HEADER HYDROLASE 31-AUG-10 2XPZ TITLE STRUCTURE OF NATIVE YEAST LTA4 HYDROLASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: LEUKOTRIENE A-4 HYDROLASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 40-671; COMPND 5 SYNONYM: LTA-4 HYDROLASE; COMPND 6 EC: 3.3.2.6; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR C.HELGSTRAND,M.HASAN,H.USYAL,J.Z.HAEGGSTROM,M.M.G.M.THUNNISSEN REVDAT 4 24-APR-19 2XPZ 1 REMARK REVDAT 3 17-JAN-18 2XPZ 1 REMARK REVDAT 2 16-FEB-11 2XPZ 1 JRNL REVDAT 1 29-DEC-10 2XPZ 0 JRNL AUTH C.HELGSTRAND,M.HASAN,H.USYAL,J.Z.HAEGGSTROM, JRNL AUTH 2 M.M.G.M.THUNNISSEN JRNL TITL A LEUKOTRIENE A(4) HYDROLASE-RELATED AMINOPEPTIDASE FROM JRNL TITL 2 YEAST UNDERGOES INDUCED FIT UPON INHIBITOR BINDING. JRNL REF J.MOL.BIOL. V. 406 120 2011 JRNL REFN ISSN 0022-2836 JRNL PMID 21146536 JRNL DOI 10.1016/J.JMB.2010.11.059 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : TWIN_LSQ_F REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 14.98 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.120 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.0 REMARK 3 NUMBER OF REFLECTIONS : 29056 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.300 REMARK 3 FREE R VALUE TEST SET COUNT : 1241 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 11.6310 - 4.5263 0.91 3693 159 0.1368 0.2235 REMARK 3 2 4.5263 - 3.6285 0.93 3643 136 0.1263 0.2095 REMARK 3 3 3.6285 - 3.1805 0.93 3594 150 0.1631 0.2586 REMARK 3 4 3.1805 - 2.8947 0.92 3530 139 0.2140 0.2997 REMARK 3 5 2.8947 - 2.6899 0.90 3459 173 0.2479 0.2831 REMARK 3 6 2.6899 - 2.5331 0.91 3468 142 0.2771 0.3468 REMARK 3 7 2.5331 - 2.4074 0.88 3368 150 0.3207 0.4128 REMARK 3 8 2.4074 - 2.3034 0.79 3004 128 0.3078 0.3579 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.36 REMARK 3 B_SOL : 54.98 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.140 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.46760 REMARK 3 B22 (A**2) : -4.04160 REMARK 3 B33 (A**2) : -0.42610 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: 0.0600 REMARK 3 OPERATOR: -H,L,K REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 5269 REMARK 3 ANGLE : 1.117 7142 REMARK 3 CHIRALITY : 0.068 769 REMARK 3 PLANARITY : 0.004 918 REMARK 3 DIHEDRAL : 18.758 1910 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 40:98) REMARK 3 ORIGIN FOR THE GROUP (A): 13.6325 37.0563 34.5782 REMARK 3 T TENSOR REMARK 3 T11: 0.2801 T22: 0.0348 REMARK 3 T33: 0.0185 T12: -0.0424 REMARK 3 T13: -0.0091 T23: -0.0325 REMARK 3 L TENSOR REMARK 3 L11: 0.2792 L22: 1.0821 REMARK 3 L33: 0.4629 L12: 0.2411 REMARK 3 L13: 0.2260 L23: 0.6907 REMARK 3 S TENSOR REMARK 3 S11: 0.1186 S12: -0.1020 S13: 0.0237 REMARK 3 S21: 0.4898 S22: -0.0367 S23: -0.0526 REMARK 3 S31: 0.1663 S32: -0.0173 S33: -0.0751 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 102:147) REMARK 3 ORIGIN FOR THE GROUP (A): 24.8516 45.6120 34.2463 REMARK 3 T TENSOR REMARK 3 T11: 0.1398 T22: 0.0617 REMARK 3 T33: 0.1228 T12: -0.0101 REMARK 3 T13: -0.0445 T23: -0.0630 REMARK 3 L TENSOR REMARK 3 L11: 0.2376 L22: 0.7228 REMARK 3 L33: 0.7120 L12: 