data_2XRL # _entry.id 2XRL # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2XRL pdb_00002xrl 10.2210/pdb2xrl/pdb PDBE EBI-45124 ? ? WWPDB D_1290045124 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 2XGC unspecified 'CRYSTAL STRUCTURE OF A DESIGNED HETERODIMERIC VARIANT T -A(I)B OF THE TETRACYCLINE REPRESSOR' PDB 2XPW unspecified 'TETR(D) IN COMPLEX WITH OXYTETRACYCLINE AND MAGNESIUM.' PDB 1BJZ unspecified 'TETRACYCLINE CHELATED MG2+ -ION INITIATES HELIX UNWINDING FOR TET REPRESSOR INDUCTION' PDB 3ZQG unspecified 'STRUCTURE OF TETRACYCLINE REPRESSOR IN COMPLEX WITH ANTIINDUCER PEPTIDE-TAP2' PDB 2X9D unspecified 'TET REPRESSOR (CLASS D) IN COMPLEX WITH ISO-7- CHLORTETRACYCLINE' PDB 3ZQH unspecified 'STRUCTURE OF TETRACYCLINE REPRESSOR IN COMPLEX WITH INDUCER PEPTIDE-TIP3' PDB 2TRT unspecified 'TETRACYCLINE REPRESSOR CLASS D' PDB 2XPV unspecified 'TETR(D) IN COMPLEX WITH MINOCYCLINE AND MG.' PDB 2VKV unspecified 'TETR (BD) VARIANT L17G WITH REVERSE PHENOTYPE' PDB 1ORK unspecified 'TET REPRESSOR, CLASS D IN COMPLEX WITH 9-(N,N- DIMETHYLGLYCYLAMIDO)-6-DEMETHYL-6-DEOXY-TETRACYCLINE' PDB 2XGE unspecified 'CRYSTAL STRUCTURE OF A DESIGNED HETERODIMERIC VARIANT T -A(A)B OF THE TETRACYCLINE REPRESSOR' PDB 2X6O unspecified 'TET REPRESSOR CLASS D IN COMPLEX WITH 7-CHLOR-2- CYANO-ISO-TETRACYCLINE' PDB 1A6I unspecified 'TET REPRESSOR, CLASS D VARIANT' PDB 1QPI unspecified 'CRYSTAL STRUCTURE OF TETRACYCLINE REPRESSOR/OPERATOR COMPLEX' PDB 2VKE unspecified 'TET REPRESSOR CLASS D COMPLEXED WITH COBALT AND TETRACYCLINE' PDB 2XGD unspecified 'CRYSTAL STRUCTURE OF A DESIGNED HOMODIMERIC VARIANT T- A(L)A(L) OF THE TETRACYCLINE REPRESSOR' PDB 1DU7 unspecified 'CRYSTAL STRUCTURE OF TET REPRESSOR CLASS D WITH 4- EPI- TETRACYCLINE' PDB 2XPT unspecified 'TETR(D) IN COMPLEX WITH MINOCYCLINE AND MAGNESIUM.' PDB 2XPU unspecified 'TETR(D) IN COMPLEX WITH ANHYDROTETRACYCLINE.' PDB 2XB5 unspecified 'TET REPRESSOR (CLASS D) IN COMPLEX WITH 7- IODOTETRACYCLINE' PDB 3ZQI unspecified 'STRUCTURE OF TETRACYCLINE REPRESSOR IN COMPLEX WITH INDUCER PEPTIDE-TIP2' PDB 3ZQF unspecified 'STRUCTURE OF TETRACYCLINE REPRESSOR IN COMPLEX WITH ANTIINDUCER PEPTIDE-TAP1' PDB 1BJ0 unspecified 'TETRACYCLINE CHELATED MG2+ -ION INITIATES HELIX UNWINDING FOR TET REPRESSOR INDUCTION' PDB 2XPS unspecified 'TETR(D) IN COMPLEX WITH ANHYDROTETRACYCLINE AND MAGNESIUM' PDB 2TCT unspecified 'MOL_ID: 1; MOLECULE: TETRACYCLINE REPRESSOR; CHAIN: NULL ; SYNONYM: TET REPRESSOR, CLASS D; ENGINEERED: YES' PDB 1BJY unspecified 'TETRACYCLINE CHELATED MG2+ -ION INITIATES HELIX UNWINDING FOR TET REPRESSOR INDUCTION' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2XRL _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2010-09-16 