HEADER TRANSFERASE 11-SEP-10 2XR7 TITLE CRYSTAL STRUCTURE OF NICOTIANA TABACUM MALONYLTRANSFERASE (NTMAT1) TITLE 2 COMPLEXED WITH MALONYL-COA COMPND MOL_ID: 1; COMPND 2 MOLECULE: MALONYLTRANSFERASE; COMPND 3 CHAIN: A SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NICOTIANA TABACUM; SOURCE 3 ORGANISM_COMMON: COMMON TOBACCO; SOURCE 4 ORGANISM_TAXID: 4097; SOURCE 5 CELL: BY-2 KEYWDS TRANSFERASE, XENOBIOTICS, NAPHTHOLS EXPDTA X-RAY DIFFRACTION AUTHOR B.A.MANJASETTY,X.H.YU,S.PANJIKAR,G.TAGUCHI,M.R.CHANCE,C.J.LIU REVDAT 6 06-NOV-24 2XR7 1 REMARK LINK REVDAT 5 05-SEP-12 2XR7 1 JRNL REVDAT 4 22-AUG-12 2XR7 1 JRNL REMARK REVDAT 3 29-FEB-12 2XR7 1 REMARK REVDAT 2 16-NOV-11 2XR7 1 REMARK REVDAT 1 21-SEP-11 2XR7 0 JRNL AUTH B.A.MANJASETTY,X.H.YU,S.PANJIKAR,G.TAGUCHI,M.R.CHANCE,C.J.LI JRNL TITL STRUCTURAL BASIS FOR MODIFICATION OF FLAVONOL AND NAPHTHOL JRNL TITL 2 GLUCOCONJUGATES BY NICOTIANA TABACUM MALONYLTRANSFERASE JRNL TITL 3 (NTMAT1). JRNL REF PLANTA V. 236 781 2012 JRNL REFN ISSN 0032-0935 JRNL PMID 22610270 JRNL DOI 10.1007/S00425-012-1660-8 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 12928 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.230 REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.289 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1001 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.18 REMARK 3 REFLECTION IN BIN (WORKING SET) : 880 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.86 REMARK 3 BIN R VALUE (WORKING SET) : 0.3060 REMARK 3 BIN FREE R VALUE SET COUNT : 75 REMARK 3 BIN FREE R VALUE : 0.3390 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3544 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 82.65 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.68000 REMARK 3 B22 (A**2) : 0.68000 REMARK 3 B33 (A**2) : -1.36000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.484 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.377 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 45.734 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.933 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.875 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3670 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4990 ; 1.503 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 451 ; 7.765 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 156 ;35.572 ;23.397 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 592 ;20.305 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;20.852 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 550 ; 0.107 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2774 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2252 ; 0.370 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3639 ; 0.815 ; 2.500 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1418 ; 2.358 ; 5.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1351 ; 3.991 ;10.