0.4070 REMARK 3 L13: 0.2685 L23: 0.3570 REMARK 3 S TENSOR REMARK 3 S11: 0.0202 S12: -0.0092 S13: 0.0275 REMARK 3 S21: 0.1944 S22: -0.0113 S23: -0.0713 REMARK 3 S31: -0.1073 S32: 0.0498 S33: -0.0081 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 148:223) REMARK 3 ORIGIN FOR THE GROUP (A): 18.9377 37.3577 19.0203 REMARK 3 T TENSOR REMARK 3 T11: 0.0173 T22: -0.0017 REMARK 3 T33: 0.0418 T12: -0.0435 REMARK 3 T13: 0.0243 T23: -0.0074 REMARK 3 L TENSOR REMARK 3 L11: 0.1102 L22: 1.1600 REMARK 3 L33: 0.8043 L12: 0.3571 REMARK 3 L13: 0.0940 L23: 0.2944 REMARK 3 S TENSOR REMARK 3 S11: 0.0164 S12: 0.0013 S13: -0.0359 REMARK 3 S21: 0.0265 S22: 0.0290 S23: -0.1379 REMARK 3 S31: -0.1220 S32: 0.1182 S33: -0.0513 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 224:230) REMARK 3 ORIGIN FOR THE GROUP (A): 9.5967 48.9664 5.1417 REMARK 3 T TENSOR REMARK 3 T11: 0.9232 T22: 0.7494 REMARK 3 T33: 0.7542 T12: 0.0143 REMARK 3 T13: 0.0110 T23: 0.0015 REMARK 3 L TENSOR REMARK 3 L11: 0.1644 L22: 1.3169 REMARK 3 L33: 1.8289 L12: -0.0546 REMARK 3 L13: -0.1392 L23: 1.5370 REMARK 3 S TENSOR REMARK 3 S11: 0.0308 S12: 0.0144 S13: 0.0086 REMARK 3 S21: -0.5438 S22: -0.0264 S23: -0.0210 REMARK 3 S31: -0.5341 S32: -0.0505 S33: -0.0043 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 231:559) REMARK 3 ORIGIN FOR THE GROUP (A): 5.8617 15.3877 22.4962 REMARK 3 T TENSOR REMARK 3 T11: 0.1730 T22: -0.1030 REMARK 3 T33: -0.0447 T12: -0.1001 REMARK 3 T13: 0.1050 T23: 0.0564 REMARK 3 L TENSOR REMARK 3 L11: 0.1016 L22: 0.8960 REMARK 3 L33: 0.7332 L12: 0.1157 REMARK 3 L13: -0.1271 L23: 0.3184 REMARK 3 S TENSOR REMARK 3 S11: 0.0137 S12: 0.0308 S13: -0.0335 REMARK 3 S21: 0.3345 S22: -0.1241 S23: -0.0085 REMARK 3 S31: 0.3573 S32: -0.0362 S33: 0.1151 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 560:671) REMARK 3 ORIGIN FOR THE GROUP (A): 24.1389 3.0388 8.6991 REMARK 3 T TENSOR REMARK 3 T11: 0.2422 T22: 0.0727 REMARK 3 T33: 0.0490 T12: 0.1247 REMARK 3 T13: 0.0497 T23: -0.0330 REMARK 3 L TENSOR REMARK 3 L11: 0.3423 L22: 0.5488 REMARK 3 L33: 0.9627 L12: -0.4218 REMARK 3 L13: -0.5309 L23: 0.7175 REMARK 3 S TENSOR REMARK 3 S11: -0.2127 S12: -0.1025 S13: -0.0178 REMARK 3 S21: 0.3123 S22: 0.1386 S23: 0.0487 REMARK 3 S31: 0.4418 S32: 0.1979 S33: 0.0677 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2XPZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 31-AUG-10. REMARK 100 THE DEPOSITION ID IS D_1290045226. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX II REMARK 200 BEAMLINE : I711 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : SI REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29531 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 15.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 200 DATA REDUNDANCY : 2.200 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.35 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.0 REMARK 200 DATA REDUNDANCY IN SHELL : 1.50 REMARK 200 R MERGE FOR SHELL (I) : 0.24000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: MODEL NATIVE SCLTA4, P3221 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: THE CRYSTALS ARE GROWN IN LIQUID REMARK 280 -LIQUID DIFFUSION EXPERIMENTS USING MELTING POINT CAPILLARIES IN REMARK 280 WHICH 5 UL PROTEIN (6 MG/ML) IN 10 MM TRIS PH 8.5 IS LAYERED ON REMARK 280 5 UL 14% PEG 8000 AND 100 MM TRIS PH 7.3. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.41650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.59850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 49.04800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 49.59850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.41650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 49.04800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 99 REMARK 465 LYS A 100 REMARK 465 ASN A 101 REMARK 465 SER A 227 REMARK 465 LYS A 228 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 98 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 310 O HOH A 2267 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 42 C - N - CA ANGL. DEV. = 9.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 63 55.63 -106.75 REMARK 500 HIS A 71 140.53 -176.47 REMARK 500 TYR A 112 61.86 34.13 REMARK 500 ILE A 293 -102.33 -112.69 REMARK 500 GLU A 295 133.15 -37.89 REMARK 500 ASN A 319 -2.82 64.20 REMARK 500 MET A 320 89.60 -155.12 REMARK 500 HIS A 330 8.18 84.52 REMARK 500 ASN A 334 55.36 -108.81 REMARK 500 ASP A 416 6.20 -69.37 REMARK 500 PHE A 575 77.94 -108.84 REMARK 500 ILE A 590 -67.28 -99.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2020 DISTANCE = 9.30 ANGSTROMS REMARK 525 HOH A2026 DISTANCE = 7.31 ANGSTROMS REMARK 525 HOH A2027 DISTANCE = 8.94 ANGSTROMS REMARK 525 HOH A2029 DISTANCE = 5.93 ANGSTROMS REMARK 525 HOH A2035 DISTANCE = 6.34 ANGSTROMS REMARK 525 HOH A2045 DISTANCE = 7.31 ANGSTROMS REMARK 525 HOH A2064 DISTANCE = 6.11 ANGSTROMS REMARK 525 HOH A2077 DISTANCE = 6.35 ANGSTROMS REMARK 525 HOH A2082 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH A2119 DISTANCE = 6.21 ANGSTROMS REMARK 525 HOH A2241 DISTANCE = 6.15 ANGSTROMS REMARK 525 HOH A2243 DISTANCE = 6.31 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 15P A 1674 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1673 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 340 NE2 REMARK 620 2 HIS A 344 NE2 104.8 REMARK 620 3 GLU A 363 OE2 132.9 84.9 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BU3 A 1672 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1673 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 15P A 1674 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2XQ0 RELATED DB: PDB REMARK 900 STRUCTURE OF YEAST LTA4 HYDROLASE IN COMPLEX WITH BESTATIN REMARK 900 RELATED ID: 2XPY RELATED DB: PDB REMARK 900 STRUCTURE OF NATIVE LEUKOTRIENE A4 HYDROLASE FROM SACCHAROMYCES REMARK 900 CEREVISIAE DBREF 2XPZ A 40 671 UNP Q10740 LKHA4_YEAST 40 671 SEQRES 1 A 632 MET LEU PRO LEU SER ILE GLU GLN ARG ARG PRO SER ARG SEQRES 2 A 632 SER PRO GLU TYR ASP GLN SER THR LEU SER ASN TYR LYS SEQRES 3 A 632 ASP PHE ALA VAL LEU HIS THR ASP LEU ASN LEU SER VAL SEQRES 4 A 632 SER PHE GLU LYS SER ALA ILE SER GLY SER VAL THR PHE SEQRES 5 A 632 