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Palm, G.J.' 1 'Waack, P.' 2 'Hinrichs, W.' 3 # _citation.id primary _citation.title 'Thermodynamics, cooperativity and stability of the tetracycline repressor (TetR) upon tetracycline binding.' _citation.journal_abbrev 'Biochim Biophys Acta Proteins Proteom' _citation.journal_volume 1868 _citation.page_first 140404 _citation.page_last 140404 _citation.year 2020 _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN 1878-1454 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 32114262 _citation.pdbx_database_id_DOI 10.1016/j.bbapap.2020.140404 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Palm, G.J.' 1 ? primary 'Buchholz, I.' 2 ? primary 'Werten, S.' 3 ? primary 'Girbardt, B.' 4 ? primary 'Berndt, L.' 5 ? primary 'Delcea, M.' 6 ? primary 'Hinrichs, W.' 7 ? # _cell.entry_id 2XRL _cell.length_a 67.888 _cell.length_b 67.888 _cell.length_c 180.438 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2XRL _symmetry.space_group_name_H-M 'I 41 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'TETRACYCLINE REPRESSOR PROTEIN CLASS D' 23258.307 1 ? YES 'RESIDUES 2-208' ? 2 non-polymer syn 'CHLORIDE ION' 35.453 2 ? ? ? ? 3 non-polymer syn ;(4S,4AR,5S,5AR,6R,12AS)-4-(DIMETHYLAMINO)-3,5,10,12,12A-PENTAHYDROXY-6-METHYL-1,11-DIOXO-1,4,4A,5,5A,6,11,12A-OCTAHYDROTETRACENE-2-CARBOXAMIDE ; 444.435 1 ? ? ? ? 4 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 5 water nat water 18.015 106 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;SRLNRESVIDAALELLNETGIDGLTTRKLAQKLGIEQPTLYWHVKNKRALLDALAVEILARHHDYSLPAAGESWQSFLRN NAMSFRRALLRYRDGAKVHLGARPDEKQYDTVETQLRFMTENGFSLRDGLYAISAVSHFTLGAVLEQQEHTAALTDRPAA PDENLPPLLREALQIMDSDDGEQAFLHGLESLIRGFEVQLTALLQIV ; _entity_poly.pdbx_seq_one_letter_code_can ;SRLNRESVIDAALELLNETGIDGLTTRKLAQKLGIEQPTLYWHVKNKRALLDALAVEILARHHDYSLPAAGESWQSFLRN NAMSFRRALLRYRDGAKVHLGARPDEKQYDTVETQLRFMTENGFSLRDGLYAISAVSHFTLGAVLEQQEHTAALTDRPAA PDENLPPLLREALQIMDSDDGEQAFLHGLESLIRGFEVQLTALLQIV ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ARG n 1 3 LEU n 1 4 ASN n 1 5 ARG n 1 6 GLU n 1 7 SER n 1 8 VAL n 1 9 ILE n 1 10 ASP n 1 11 ALA n 1 12 ALA n 1 13 LEU n 1 14 GLU n 1 15 LEU n 1 16 LEU n 1 17 ASN n 1 18 GLU n 1 19 THR n 1 20 GLY n 1 21 ILE n 1 22 ASP n 1 23 GLY n 1 24 LEU n 1 25 THR n 1 26 THR n 1 27 ARG n 1 28 LYS n 1 29 LEU n 1 30 ALA n 1 31 GLN n 1 32 LYS n 1 33 LEU n 1 34 GLY n 1 35 ILE n 1 36 GLU n 1 37 GLN n 1 38 PRO n 1 39 THR n 1 40 LEU n 1 41 TYR n 1 42 TRP n 1 43 HIS n 1 44 VAL n 1 45 LYS n 1 46 ASN n 1 47 LYS n 1 48 ARG n 1 49 ALA n 1 50 LEU n 1 51 LEU n 1 52 ASP n 1 53 ALA n 1 54 LEU n 1 55 ALA n 1 56 VAL n 1 57 GLU n 1 58 ILE n 1 59 LEU n 1 60 