HEADER MEMBRANE PROTEIN 07-SEP-10 2XQS TITLE MICROSCOPIC ROTARY MECHANISM OF ION TRANSLOCATION IN THE FO COMPLEX OF TITLE 2 ATP SYNTHASES COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATP SYNTHASE C CHAIN; COMPND 3 CHAIN: A, B, C, D, E; COMPND 4 SYNONYM: C15_RING SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARTHROSPIRA PLATENSIS; SOURCE 3 ORGANISM_TAXID: 118562 KEYWDS MEMBRANE PROTEIN, F1FO-ATP SYNTHASE ROTOR, C-RING, ION (PROTON, H+)- KEYWDS 2 TRANSLOCATION, N, N'- DICYCLOHEXYLCARBODIIMIDE (DCCD) INHIBITOR EXPDTA X-RAY DIFFRACTION AUTHOR D.POGORYELOV,A.KRAH,J.LANGER,O.YILDIZ,J.D.FARALDO-GOMEZ,T.MEIER REVDAT 3 20-DEC-23 2XQS 1 REMARK LINK REVDAT 2 22-JUN-11 2XQS 1 JRNL REMARK REVDAT 1 27-OCT-10 2XQS 0 JRNL AUTH D.POGORYELOV,A.KRAH,J.LANGER,O.YILDIZ,J.D.FARALDO-GOMEZ, JRNL AUTH 2 T.MEIER JRNL TITL MICROSCOPIC ROTARY MECHANISM OF ION TRANSLOCATION IN THE FO JRNL TITL 2 COMPLEX OF ATP SYNTHASES JRNL REF NAT.CHEM.BIOL. V. 6 891 2010 JRNL REFN ISSN 1552-4450 JRNL PMID 20972431 JRNL DOI 10.1038/NCHEMBIO.457 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.73 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 13929 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 696 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.7376 - 5.1282 0.98 2822 148 0.2467 0.2709 REMARK 3 2 5.1282 - 4.0712 1.00 2661 140 0.1448 0.1897 REMARK 3 3 4.0712 - 3.5568 1.00 2616 138 0.1566 0.2249 REMARK 3 4 3.5568 - 3.2317 1.00 2585 136 0.1889 0.2828 REMARK 3 5 3.2317 - 3.0001 0.99 2549 134 0.2440 0.3191 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.35 REMARK 3 B_SOL : 61.31 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.380 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.770 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 57.08 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 10.44780 REMARK 3 B22 (A**2) : 10.44780 REMARK 3 B33 (A**2) : -20.89570 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3303 REMARK 3 ANGLE : 1.087 4416 REMARK 3 CHIRALITY : 0.061 556 REMARK 3 PLANARITY : 0.003 511 REMARK 3 DIHEDRAL : 19.397 1302 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -45.0872 7.0970 30.2318 REMARK 3 T TENSOR REMARK 3 T11: 0.1522 T22: 0.0132 REMARK 3 T33: 0.0769 T12: -0.0043 REMARK 3 T13: 0.0137 T23: -0.0291 REMARK 3 L TENSOR REMARK 3 L11: 0.1831 L22: 0.2751 REMARK 3 L33: 0.0946 L12: -0.0678 REMARK 3 L13: -0.0077 L23: -0.0187 REMARK 3 S TENSOR REMARK 3 S11: -0.0393 S12: -0.0549 S13: -0.0690 REMARK 3 S21: -0.0769 S22: -0.0124 S23: 0.0068 REMARK 3 S31: 0.1740 S32: 0.0522 S33: -0.0292 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2XQS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-SEP-10. REMARK 100 THE DEPOSITION ID IS D_1290045316. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-FEB-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 10.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.873 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13974 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.800 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.30000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 1.22000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2WIE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 10.2 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 129.27000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 129.27000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 129.27000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 