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 43 REMARK 3 ORIGIN FOR THE GROUP (A): -15.9700 -22.5830 39.8840 REMARK 3 T TENSOR REMARK 3 T11: 0.5354 T22: 0.4642 REMARK 3 T33: 0.4107 T12: 0.0232 REMARK 3 T13: 0.0962 T23: 0.1467 REMARK 3 L TENSOR REMARK 3 L11: 5.3542 L22: 3.0388 REMARK 3 L33: 1.3223 L12: -2.6817 REMARK 3 L13: -1.9537 L23: 1.9573 REMARK 3 S TENSOR REMARK 3 S11: -0.1991 S12: -0.3931 S13: -0.1010 REMARK 3 S21: 0.5548 S22: -0.0535 S23: 0.5392 REMARK 3 S31: 0.2548 S32: -0.1171 S33: 0.2526 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 44 A 79 REMARK 3 ORIGIN FOR THE GROUP (A): -4.1050 -31.4820 40.0450 REMARK 3 T TENSOR REMARK 3 T11: 0.2028 T22: 0.2854 REMARK 3 T33: 0.3799 T12: 0.0054 REMARK 3 T13: -0.0483 T23: 0.1626 REMARK 3 L TENSOR REMARK 3 L11: 5.2060 L22: 5.5360 REMARK 3 L33: 6.0031 L12: -1.3056 REMARK 3 L13: -2.0253 L23: 2.6223 REMARK 3 S TENSOR REMARK 3 S11: -0.1844 S12: -0.7377 S13: -0.5624 REMARK 3 S21: 0.3906 S22: 0.5390 S23: -0.0848 REMARK 3 S31: 0.1925 S32: 0.6465 S33: -0.3546 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 80 A 134 REMARK 3 ORIGIN FOR THE GROUP (A): -17.3140 -29.2800 33.4140 REMARK 3 T TENSOR REMARK 3 T11: 0.5707 T22: 0.3777 REMARK 3 T33: 0.4544 T12: -0.1339 REMARK 3 T13: 0.1461 T23: 0.1096 REMARK 3 L TENSOR REMARK 3 L11: 3.5195 L22: 5.8312 REMARK 3 L33: 1.6870 L12: 1.7643 REMARK 3 L13: 1.1039 L23: -1.7336 REMARK 3 S TENSOR REMARK 3 S11: 0.0224 S12: -0.2882 S13: -0.3401 REMARK 3 S21: 0.0907 S22: 0.2185 S23: 0.4155 REMARK 3 S31: 0.3676 S32: -0.3994 S33: -0.2409 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 135 A 187 REMARK 3 ORIGIN FOR THE GROUP (A): -10.3630 -25.8670 36.8000 REMARK 3 T TENSOR REMARK 3 T11: 0.2120 T22: 0.3607 REMARK 3 T33: 0.1955 T12: -0.0159 REMARK 3 T13: -0.0360 T23: 0.1425 REMARK 3 L TENSOR REMARK 3 L11: 5.4107 L22: 4.0054 REMARK 3 L33: 3.8441 L12: -0.5545 REMARK 3 L13: -1.4038 L23: 0.6545 REMARK 3 S TENSOR REMARK 3 S11: 0.1979 S12: -0.3701 S13: 0.2693 REMARK 3 S21: 0.3825 S22: 0.0607 S23: 0.0837 REMARK 3 S31: 0.0193 S32: -0.0364 S33: -0.2586 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 188 A 247 REMARK 3 ORIGIN FOR THE GROUP (A): -18.2240 -15.1110 35.7310 REMARK 3 T TENSOR REMARK 3 T11: 0.5390 T22: 0.5908 REMARK 3 T33: 0.5752 T12: -0.0086 REMARK 3 T13: 0.0142 T23: 0.0629 REMARK 3 L TENSOR REMARK 3 L11: 0.8920 L22: 1.0498 REMARK 3 L33: 4.1934 L12: -0.3457 REMARK 3 L13: -1.5649 L23: 0.5998 REMARK 3 S TENSOR REMARK 3 S11: 0.0657 S12: -0.0930 S13: 0.2364 REMARK 3 S21: 0.4263 S22: 0.0180 S23: 0.2540 REMARK 3 S31: -0.0305 S32: -0.4177 S33: -0.0838 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 248 A 283 REMARK 3 ORIGIN FOR THE GROUP (A): -10.0900 -3.1070 10.7910 REMARK 3 T TENSOR REMARK 3 T11: 0.1943 T22: 0.3442 REMARK 3 T33: 0.2410 T12: -0.1383 REMARK 3 T13: -0.0947 T23: 0.0900 REMARK 3 L TENSOR REMARK 3 L11: 13.0454 L22: 11.8509 REMARK 3 L33: 9.9381 L12: 7.2810 REMARK 3 L13: 0.6009 L23: -1.5144 REMARK 3 S TENSOR REMARK 3 S11: -0.2920 S12: -0.2106 S13: 0.5798 REMARK 3 S21: -0.3537 S22: 0.5028 S23: 0.1921 REMARK 3 S31: -0.8764 S32: 0.2293 S33: -0.2109 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 