ALA n 1 61 ARG n 1 62 HIS n 1 63 HIS n 1 64 ASP n 1 65 TYR n 1 66 SER n 1 67 LEU n 1 68 PRO n 1 69 ALA n 1 70 ALA n 1 71 GLY n 1 72 GLU n 1 73 SER n 1 74 TRP n 1 75 GLN n 1 76 SER n 1 77 PHE n 1 78 LEU n 1 79 ARG n 1 80 ASN n 1 81 ASN n 1 82 ALA n 1 83 MET n 1 84 SER n 1 85 PHE n 1 86 ARG n 1 87 ARG n 1 88 ALA n 1 89 LEU n 1 90 LEU n 1 91 ARG n 1 92 TYR n 1 93 ARG n 1 94 ASP n 1 95 GLY n 1 96 ALA n 1 97 LYS n 1 98 VAL n 1 99 HIS n 1 100 LEU n 1 101 GLY n 1 102 ALA n 1 103 ARG n 1 104 PRO n 1 105 ASP n 1 106 GLU n 1 107 LYS n 1 108 GLN n 1 109 TYR n 1 110 ASP n 1 111 THR n 1 112 VAL n 1 113 GLU n 1 114 THR n 1 115 GLN n 1 116 LEU n 1 117 ARG n 1 118 PHE n 1 119 MET n 1 120 THR n 1 121 GLU n 1 122 ASN n 1 123 GLY n 1 124 PHE n 1 125 SER n 1 126 LEU n 1 127 ARG n 1 128 ASP n 1 129 GLY n 1 130 LEU n 1 131 TYR n 1 132 ALA n 1 133 ILE n 1 134 SER n 1 135 ALA n 1 136 VAL n 1 137 SER n 1 138 HIS n 1 139 PHE n 1 140 THR n 1 141 LEU n 1 142 GLY n 1 143 ALA n 1 144 VAL n 1 145 LEU n 1 146 GLU n 1 147 GLN n 1 148 GLN n 1 149 GLU n 1 150 HIS n 1 151 THR n 1 152 ALA n 1 153 ALA n 1 154 LEU n 1 155 THR n 1 156 ASP n 1 157 ARG n 1 158 PRO n 1 159 ALA n 1 160 ALA n 1 161 PRO n 1 162 ASP n 1 163 GLU n 1 164 ASN n 1 165 LEU n 1 166 PRO n 1 167 PRO n 1 168 LEU n 1 169 LEU n 1 170 ARG n 1 171 GLU n 1 172 ALA n 1 173 LEU n 1 174 GLN n 1 175 ILE n 1 176 MET n 1 177 ASP n 1 178 SER n 1 179 ASP n 1 180 ASP n 1 181 GLY n 1 182 GLU n 1 183 GLN n 1 184 ALA n 1 185 PHE n 1 186 LEU n 1 187 HIS n 1 188 GLY n 1 189 LEU n 1 190 GLU n 1 191 SER n 1 192 LEU n 1 193 ILE n 1 194 ARG n 1 195 GLY n 1 196 PHE n 1 197 GLU n 1 198 VAL n 1 199 GLN n 1 200 LEU n 1 201 THR n 1 202 ALA n 1 203 LEU n 1 204 LEU n 1 205 GLN n 1 206 ILE n 1 207 VAL n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 562 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 83333 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain K-12 _entity_src_gen.pdbx_host_org_variant RB791 _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PWH610 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code TETR4_ECOLX _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession P0ACT4 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2XRL _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 207 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P0ACT4 _struct_ref_seq.db_align_beg 3 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 208 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 3 _struct_ref_seq.pdbx_auth_seq_align_end 208 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2XRL SER A 1 ? UNP P0ACT4 ALA 2 'cloning artifact' 2 1 1 2XRL ALA A 102 ? UNP P0ACT4 THR 103 'engineered mutation' 103 