129.27000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 129.27000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 129.27000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTADECAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: PENTADECAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 64140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 36850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -584.3 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -46.46500 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 80.47974 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -92.93000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 78 39.74 -141.11 REMARK 500 SER B 3 77.25 -158.35 REMARK 500 ALA B 59 -70.13 -59.73 REMARK 500 LEU E 75 -17.89 -48.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 CVM A 103 REMARK 610 CVM A 104 REMARK 610 CVM A 106 REMARK 610 CVM A 107 REMARK 610 CVM A 108 REMARK 610 CVM A 109 REMARK 610 CVM A 110 REMARK 610 CVM B 103 REMARK 610 CVM B 104 REMARK 610 CVM B 106 REMARK 610 CVM B 107 REMARK 610 CVM B 108 REMARK 610 CVM B 109 REMARK 610 CVM B 110 REMARK 610 CVM C 103 REMARK 610 CVM C 104 REMARK 610 CVM C 106 REMARK 610 CVM C 107 REMARK 610 CVM C 108 REMARK 610 CVM C 109 REMARK 610 CVM C 110 REMARK 610 CVM D 103 REMARK 610 CVM D 104 REMARK 610 CVM D 106 REMARK 610 CVM D 107 REMARK 610 CVM D 108 REMARK 610 CVM D 109 REMARK 610 CVM D 110 REMARK 610 CVM E 103 REMARK 610 CVM E 104 REMARK 610 CVM E 106 REMARK 610 CVM E 107 REMARK 610 CVM E 108 REMARK 610 CVM E 109 REMARK 610 CVM E 110 REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 CVM A 102 REMARK 615 CVM B 102 REMARK 615 CVM C 102 REMARK 615 CVM D 102 REMARK 615 CVM E 102 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CVM A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CVM A 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CVM A 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CVM A 106 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CVM A 107 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CVM A 108 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CVM A 109 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CVM A 110 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CVM B 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CVM B 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CVM B 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CVM B 107 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CVM B 108 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CVM B 110 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CVM C 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CVM C 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CVM C 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CVM C 106 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CVM C 108 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CVM C 109 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CVM D 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CVM D 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CVM D 106 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CVM D 107 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CVM D 108 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CVM D 109 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CVM D 110 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CVM E 