284 A 341 REMARK 3 ORIGIN FOR THE GROUP (A): -20.4120 -6.2170 20.0360 REMARK 3 T TENSOR REMARK 3 T11: 0.3100 T22: 0.4024 REMARK 3 T33: 0.6093 T12: -0.1009 REMARK 3 T13: 0.0270 T23: 0.1209 REMARK 3 L TENSOR REMARK 3 L11: 2.9483 L22: 3.0327 REMARK 3 L33: 8.6930 L12: -0.4481 REMARK 3 L13: 1.5394 L23: -2.0641 REMARK 3 S TENSOR REMARK 3 S11: -0.2743 S12: 0.1155 S13: 0.5733 REMARK 3 S21: 0.1538 S22: 0.1384 S23: 0.6441 REMARK 3 S31: -0.8019 S32: -0.6021 S33: 0.1359 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 342 A 370 REMARK 3 ORIGIN FOR THE GROUP (A): -20.7700 2.2000 26.0370 REMARK 3 T TENSOR REMARK 3 T11: 0.9722 T22: 0.5594 REMARK 3 T33: 1.8696 T12: 0.1444 REMARK 3 T13: 0.1376 T23: -0.0615 REMARK 3 L TENSOR REMARK 3 L11: 0.6249 L22: 0.4442 REMARK 3 L33: 21.7546 L12: 0.4522 REMARK 3 L13: 0.9810 L23: 1.6199 REMARK 3 S TENSOR REMARK 3 S11: -0.0860 S12: -0.2140 S13: 1.0068 REMARK 3 S21: 0.0280 S22: -0.0866 S23: 0.7194 REMARK 3 S31: -2.8882 S32: -0.4993 S33: 0.1726 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 371 A 420 REMARK 3 ORIGIN FOR THE GROUP (A): -13.3050 -17.8410 23.6670 REMARK 3 T TENSOR REMARK 3 T11: 0.4304 T22: 0.5002 REMARK 3 T33: 0.4549 T12: -0.1090 REMARK 3 T13: 0.0155 T23: 0.0106 REMARK 3 L TENSOR REMARK 3 L11: 12.2176 L22: 7.7743 REMARK 3 L33: 5.0951 L12: -6.9958 REMARK 3 L13: 6.6449 L23: -5.9368 REMARK 3 S TENSOR REMARK 3 S11: -0.5095 S12: -0.5163 S13: 0.7290 REMARK 3 S21: 0.1228 S22: 0.3199 S23: 0.0833 REMARK 3 S31: -0.1556 S32: -0.5115 S33: 0.1897 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 421 A 453 REMARK 3 ORIGIN FOR THE GROUP (A): -9.9320 -17.7670 9.6620 REMARK 3 T TENSOR REMARK 3 T11: 0.3788 T22: 0.5979 REMARK 3 T33: 0.3948 T12: -0.0119 REMARK 3 T13: -0.0578 T23: 0.1192 REMARK 3 L TENSOR REMARK 3 L11: 2.4326 L22: 3.3919 REMARK 3 L33: 14.4808 L12: 1.6845 REMARK 3 L13: -4.1440 L23: 1.1676 REMARK 3 S TENSOR REMARK 3 S11: -0.4357 S12: 0.2847 S13: -0.1218 REMARK 3 S21: -0.3776 S22: 0.7691 S23: -0.2641 REMARK 3 S31: 0.5201 S32: 0.6592 S33: -0.3335 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B REMARK 3 FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U REMARK 3 FACTORS. REMARK 4 REMARK 4 2XR7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-SEP-10. REMARK 100 THE DEPOSITION ID IS D_1290045362. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL; 25-OCT-05 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : NSLS; NSLS REMARK 200 BEAMLINE : X29A; X3A REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793; 0.9793 REMARK 200 MONOCHROMATOR : NULL; SI(111) MIRRORS REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315; SX-165 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25628 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.60000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTO-RICKSHAW REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.3M AMMONIUM ACETATE, 7% PEG 8K, 10% REMARK 280 MPD, PH 5.