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 DXT non-polymer . ;(4S,4AR,5S,5AR,6R,12AS)-4-(DIMETHYLAMINO)-3,5,10,12,12A-PENTAHYDROXY-6-METHYL-1,11-DIOXO-1,4,4A,5,5A,6,11,12A-OCTAHYDROTETRACENE-2-CARBOXAMIDE ; 'DOXYTETRACYCLINE; DOXYCYCLINE' 'C22 H24 N2 O8' 444.435 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2XRL _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.17 _exptl_crystal.density_percent_sol 43.3 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details ;HANGING DROP VAPOR DIFFUSION WITH 2 UL (14 MG/ML PROTEIN) AND 2 UL (0.6 M NACL, 15 % PEG 4000, 0.1 M MES PH 6.5). CRYSTAL WAS CRYOCOOLED WITH PARAFFIN OIL AS CRYOPROTECTANT. ; # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type RIGAKU-MSC _diffrn_detector.pdbx_collection_date 2007-03-29 _diffrn_detector.details MIRRORS # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator MIRRORS _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU MICROMAX-007' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2XRL _reflns.observed_criterion_sigma_I -3.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 33.00 _reflns.d_resolution_high 1.80 _reflns.number_obs 19733 _reflns.number_all ? _reflns.percent_possible_obs 98.4 _reflns.pdbx_Rmerge_I_obs 0.07 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 13.00 _reflns.B_iso_Wilson_estimate 38 _reflns.pdbx_redundancy 9.17 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.80 _reflns_shell.d_res_low 1.86 _reflns_shell.percent_possible_all 88.6 _reflns_shell.Rmerge_I_obs 0.54 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 1.70 _reflns_shell.pdbx_redundancy 3.43 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2XRL _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 17378 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 32.87 _refine.ls_d_res_high 1.85 _refine.ls_percent_reflns_obs 98.75 _refine.ls_R_factor_obs 0.23800 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.23584 _refine.ls_R_factor_R_free 0.27908 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 912 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.946 _refine.correlation_coeff_Fo_to_Fc_free 0.942 _refine.B_iso_mean 45.851 _refine.aniso_B[1][1] 0.87 _refine.aniso_B[2][2] 0.87 _refine.aniso_B[3][3] -1.75 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.' _refine.pdbx_starting_model 'PDB ENTRY 2O7O' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.187 _refine.pdbx_overall_ESU_R_Free 0.169 _refine.overall_SU_ML 0.149 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 11.238 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1639 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 35 _refine_hist.number_atoms_solvent 106 _refine_hist.number_atoms_total 1780 _refine_hist.d_res_high 1.85 _refine_hist.d_res_low 32.87 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.023 0.021 ? 