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CVM E 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CVM E 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CVM E 107 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2XQU RELATED DB: PDB REMARK 900 MICROSCOPIC ROTARY MECHANISM OF ION TRANSLOCATION IN THE FO COMPLEX REMARK 900 OF ATP SYNTHASES REMARK 900 RELATED ID: 2XQT RELATED DB: PDB REMARK 900 MICROSCOPIC ROTARY MECHANISM OF ION TRANSLOCATION IN THE FO COMPLEX REMARK 900 OF ATP SYNTHASES DBREF 2XQS A 1 82 UNP D5A0Q7 D5A0Q7_SPIPL 1 82 DBREF 2XQS B 1 82 UNP D5A0Q7 D5A0Q7_SPIPL 1 82 DBREF 2XQS C 1 82 UNP D5A0Q7 D5A0Q7_SPIPL 1 82 DBREF 2XQS D 1 82 UNP D5A0Q7 D5A0Q7_SPIPL 1 82 DBREF 2XQS E 1 82 UNP D5A0Q7 D5A0Q7_SPIPL 1 82 SEQRES 1 A 82 FME GLU SER ASN LEU THR THR ALA ALA SER VAL ILE ALA SEQRES 2 A 82 ALA ALA LEU ALA VAL GLY ILE GLY SER ILE GLY PRO GLY SEQRES 3 A 82 LEU GLY GLN GLY GLN ALA ALA GLY GLN ALA VAL GLU GLY SEQRES 4 A 82 ILE ALA ARG GLN PRO GLU ALA GLU GLY LYS ILE ARG GLY SEQRES 5 A 82 THR LEU LEU LEU SER LEU ALA PHE MET GLU ALA LEU THR SEQRES 6 A 82 ILE TYR GLY LEU VAL VAL ALA LEU VAL LEU LEU PHE ALA SEQRES 7 A 82 ASN PRO PHE VAL SEQRES 1 B 82 FME GLU SER ASN LEU THR THR ALA ALA SER VAL ILE ALA SEQRES 2 B 82 ALA ALA LEU ALA VAL GLY ILE GLY SER ILE GLY PRO GLY SEQRES 3 B 82 LEU GLY GLN GLY GLN ALA ALA GLY GLN ALA VAL GLU GLY SEQRES 4 B 82 ILE ALA ARG GLN PRO GLU ALA GLU GLY LYS ILE ARG GLY SEQRES 5 B 82 THR LEU LEU LEU SER LEU ALA PHE MET GLU ALA LEU THR SEQRES 6 B 82 ILE TYR GLY LEU VAL VAL ALA LEU VAL LEU LEU PHE ALA SEQRES 7 B 82 ASN PRO PHE VAL SEQRES 1 C 82 FME GLU SER ASN LEU THR THR ALA ALA SER VAL ILE ALA SEQRES 2 C 82 ALA ALA LEU ALA VAL GLY ILE GLY SER ILE GLY PRO GLY SEQRES 3 C 82 LEU GLY GLN GLY GLN ALA ALA GLY GLN ALA VAL GLU GLY SEQRES 4 C 82 ILE ALA ARG GLN PRO GLU ALA GLU GLY LYS ILE ARG GLY SEQRES 5 C 82 THR LEU LEU LEU SER LEU ALA PHE MET GLU ALA LEU THR SEQRES 6 C 82 ILE TYR GLY LEU VAL VAL ALA LEU VAL LEU LEU PHE ALA SEQRES 7 C 82 ASN PRO PHE VAL SEQRES 1 D 82 FME GLU SER ASN LEU THR THR ALA ALA SER VAL ILE ALA SEQRES 2 D 82 ALA ALA LEU ALA VAL GLY ILE GLY SER ILE GLY PRO GLY SEQRES 3 D 82 LEU GLY GLN GLY GLN ALA ALA GLY GLN ALA VAL GLU GLY SEQRES 4 D 82 ILE ALA ARG GLN PRO GLU ALA GLU GLY LYS ILE ARG GLY SEQRES 5 D 82 THR LEU LEU LEU SER LEU ALA PHE MET GLU ALA LEU THR SEQRES 6 D 82 ILE TYR GLY LEU VAL VAL ALA LEU VAL LEU LEU PHE ALA SEQRES 7 D 82 ASN PRO PHE VAL SEQRES 1 E 82 FME GLU SER ASN LEU THR THR ALA ALA SER VAL ILE ALA SEQRES 2 E 82 ALA ALA LEU ALA VAL GLY ILE GLY SER ILE GLY PRO GLY SEQRES 3 E 82 LEU GLY GLN GLY GLN ALA ALA GLY GLN ALA VAL GLU GLY SEQRES 4 E 82 ILE ALA ARG GLN PRO GLU ALA GLU GLY LYS ILE ARG GLY SEQRES 5 E 82 THR LEU LEU LEU SER LEU ALA PHE MET GLU ALA LEU THR SEQRES 6 E 82 ILE TYR GLY LEU VAL VAL ALA LEU VAL LEU LEU PHE ALA SEQRES 7 E 82 ASN PRO PHE VAL MODRES 2XQS FME A 1 MET N-FORMYLMETHIONINE MODRES 2XQS FME B 1 MET N-FORMYLMETHIONINE MODRES 2XQS FME C 1 MET N-FORMYLMETHIONINE MODRES 2XQS FME D 1 MET N-FORMYLMETHIONINE MODRES 2XQS FME E 1 MET N-FORMYLMETHIONINE HET FME A 1 10 HET FME B 1 10 HET FME C 1 10 HET FME D 1 10 HET FME E 1 10 HET CVM A 102 33 HET CVM A 103 6 HET CVM A 104 6 HET CVM A 106 6 HET CVM A 107 6 HET CVM A 108 6 HET CVM A 109 6 HET CVM A 110 6 HET CVM B 102 33 HET CVM B 103 6 HET CVM B 104 6 HET CVM B 106 6 HET CVM B 107 6 HET CVM B 108 6 HET CVM B 109 6 HET CVM B 110 6 HET CVM C 102 33 HET CVM C 103 6 HET CVM C 104 6 HET CVM