GLN LEU LYS LYS LEU HIS GLU GLY LYS ASN LYS SER ASP SEQRES 6 A 632 GLU LEU HIS LEU ASP THR SER TYR LEU ASP VAL GLN GLU SEQRES 7 A 632 VAL HIS ILE ASP GLY SER LYS ALA ASP PHE GLN ILE GLU SEQRES 8 A 632 GLN ARG LYS GLU PRO LEU GLY SER ARG LEU VAL ILE ASN SEQRES 9 A 632 ASN ALA SER CYS ASN ASP ASN PHE THR LEU ASN ILE GLN SEQRES 10 A 632 PHE ARG THR THR ASP LYS CYS THR ALA LEU GLN TRP LEU SEQRES 11 A 632 ASN SER LYS GLN THR LYS GLY GLY LYS PRO TYR VAL PHE SEQRES 12 A 632 SER GLN LEU GLU ALA ILE HIS ALA ARG SER LEU PHE PRO SEQRES 13 A 632 CYS PHE ASP THR PRO SER VAL LYS SER THR PHE THR ALA SEQRES 14 A 632 SER ILE GLU SER PRO LEU PRO VAL VAL PHE SER GLY ILE SEQRES 15 A 632 ARG ILE GLU ASP THR SER LYS ASP THR ASN ILE TYR ARG SEQRES 16 A 632 PHE GLU GLN LYS VAL PRO ILE PRO ALA TYR LEU ILE GLY SEQRES 17 A 632 ILE ALA SER GLY ASP LEU SER SER ALA PRO ILE GLY PRO SEQRES 18 A 632 ARG SER THR VAL TYR THR GLU PRO PHE ARG LEU LYS ASP SEQRES 19 A 632 CYS GLN TRP GLU PHE GLU ASN ASP VAL GLU LYS PHE ILE SEQRES 20 A 632 GLN THR ALA GLU LYS ILE ILE PHE GLU TYR GLU TRP GLY SEQRES 21 A 632 THR TYR ASP ILE LEU VAL ASN VAL ASP SER TYR PRO TYR SEQRES 22 A 632 GLY GLY MET GLU SER PRO ASN MET THR PHE ALA THR PRO SEQRES 23 A 632 THR LEU ILE ALA HIS ASP ARG SER ASN ILE ASP VAL ILE SEQRES 24 A 632 ALA HIS GLU LEU ALA HIS SER TRP SER GLY ASN LEU VAL SEQRES 25 A 632 THR ASN CYS SER TRP ASN HIS PHE TRP LEU ASN GLU GLY SEQRES 26 A 632 TRP THR VAL TYR LEU GLU ARG ARG ILE ILE GLY ALA ILE SEQRES 27 A 632 HIS GLY GLU PRO THR ARG HIS PHE SER ALA LEU ILE GLY SEQRES 28 A 632 TRP SER ASP LEU GLN ASN SER ILE ASP SER MET LYS ASP SEQRES 29 A 632 PRO GLU ARG PHE SER THR LEU VAL GLN ASN LEU ASN ASP SEQRES 30 A 632 ASN THR ASP PRO ASP ASP ALA PHE SER THR VAL PRO TYR SEQRES 31 A 632 GLU LYS GLY PHE ASN LEU LEU PHE HIS LEU GLU THR ILE SEQRES 32 A 632 LEU GLY GLY LYS ALA GLU PHE ASP PRO PHE ILE ARG HIS SEQRES 33 A 632 TYR PHE LYS LYS PHE ALA LYS LYS SER LEU ASP THR PHE SEQRES 34 A 632 GLN PHE LEU ASP THR LEU TYR GLU PHE TYR PRO GLU LYS SEQRES 35 A 632 LYS GLU ILE LEU ASP SER VAL ASP TRP GLU THR TRP LEU SEQRES 36 A 632 TYR LYS PRO GLY MET PRO PRO ARG PRO HIS PHE ILE THR SEQRES 37 A 632 ALA LEU ALA ASP ASN VAL TYR GLN LEU ALA ASP LYS TRP SEQRES 38 A 632 VAL GLU MET ALA GLN HIS LEU LYS THR THR GLU ASP PHE SEQRES 39 A 632 ARG SER GLU PHE ASN ALA ILE ASP ILE LYS ASP PHE ASN SEQRES 40 A 632 SER ASN GLN LEU VAL LEU PHE LEU GLU THR LEU THR GLN SEQRES 41 A 632 ASN GLY HIS SER ASN LYS LYS PRO LYS ASP PHE ASP TRP SEQRES 42 A 632 ALA LYS PHE PRO VAL ALA SER ARG ALA LEU LEU ASP ILE SEQRES 43 A 632 TYR GLN ASP ASN ILE VAL LYS SER GLN ASN ALA GLU VAL SEQRES 44 A 632 VAL PHE LYS MET PHE LYS PHE GLN ILE PHE ALA LYS LEU SEQRES 45 A 632 GLN GLU GLU TYR LYS HIS LEU ALA ASP TRP LEU GLY THR SEQRES 46 A 632 VAL GLY ARG MET LYS PHE VAL ARG PRO GLY TYR ARG LEU SEQRES 47 A 632 LEU ASN SER VAL ASP ARG ARG LEU ALA LEU ALA THR PHE SEQRES 48 A 632 ASP LYS PHE LYS ASP THR TYR HIS PRO ILE CYS LYS ALA SEQRES 49 A 632 LEU VAL LYS GLN ASP LEU GLY LEU HET BU3 A1672 6 HET ZN A1673 1 HET 15P A1674 15 HETNAM BU3 (R,R)-2,3-BUTANEDIOL HETNAM ZN ZINC ION HETNAM 15P POLYETHYLENE GLYCOL (N=34) HETSYN 15P PEG 1500 FORMUL 2 BU3 C4 H10 O2 FORMUL 3 ZN ZN 2+ FORMUL 4 15P C69 H140 O35 FORMUL 5 HOH *474(H2 O) HELIX 1 1 SER A 44 ARG A 49 1 6 HELIX 2 2 HIS A 189 LEU A 193 5 5 HELIX 3 3 PRO A 242 ILE A 246 5 5 HELIX 4 4 GLU A 267 PHE A 269 5 3 HELIX 5 5 ARG A 270 ASN A 280 1 11 HELIX 6 6 ASP A 281 ILE A 293 1 13 HELIX 7 7 THR A 324 ILE A 328 5 5 HELIX 8 8 VAL A 337 HIS A 344 1 8 HELIX 9 9 PHE A 359 GLY A 379 1 21 HELIX 10 10 GLY A 379 MET A 401 1 23 HELIX 11 11 ASP A 419 PHE A 424 5 6 HELIX 12 12 SER A 425 LEU A 443 1 19 HELIX 13 13 GLY A 445 PHE A 460 1 16 HELIX 14 14 ASP A 466 TYR A 478 1 13 HELIX 15 15 LYS A 481 ASP A 486 1 6 HELIX 16 16 ASP A 489 LYS A 496 1 8 HELIX 17 17 THR A 507 LEU A 527 1 21 HELIX 18 18 THR A 529 PHE A 537 1 9 HELIX 19 19 ASN A 546 GLN A 559 1 14 HELIX 20 20 PHE A 575 TYR A 586 1 12 HELIX 21 21 GLN A 587 LYS A 592 1 6 HELIX 22 22 ASN A 595 ALA A 609 1 15 HELIX 23 23 LEU A 611 GLU A 613 5 3 HELIX 24 24 GLU A 614 LEU A 622 1 9 HELIX 25 25 ARG A 627 ASP A 642 1 16 HELIX 26 26 ASP A 642 LYS A 654 1 13 HELIX 27 27 ASP A 655 TYR A 657 5 3 HELIX 28 28 HIS A 658 LEU A 669 1 12 SHEET 1 AA 8 SER A 123 LYS A 124 0 SHEET 2 AA 8 LEU A 113 ILE A 120 -1 O ILE A 120 N SER A 123 SHEET 3 AA 8 ASN A 150 THR A 159 -1 O ASN A 154 N HIS A 119 SHEET 4 AA 8 ALA A 84 LYS A 95 -1 O ILE A 85 N THR A 159 SHEET 5 AA 8 PHE A 67 SER A 79 -1 O ALA A 68 N LYS A 94 SHEET 6 AA 8 SER A 204 GLU A 211 1 O THR A 205 N THR A 72 SHEET 7 AA 8 ILE A 232 ILE A 241 -1 O TYR A 233 N ILE A 210 SHEET 8 AA 8 ILE A 221 ARG A 222 -1 O ILE A 221 N GLU A 236 SHEET 1 AB 3 LEU A 106 THR A 110 0 SHEET 2 AB 3 SER A 138 ILE A 142 -1 O SER A 138 N THR A 110 SHEET 3 AB 3 PHE A 127 ILE A 129 -1 O GLN A 128 N VAL A 141 SHEET 1 AC 4 LEU A 166 LEU A 169 0 SHEET 2 AC 4 TYR A 180 SER A 183 -1 O TYR A 180 N LEU A 169 SHEET 3 AC 4 ILE A 248 SER A 250 -1 O ILE A 248 N SER A 183 SHEET 4 AC 4 VAL A 216 PHE A 218 -1 O VAL A 217 N ALA A 249 SHEET 1 AD 4 SER A 254 GLY A 259 0 SHEET 2 AD 4 SER A 262 THR A 266 -1 O SER A 262 N ILE A 258 SHEET 3 AD 4 ILE A 303 VAL A 305 1 O ILE A 303 N TYR A 265 SHEET 4 AD 4 THR A 321 ALA A 323 1 O THR A 321 N LEU A 304 SHEET 1 AE 2 THR A 352 ASN A 353 0 SHEET 2 AE 2 SER A 464 LEU A 465 1 N LEU A 465 O THR A 352 LINK ZN ZN A1673 NE2 HIS A 340 1555 1555 2.15 LINK ZN ZN A1673 NE2 HIS A 344 1555 1555 2.32 LINK ZN ZN A1673 OE2 GLU A 363 1555 1555 2.14 CISPEP 1 LEU A 43 SER A 44 0 3.50 CISPEP 2 SER A 53 PRO A 54 0 1.29 CISPEP 3 GLU A 134 PRO A 135 0 1.17 CISPEP 4 GLU A 186 ALA A 187 0 4.01 SITE 1 AC1 5 GLN A 173 THR A 174 GLY A 623 THR A 656 SITE 2 AC1 5 HOH A2464 SITE 1 AC2 3 HIS A 340 HIS A 344 GLU A 363 SITE 1 AC3 12 VAL A 216 VAL A 217 PHE A 218 GLY A 220 SITE 2 AC3 12 ARG A 222 ASP A 229 TYR A 233 PHE A 235 SITE 3 AC3 12 TYR A 265 MET A 320 HOH A2473 HOH A2474 CRYST1 70.833 98.096 99.197 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014118 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010194 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010081 0.00000