1715 'X-RAY DIFFRACTION' ? r_bond_other_d 0.001 0.020 ? 1157 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.854 1.993 ? 2334 'X-RAY DIFFRACTION' ? r_angle_other_deg 1.156 3.000 ? 2803 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.531 5.000 ? 208 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 39.936 23.529 ? 85 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 14.161 15.000 ? 292 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 23.890 15.000 ? 17 'X-RAY DIFFRACTION' ? r_chiral_restr 0.155 0.200 ? 264 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.009 0.020 ? 1920 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 353 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.076 1.500 ? 1036 'X-RAY DIFFRACTION' ? r_mcbond_other 0.321 1.500 ? 420 'X-RAY DIFFRACTION' ? r_mcangle_it 1.796 2.000 ? 1656 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 2.785 3.000 ? 679 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 4.130 4.500 ? 678 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.850 _refine_ls_shell.d_res_low 1.898 _refine_ls_shell.number_reflns_R_work 1238 _refine_ls_shell.R_factor_R_work 0.321 _refine_ls_shell.percent_reflns_obs 96.79 _refine_ls_shell.R_factor_R_free 0.390 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 57 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 2XRL _struct.title 'Tet-repressor class D T103A with doxycycline' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2XRL _struct_keywords.pdbx_keywords TRANSCRIPTION _struct_keywords.text 'TRANSCRIPTION, ANTIBIOTIC RESISTANCE, DNA-BINDING, HELIX-TURN-HELIX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 5 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 4 ? LEU A 24 ? ASN A 5 LEU A 25 1 ? 21 HELX_P HELX_P2 2 THR A 25 ? GLY A 34 ? THR A 26 GLY A 35 1 ? 10 HELX_P HELX_P3 3 GLU A 36 ? VAL A 44 ? GLU A 37 VAL A 45 1 ? 9 HELX_P HELX_P4 4 ASN A 46 ? HIS A 63 ? ASN A 47 HIS A 64 1 ? 18 HELX_P HELX_P5 5 SER A 73 ? TYR A 92 ? SER A 74 TYR A 93 1 ? 20 HELX_P HELX_P6 6 ASP A 94 ? GLY A 101 ? ASP A 95 GLY A 102 1 ? 8 HELX_P HELX_P7 7 ASP A 105 ? LYS A 107 ? ASP A 106 LYS A 108 5 ? 3 HELX_P HELX_P8 8 GLN A 108 ? GLU A 121 ? GLN A 109 GLU A 122 1 ? 14 HELX_P HELX_P9 9 SER A 125 ? ARG A 157 ? SER A 126 ARG A 158 1 ? 33 HELX_P HELX_P10 10 PRO A 166 ? ASP A 177 ? PRO A 167 ASP A 178 1 ? 12 HELX_P HELX_P11 11 GLY A 181 ? LEU A 203 ? GLY A 182 LEU A 204 1 ? 23 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A HIS 99 NE2 ? ? ? 