDB REMARK 900 TET REPRESSOR (CLASS D) IN COMPLEX WITH 7- REMARK 900 IODOTETRACYCLINE REMARK 900 RELATED ID: 2XPS RELATED DB: PDB REMARK 900 TETR(D) IN COMPLEX WITH ANHYDROTETRACYCLINE AND REMARK 900 MAGNESIUM REMARK 900 RELATED ID: 3ZQF RELATED DB: PDB REMARK 900 STRUCTURE OF TETRACYCLINE REPRESSOR IN COMPLEX WITH REMARK 900 ANTIINDUCER PEPTIDE-TAP1 REMARK 900 RELATED ID: 3ZQI RELATED DB: PDB REMARK 900 STRUCTURE OF TETRACYCLINE REPRESSOR IN COMPLEX WITH REMARK 900 INDUCER PEPTIDE-TIP2 REMARK 900 RELATED ID: 1BJ0 RELATED DB: PDB REMARK 900 TETRACYCLINE CHELATED MG2+ -ION INITIATES HELIX UNWINDING REMARK 900 FOR TET REPRESSOR INDUCTION REMARK 900 RELATED ID: 1BJY RELATED DB: PDB REMARK 900 TETRACYCLINE CHELATED MG2+ -ION INITIATES HELIX UNWINDING REMARK 900 FOR TET REPRESSOR INDUCTION REMARK 900 RELATED ID: 2TCT RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 C-TERMINUS (209-218) REMOVED FOR BETTER CRYSTALLIZATION DBREF 2XPT A 2 208 UNP P0ACT4 TETR4_ECOLX 2 208 SEQADV 2XPT SER A 2 UNP P0ACT4 ALA 2 CLONING ARTIFACT SEQRES 1 A 207 SER ARG LEU ASN ARG GLU SER VAL ILE ASP ALA ALA LEU SEQRES 2 A 207 GLU LEU LEU ASN GLU THR GLY ILE ASP GLY LEU THR THR SEQRES 3 A 207 ARG LYS LEU ALA GLN LYS LEU GLY ILE GLU GLN PRO THR SEQRES 4 A 207 LEU TYR TRP HIS VAL LYS ASN LYS ARG ALA LEU LEU ASP SEQRES 5 A 207 ALA LEU ALA VAL GLU ILE LEU ALA ARG HIS HIS ASP TYR SEQRES 6 A 207 SER LEU PRO ALA ALA GLY GLU SER TRP GLN SER PHE LEU SEQRES 7 A 207 ARG ASN ASN ALA MET SER PHE ARG ARG ALA LEU LEU ARG SEQRES 8 A 207 TYR ARG ASP GLY ALA LYS VAL HIS LEU GLY THR ARG PRO SEQRES 9 A 207 ASP GLU LYS GLN TYR ASP THR VAL GLU THR GLN LEU ARG SEQRES 10 A 207 PHE MET THR GLU ASN GLY PHE SER LEU ARG ASP GLY LEU SEQRES 11 A 207 TYR ALA ILE SER ALA VAL SER HIS PHE THR LEU GLY ALA SEQRES 12 A 207 VAL LEU GLU GLN GLN GLU HIS THR ALA ALA LEU THR ASP SEQRES 13 A 207 ARG PRO ALA ALA PRO ASP GLU ASN LEU PRO PRO LEU LEU SEQRES 14 A 207 ARG GLU ALA LEU GLN ILE MET ASP SER ASP ASP GLY GLU SEQRES 15 A 207 GLN ALA PHE LEU HIS GLY LEU GLU SER LEU ILE ARG GLY SEQRES 16 A 207 PHE GLU VAL GLN LEU THR ALA LEU LEU GLN ILE VAL HET TDC A1209 31 HET K A1210 1 HET CL A1211 1 HET CL A1212 1 HET CL A1213 1 HET K A1214 1 HETNAM TDC 5A,6-ANHYDROTETRACYCLINE HETNAM K POTASSIUM ION HETNAM CL CHLORIDE ION FORMUL 2 TDC C22 H22 N2 O7 FORMUL 3 K 2(K 1+) FORMUL 4 CL 3(CL 1-) FORMUL 5 HOH *173(H2 O) HELIX 1 1 ASN A 5 LEU A 25 1 21 HELIX 2 2 THR A 26 LEU A 34 1 9 HELIX 3 3 GLU A 37 VAL A 45 1 9 HELIX 4 4 ASN A 47 HIS A 64 1 18 HELIX 5 5 SER A 74 TYR A 93 1 20 HELIX 6 6 ASP A 95 LEU A 101 1 7 HELIX 7 7 ASP A 106 LYS A 108 5 3 HELIX 8 8 GLN A 109 ASN A 123 1 15 HELIX 9 9 SER A 126 THR A 152 1 27 HELIX 10 10 PRO A 167 ASP A 178 1 12 HELIX 11 11 GLY A 182 ALA A 203 1 22 LINK K K A1210 O HOH A2171 1555 1555 2.74 LINK K K A1210 OG1 THR A 103 1555 1555 2.91 LINK K K A1210 NE2 HIS A 100 1555 1555 3.09 LINK K K A1210 O12 TDC A1209 1555 1555 2.63 LINK K K A1210 O HOH A2133 1555 10665 2.84 LINK K K A1210 O THR A 103 1555 1555 2.81 LINK K K A1210 O11 TDC A1209 1555 1555 2.66 LINK K K A1214 O HOH A2046 1555 16655 2.71 LINK K K A1214 OE1 GLU A 172 1555 7545 3.12 LINK K K A1214 O HOH A2046 1555 10665 3.01 LINK K K A1214 OE1 GLU A 172 1555 1555 2.78 SITE 1 AC1 19 HIS A 64 SER A 67 ASN A 82 PHE A 86 SITE 2 AC1 19 HIS A 100 THR A 103 ARG A 104 PRO A 105 SITE 3 AC1 19 THR A 112 VAL A 113 GLN A 116 ILE A 134 SITE 4 AC1 19 SER A 138 LEU A 174 MET A 177 K A1210 SITE 5 AC1 19 HOH A2135 HOH A2171 HOH A2172 SITE 1 AC2 5 HIS A 100 THR A 103 TDC A1209 HOH A2133 SITE 2 AC2 5 HOH A2171 SITE 1 AC3 4 LEU A 4 GLN A 76 ARG A 80 HOH A2158 SITE 1 AC4 4 SER A 2 ARG A 3 SER A 74 SER A 77 SITE 1 AC5 2 ARG A 6 GLU A 7 SITE 1 AC6 2 GLU A 172 HOH A2046 CRYST1 68.141 68.141 178.890 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014675 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014675 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005590 0.00000