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 49.03950 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 49.03950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 75.92000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 49.03950 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 49.03950 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 75.92000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 49.03950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 49.03950 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 75.92000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 49.03950 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 49.03950 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 75.92000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 6 CD OE1 OE2 REMARK 470 GLN A 7 CD OE1 NE2 REMARK 470 GLN A 9 CG CD OE1 NE2 REMARK 470 LYS A 69 CG CD CE NZ REMARK 470 SER A 215 OG REMARK 470 ILE A 216 CG1 CG2 CD1 REMARK 470 LYS A 283 CG CD CE NZ REMARK 470 GLU A 370 CB CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR A 268 O21 MLC A 1001 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 5 124.44 -176.07 REMARK 500 PRO A 14 -53.58 -25.79 REMARK 500 HIS A 35 -178.05 -60.15 REMARK 500 PRO A 46 46.73 -80.64 REMARK 500 ASP A 62 -70.33 -63.64 REMARK 500 ASN A 77 5.79 -150.14 REMARK 500 VAL A 78 103.46 36.04 REMARK 500 TRP A 84 43.58 -76.70 REMARK 500 TYR A 87 94.99 49.83 REMARK 500 ASN A 119 105.36 -53.03 REMARK 500 LEU A 130 106.29 80.12 REMARK 500 ALA A 131 157.14 -49.13 REMARK 500 PRO A 153 108.29 -35.25 REMARK 500 ASN A 154 -6.15 90.01 REMARK 500 ASP A 169 -34.33 -153.51 REMARK 500 ARG A 203 -143.57 -73.74 REMARK 500 SER A 204 -28.49 61.96 REMARK 500 TRP A 217 -56.59 -141.98 REMARK 500 ASN A 218 38.93 -67.81 REMARK 500 GLU A 219 -39.32 -151.87 REMARK 500 LYS A 221 -8.11 -54.60 REMARK 500 LYS A 238 -160.84 -129.04 REMARK 500 VAL A 239 -17.23 -140.40 REMARK 500 ARG A 240 104.95 54.60 REMARK 500 LEU A 264 107.13 84.70 REMARK 500 ASP A 293 93.15 -66.56 REMARK 500 PHE A 310 -88.74 -28.80 REMARK 500 ASN A 311 -108.65 4.70 REMARK 500 PRO A 316 12.36 -66.48 REMARK 500 ALA A 322 44.51 -142.33 REMARK 500 LYS A 338 -48.68 60.72 REMARK 500 LYS A 354 -74.33 -77.94 REMARK 500 MSE A 356 -99.81 -100.95 REMARK 500 LYS A 357 9.31 -63.19 REMARK 500 SER A 366 2.69 -65.37 REMARK 500 TRP A 367 26.33 -56.58 REMARK 500 TYR A 371 64.62 -107.30 REMARK 500 ALA A 383 -87.05 -89.25 REMARK 500 ASP A 411 141.24 -39.60 REMARK 500 ILE A 414 110.65 43.68 REMARK 500 ASP A 423 -77.97 -117.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN A 311 PRO A 312 135.43 REMARK 500 LYS A 422 ASP A 423 -143.