C 106 6 HET CVM C 107 6 HET CVM C 108 6 HET CVM C 109 6 HET CVM C 110 6 HET CVM D 102 33 HET CVM D 103 6 HET CVM D 104 6 HET CVM D 106 6 HET CVM D 107 6 HET CVM D 108 6 HET CVM D 109 6 HET CVM D 110 6 HET CVM E 102 33 HET CVM E 103 6 HET CVM E 104 6 HET CVM E 106 6 HET CVM E 107 6 HET CVM E 108 6 HET CVM E 109 6 HET CVM E 110 6 HETNAM FME N-FORMYLMETHIONINE HETNAM CVM CYMAL-4 HETSYN CVM 4-CYCLOHEXYLBUTYL 4-O-ALPHA-D-GLUCOPYRANOSYL-BETA-D- HETSYN 2 CVM GLUCOPYRANOSIDE FORMUL 1 FME 5(C6 H11 N O3 S) FORMUL 6 CVM 40(C22 H40 O11) FORMUL 46 HOH *5(H2 O) HELIX 1 1 ASN A 4 GLY A 21 1 18 HELIX 2 2 SER A 22 GLN A 43 1 22 HELIX 3 3 ALA A 46 ALA A 78 1 33 HELIX 4 4 ASN B 4 ILE B 20 1 17 HELIX 5 5 SER B 22 GLN B 43 1 22 HELIX 6 6 ALA B 46 ALA B 78 1 33 HELIX 7 7 ASN C 4 GLY C 21 1 18 HELIX 8 8 SER C 22 GLN C 43 1 22 HELIX 9 9 ALA C 46 ALA C 78 1 33 HELIX 10 10 ASN D 4 GLY D 21 1 18 HELIX 11 11 SER D 22 GLN D 43 1 22 HELIX 12 12 ALA D 46 ALA D 78 1 33 HELIX 13 13 ASN E 4 ILE E 20 1 17 HELIX 14 14 SER E 22 GLN E 43 1 22 HELIX 15 15 ALA E 46 ALA E 78 1 33 LINK C FME A 1 N GLU A 2 1555 1555 1.34 LINK C FME B 1 N GLU B 2 1555 1555 1.33 LINK C FME C 1 N GLU C 2 1555 1555 1.33 LINK C FME D 1 N GLU D 2 1555 1555 1.33 LINK C FME E 1 N GLU E 2 1555 1555 1.33 SITE 1 AC1 2 CVM B 102 CVM E 102 SITE 1 AC2 1 ALA A 63 SITE 1 AC3 1 CVM E 107 SITE 1 AC4 2 GLU A 62 CVM B 103 SITE 1 AC5 1 TYR B 67 SITE 1 AC6 1 VAL A 70 SITE 1 AC7 1 LEU A 73 SITE 1 AC8 1 CVM B 104 SITE 1 AC9 3 CVM A 102 ASN B 4 CVM C 102 SITE 1 BC1 3 GLU A 62 CVM A 106 ALA B 63 SITE 1 BC2 2 CVM A 110 ILE B 66 SITE 1 BC3 2 ILE B 66 CVM B 108 SITE 1 BC4 2 VAL B 70 CVM B 107 SITE 1 BC5 1 CVM C 104 SITE 1 BC6 4 CVM B 102 ASN C 4 LEU C 5 CVM D 102 SITE 1 BC7 2 GLU B 62 ALA C 63 SITE 1 BC8 2 CVM B 110 ILE C 66 SITE 1 BC9 1 ILE C 66 SITE 1 CC1 1 LEU C 73 SITE 1 CC2 1 LEU C 73 SITE 1 CC3 3 CVM C 102 ASN D 4 CVM E 102 SITE 1 CC4 2 ILE D 66 TYR D 67 SITE 1 CC5 1 ILE D 66 SITE 1 CC6 3 ILE D 66 CVM D 110 TYR E 67 SITE 1 CC7 1 VAL D 70 SITE 1 CC8 1 LEU D 73 SITE 1 CC9 1 CVM D 107 SITE 1 DC1 3 CVM A 102 CVM D 102 LEU E 5 SITE 1 DC2 1 ALA E 63 SITE 1 DC3 1 ILE E 66 SITE 1 DC4 2 CVM A 104 ILE E 66 CRYST1 92.930 92.930 258.540 90.00 90.00 120.00 P 63 2 2 60 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010761 0.006213 0.000000 0.00000 SCALE2 0.000000 0.012425 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003868 0.00000 HETATM 1 N FME A 1 -61.323 -0.066 1.950 1.00 98.72 N ANISOU 1 N FME A 1 14188 11149 12170 -405 -383 -654 N HETATM 2 CN FME A 1 -62.175 -0.156 3.027 1.00104.83 C ANISOU 2 CN FME A 1 14907 11936 12989 -430 -392 -646 C HETATM 3 O1 FME A 1 -63.384 -0.087 2.856 1.00107.62 O ANISOU 3 O1 FME A 1 15247 12281 13362 -458 -434 -655 O HETATM 4 CA FME A 1 -60.134 0.668 2.354 1.00 96.98 C ANISOU 4 CA FME A 1 13942 10969 11937 -378 -343 -633 C HETATM 5 CB FME A 1 -58.857 -0.066 1.948 1.00 98.65 C ANISOU 5 CB FME A 1 14213 11153 12115 -344 -302 -638 C HETATM 6 CG FME A 1 -58.850 -1.513 2.442 1.00102.29 C ANISOU 6 CG FME A 1 14702 11573 12590 -344 -283 -646 C HETATM 7 SD FME A 1 -58.364 -1.622 4.135 1.00214.79 S ANISOU 7 SD FME A 1 28888 25851 26873 -339 -243 -620 S HETATM 8 CE FME A 1 -59.026 -3.083 4.874 1.00 38.06 C ANISOU 8 CE FME A 1 6515 3424 4522 -357 -241 -628 C HETATM 9 C FME A 1 -60.222 2.013 1.693 1.00100.91 C ANISOU 9 C FME A 1 14422 11498 12419 -379 -366 -628 C HETATM 10 O FME A 1 -59.422 2.353 0.814 1.00103.26 O ANISOU 10 O FME A 1 14759 11795 12681 -356 -354 -632 O