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 MALONYL-COA (MLC): PART OF THE LIGAND IS DISORDERED REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 MLC A 1001 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MLC A 1001 DBREF 2XR7 A 1 453 UNP Q589Y0 Q589Y0_TOBAC 1 453 SEQRES 1 A 453 MSE ALA SER VAL ILE GLU GLN CYS GLN VAL VAL PRO SER SEQRES 2 A 453 PRO GLY SER ALA THR GLU LEU THR LEU PRO LEU THR TYR SEQRES 3 A 453 PHE ASP HIS VAL TRP LEU ALA PHE HIS ARG MSE ARG ARG SEQRES 4 A 453 ILE LEU PHE TYR LYS LEU PRO ILE SER ARG PRO ASP PHE SEQRES 5 A 453 VAL GLN THR ILE ILE PRO THR LEU LYS ASP SER LEU SER SEQRES 6 A 453 LEU THR LEU LYS TYR TYR LEU PRO LEU ALA GLY ASN VAL SEQRES 7 A 453 ALA CYS PRO GLN ASP TRP SER GLY TYR PRO GLU LEU ARG SEQRES 8 A 453 TYR VAL THR GLY ASN SER VAL SER VAL ILE PHE SER GLU SEQRES 9 A 453 SER ASP MSE ASP PHE ASN TYR LEU ILE GLY TYR HIS PRO SEQRES 10 A 453 ARG ASN THR LYS ASP PHE TYR HIS PHE VAL PRO GLN LEU SEQRES 11 A 453 ALA GLU PRO LYS ASP ALA PRO GLY VAL GLN LEU ALA PRO SEQRES 12 A 453 VAL LEU ALA ILE GLN VAL THR LEU PHE PRO ASN HIS GLY SEQRES 13 A 453 ILE SER ILE GLY PHE THR ASN HIS HIS VAL ALA GLY ASP SEQRES 14 A 453 GLY ALA THR ILE VAL LYS PHE VAL ARG ALA TRP ALA LEU SEQRES 15 A 453 LEU ASN LYS PHE GLY GLY ASP GLU GLN PHE LEU ALA ASN SEQRES 16 A 453 GLU PHE ILE PRO PHE TYR ASP ARG SER VAL ILE LYS ASP SEQRES 17 A 453 PRO ASN GLY VAL GLY MSE SER ILE TRP ASN GLU MSE LYS SEQRES 18 A 453 LYS TYR LYS HIS MSE MSE LYS MSE SER ASP VAL VAL THR SEQRES 19 A 453 PRO PRO ASP LYS VAL ARG GLY THR PHE ILE ILE THR ARG SEQRES 20 A 453 HIS ASP ILE GLY LYS LEU LYS ASN LEU VAL LEU THR ARG SEQRES 21 A 453 ARG PRO LYS LEU THR HIS VAL THR SER PHE THR VAL THR SEQRES 22 A 453 CYS ALA TYR VAL TRP THR CYS ILE ILE LYS SER GLU ALA SEQRES 23 A 453 ALA THR GLY GLU GLU ILE ASP GLU ASN GLY MSE GLU PHE SEQRES 24 A 453 PHE GLY CYS ALA ALA ASP CYS ARG ALA GLN PHE ASN PRO SEQRES 25 A 453 PRO LEU PRO PRO SER TYR PHE GLY ASN ALA LEU VAL GLY SEQRES 26 A 453 TYR VAL ALA ARG THR ARG GLN VAL ASP LEU ALA GLY LYS SEQRES 27 A 453 GLU GLY PHE THR ILE ALA VAL GLU LEU ILE GLY GLU ALA SEQRES 28 A 453 ILE ARG LYS ARG MSE LYS ASP GLU GLU TRP ILE LEU SER SEQRES 29 A 453 GLY SER TRP PHE LYS GLU TYR ASP LYS VAL ASP ALA LYS SEQRES 30 A 453 ARG SER LEU SER VAL ALA GLY SER PRO LYS LEU ASP LEU SEQRES 31 A 453 TYR ALA ALA ASP PHE GLY TRP GLY ARG PRO GLU LYS LEU SEQRES 32 A 453 GLU PHE VAL SER ILE ASP ASN ASP ASP GLY ILE SER MSE SEQRES 33 A 453 SER LEU SER LYS SER LYS ASP SER ASP GLY ASP LEU GLU SEQRES 34 A 453 ILE GLY LEU SER LEU SER LYS THR ARG MSE ASN ALA PHE SEQRES 35 A 453 ALA ALA MSE PHE THR HIS GLY ILE SER PHE LEU MODRES 2XR7 MSE A 37 MET SELENOMETHIONINE MODRES 2XR7 MSE A 107 MET SELENOMETHIONINE MODRES 2XR7 MSE A 214 MET SELENOMETHIONINE MODRES 2XR7 MSE A 220 MET SELENOMETHIONINE MODRES 2XR7 MSE A 226 MET SELENOMETHIONINE MODRES 2XR7 MSE A 227 MET SELENOMETHIONINE MODRES 2XR7 MSE A 229 MET SELENOMETHIONINE MODRES 2XR7 MSE A 297 MET SELENOMETHIONINE MODRES 2XR7 MSE A 356 MET SELENOMETHIONINE MODRES 2XR7 MSE A 416 MET SELENOMETHIONINE MODRES 2XR7 MSE A 439 MET SELENOMETHIONINE MODRES 2XR7 MSE A 445 MET SELENOMETHIONINE HET MSE A 37 8 HET MSE A 107 8 HET MSE A 214 8 HET MSE A 220 8 HET MSE A 226 8 HET MSE A 227 8 HET MSE A 229 8 HET MSE A 297 8 HET MSE A 356 8 HET MSE A 416 8 HET MSE A 439 8 HET MSE A 445 8 HET MLC A1001 30 HETNAM MSE SELENOMETHIONINE HETNAM MLC MALONYL-COENZYME A FORMUL 1 MSE 12(C5 H11 N O2 SE) FORMUL 2 MLC C24 H38 N7 O19 P3 S HELIX 1 1 THR A 25 VAL A 30 1 6 HELIX 2 2 TRP A 31 PHE A 34 5 4 HELIX 3 3 ARG A 49 THR A 55 1 7 HELIX 4 4 THR A 55 LYS A 69 1 15 HELIX 5 5 TYR A 71 GLY A 76 5 6 HELIX 6 6 ASP A 108 ILE A 113 1 6 HELIX 7 7 ASN A 119 VAL A 127 5 9 HELIX 8 8 GLY A 170 PHE A 186 1 17 HELIX 9 9 ASP A 189 LEU A 193 5 5 HELIX 10 10 ALA A 194 ILE A 198 5 5 HELIX 11 11 GLY A 211 ILE A 216 1 6 HELIX 12 12 GLU A 219 TYR A 223 5 5 HELIX 13 13 THR A 246 ARG A 261 1 16 HELIX 14 14 THR A 268 THR A 288 1 21 HELIX 15 15 GLN A 332 ALA A 336 1 5 HELIX 16 16 GLU A 339 ARG A 353 1 15 HELIX 17 17 ASP A 358 SER A 364 1 7 HELIX 18 18 ASP A 375 LYS A 377 5 3 HELIX 19 19 ASP A 389 ALA A 393 5 5 HELIX 20 20 SER A 407 ASP A 409 5 3 HELIX 21 21 SER A 435 SER A 451 1 17 SHEET 1 AA 6 SER A 3 GLN A 7 0 SHEET 2 AA 6 SER A 99 GLU A 104 -1 O VAL A 100 N GLN A 7 SHEET 3 AA 6 LEU A 145 PHE A 152 1 O LEU A 145 N SER A 99 SHEET 4 AA 6 GLY A 156 ASN A 163 -1 O GLY A 156 N PHE A 152 SHEET 5 AA 6 MSE A 37 LYS A 44 -1 O MSE A 37 N ASN A 163 SHEET 6 AA 6 LYS A 402 PHE A 405 -1 O LYS A 402 N PHE A 42 SHEET 1 AB 2 GLU A 19 PRO A 23 0 SHEET 2 AB 2 GLU A 89 VAL A 93 -1 O LEU A 90 N LEU A 22 SHEET 1 AC 3 ALA A 79 PRO A 81 0 SHEET 2 AC 3 VAL A 139 LEU A 141 -1 O GLN A 140 N CYS A 80 SHEET 3 AC 3 LYS A 134 ALA A 136 -1 O LYS A 134 N LEU A 141 SHEET 1 AD 6 GLY A 241 ILE A 245 0 SHEET 2 AD 6 LEU A 428 LEU A 432 -1 O LEU A 428 N ILE A 245 SHEET 3 AD 6 SER A 415 LYS A 420 -1 O SER A 417 N GLY A 431 SHEET 4 AD 6 SER A 379 VAL A 382 1 O SER A 381 N MSE A 416 SHEET 5 AD 6 MSE A 297 ALA A 303 1 O PHE A 299 N LEU A 380 SHEET 6 AD 6 GLY A 325 ARG A 331 -1 O TYR A 326 N CYS A 302 LINK C ARG A 36 N MSE A 37 1555 1555 1.34 LINK C MSE A 37 N ARG A 38 1555 1555 1.33 LINK C ASP A 106 N MSE A 107 1555 1555 1.33 LINK C MSE A 107 N ASP A 108 1555 1555 1.33 LINK C GLY A 213 N MSE A 214 1555 1555 1.34 LINK C MSE A 214 N SER A 215 1555 1555 1.33 LINK C GLU A 219 N MSE A 220 1555 1555 1.33 LINK C MSE A 220 N LYS A 221 1555 1555 1.33 LINK C HIS A 225 N MSE A 226 1555 1555 1.33 LINK C MSE A 226 N MSE A 227 1555 1555 1.34 LINK C MSE A 227 N LYS A 228 1555 1555 1.33 LINK C LYS A 228 N MSE A 229 1555 1555 1.32 LINK C MSE A 229 N SER A 230 1555 1555 1.33 LINK C GLY A 296 N MSE A 297 1555 1555 1.33 LINK C MSE A 297 N GLU A 298 1555 1555 1.33 LINK C ARG A 355 N MSE A 356 1555 1555 1.34 LINK C MSE A 356 N LYS A 357 1555 1555 1.33 LINK C SER A 415 N MSE A 416 1555 1555 1.33 LINK C MSE A 416 N SER A 417 1555 1555 1.33 LINK C ARG A 438 N MSE A 439 1555 1555 1.33 LINK C MSE A 439 N ASN A 440 1555 1555 1.34 LINK C ALA A 444 N MSE A 445 1555 1555 1.33 LINK C MSE A 445 N PHE A 446 1555 1555 1.33 SITE 1 AC1 7 LYS A 254 HIS A 266 THR A 268 SER A 269 SITE 2 AC1 7 PHE A 270 THR A 271 SER A 385 CRYST1 98.079 98.079 151.840 90.00 90.00 90.00 P 42 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010196 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010196 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006586 0.00000