1_555 E MG . MG ? ? A HIS 100 A MG 1212 1_555 ? ? ? ? ? ? ? 2.281 ? ? metalc2 metalc ? ? D DXT . O11 ? ? ? 1_555 E MG . MG ? ? A DXT 1211 A MG 1212 1_555 ? ? ? ? ? ? ? 2.041 ? ? metalc3 metalc ? ? D DXT . O12 ? ? ? 1_555 E MG . MG ? ? A DXT 1211 A MG 1212 1_555 ? ? ? ? ? ? ? 1.930 ? ? metalc4 metalc ? ? E MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 1212 A HOH 1213 1_555 ? ? ? ? ? ? ? 2.192 ? ? metalc5 metalc ? ? E MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 1212 A HOH 1214 1_555 ? ? ? ? ? ? ? 2.245 ? ? metalc6 metalc ? ? E MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 1212 A HOH 1215 1_555 ? ? ? ? ? ? ? 2.075 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A CL 1209 ? 5 'BINDING SITE FOR RESIDUE CL A 1209' AC2 Software A CL 1210 ? 3 'BINDING SITE FOR RESIDUE CL A 1210' AC3 Software A DXT 1211 ? 16 'BINDING SITE FOR RESIDUE DXT A 1211' AC4 Software A MG 1212 ? 5 'BINDING SITE FOR RESIDUE MG A 1212' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 ARG A 2 ? ARG A 3 . ? 1_555 ? 2 AC1 5 LEU A 3 ? LEU A 4 . ? 1_555 ? 3 AC1 5 GLN A 75 ? GLN A 76 . ? 11_554 ? 4 AC1 5 ARG A 79 ? ARG A 80 . ? 11_554 ? 5 AC1 5 HOH F . ? HOH A 2095 . ? 11_554 ? 6 AC2 3 ARG A 2 ? ARG A 3 . ? 1_555 ? 7 AC2 3 SER A 73 ? SER A 74 . ? 11_554 ? 8 AC2 3 SER A 76 ? SER A 77 . ? 11_554 ? 9 AC3 16 HIS A 63 ? HIS A 64 . ? 1_555 ? 10 AC3 16 SER A 66 ? SER A 67 . ? 1_555 ? 11 AC3 16 ASN A 81 ? ASN A 82 . ? 1_555 ? 12 AC3 16 PHE A 85 ? PHE A 86 . ? 1_555 ? 13 AC3 16 HIS A 99 ? HIS A 100 . ? 1_555 ? 14 AC3 16 ARG A 103 ? ARG A 104 . ? 1_555 ? 15 AC3 16 PRO A 104 ? PRO A 105 . ? 1_555 ? 16 AC3 16 VAL A 112 ? VAL A 113 . ? 1_555 ? 17 AC3 16 GLN A 115 ? GLN A 116 . ? 1_555 ? 18 AC3 16 ILE A 133 ? ILE A 134 . ? 1_555 ? 19 AC3 16 SER A 137 ? SER A 138 . ? 1_555 ? 20 AC3 16 LEU A 173 ? LEU A 174 . ? 10_665 ? 21 AC3 16 MG E . ? MG A 1212 . ? 1_555 ? 22 AC3 16 HOH F . ? HOH A 1214 . ? 1_555 ? 23 AC3 16 HOH F . ? HOH A 1215 . ? 1_555 ? 24 AC3 16 HOH F . ? HOH A 2105 . ? 1_555 ? 25 AC4 5 HIS A 99 ? HIS A 100 . ? 1_555 ? 26 AC4 5 DXT D . ? DXT A 1211 . ? 1_555 ? 27 AC4 5 HOH F . ? HOH A 1213 . ? 1_555 ? 28 AC4 5 HOH F . ? HOH A 1214 . ? 1_555 ? 29 AC4 5 HOH F . ? HOH A 1215 . ? 1_555 ? # _database_PDB_matrix.entry_id 2XRL _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2XRL _atom_sites.fract_transf_matrix[1][1] 0.014730 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014730 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.005542 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL MG N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 2 2 SER SER A . n A 1 2 ARG 2 3 3 ARG ARG A . n A 1 3 LEU 3 4 4 LEU LEU A . n A 1 4 ASN 4 5 5 ASN ASN A . n A 1 5 ARG 5 6 6 ARG ARG A . n A 1 6 GLU 6 7 7 GLU GLU A . n A 1 7 SER 7 8 8 SER SER A . n A 1 8 VAL 8 9 9 VAL VAL A . n A 1 9 ILE 9 10 10 ILE ILE A . n A 1 10 ASP 10 11 11 ASP ASP A . n A 1 11 ALA 11 12 12 ALA ALA A . n A 1 12 ALA 12 13 13 ALA ALA A . n A 1 13 LEU 13 14 14 LEU LEU A . n A 1 14 GLU 14 15 15 GLU GLU A . n A 1 15 LEU 15 16 16 LEU LEU A . n A 1 16 LEU 16 17 17 LEU LEU A . n A 1 17 ASN 17 18 18 ASN ASN A . n A 1 18 GLU 18 19 19 GLU GLU A . n A 1 19 THR 19 20 20 THR THR A . n A 1 20 GLY 20 21 21 GLY GLY A . n A 1 21 ILE 21 22 22 ILE ILE A . n A 1 22 ASP 22 23 23 ASP ASP A . n A 1 23 GLY 23 24 24 GLY GLY A . n A 1 24 LEU 24 25 25 LEU LEU A . n A 1 25 THR 25 26 26 THR THR A . n A 1 26 THR 26 27 27 THR THR A . n A 1 27 ARG 27 28 28 ARG ARG A . n A 1 28 LYS 28 29 29 LYS LYS A . n A 1 29 LEU 29 30 30 LEU LEU A . n A 1 30 ALA 30 31 31 ALA ALA A . n A 1 31 GLN 31 32 32 GLN GLN A . n A 1 32 LYS 32 33 33 LYS LYS A . n A 1 33 LEU 33 34 34 LEU LEU A . n A 1 34 GLY 34 35 35 GLY GLY A . n A 1 35 ILE 35 36 36 ILE ILE A . n A 1 36 GLU 36 37 37 GLU GLU A . n A 1 37 GLN 37 38 38 GLN GLN A . n A 1 38 PRO 38 39 39 PRO PRO A . n A 1 39 THR 39 40 40 THR THR A . n A 1 40 LEU 40 41 41 LEU LEU A . n A 1 41 TYR 41 42 42 TYR TYR A . n A 1 42 TRP 42 43 43 TRP TRP A . n A 1 43 HIS 43 44 44 HIS HIS A . n A 1 44 VAL 44 45 45 VAL VAL A . n A 1 45 LYS 45 46 46 LYS LYS A . n A 1 46 ASN 46 47 47 ASN ASN A . n A 1 47 LYS 47 48 48 LYS LYS A . n A 1 48 ARG 48 49 49 ARG ARG A . n A 1 49 ALA 49 50 50 ALA ALA A . n A 1 50 LEU 50 51 51 LEU LEU A . n A 1 51 LEU 51 52 52 LEU LEU A . n A 1 52 ASP 52 53 53 ASP ASP A . n A 1 53 ALA 53 54 54 ALA ALA A . n A 1 54 LEU 54 55 55 LEU LEU A . n A 1 55 ALA 55 56 56 ALA ALA A . n A 1 56 VAL 56 57 57 VAL VAL A . n A 1 57 GLU 57 58 58 GLU GLU A . n A 1 58 ILE 58 59 59 ILE ILE A . n A 1 59 LEU 59 60 60 LEU LEU A . n A 1 60 ALA 60 61 61 ALA ALA A . n A 1 61 ARG 61 62 62 ARG ARG A . n A 1 62 HIS 62 63 63 HIS HIS A . n A 1 63 HIS 63 64 64 HIS HIS A . n A 1 64 ASP 64 65 65 ASP ASP A . n A 1 65 TYR 65 66 66 TYR TYR A . n A 1 66 SER 66 67 67 SER SER A . n A 1 67 LEU 67 68 68 LEU LEU A . n A 1 68 PRO 68 69 69 PRO PRO A . n A 1 69 ALA 69 70 70 ALA ALA A . n A 1 70 ALA 70 71 71 ALA ALA A . n A 1 71 GLY 71 72 72 GLY GLY A . n A 1 72 GLU 72 73 73 GLU GLU A . n A 1 73 SER 73 74 74 SER SER A . n A 1 74 TRP 74 75 75 TRP TRP A . n A 1 75 GLN 75 76 76 GLN GLN A . n A 1 76 SER 76 77 77 SER SER A . n A 1 77 PHE 77 78 78 PHE PHE A . n A 1 78 LEU 78 79 79 LEU LEU A . n A 1 79 ARG 79 80 80 ARG ARG A . n A 1 80 ASN 80 81 81 ASN ASN A . n A 1 81 ASN 81 82 82 ASN ASN A . n A 1 82 ALA 82 83 83 ALA ALA A . n A 1 83 MET 83 84 84 MET MET A . n A 1 84 SER 84 85 85 SER SER A . n A 1 85 PHE 85 86 86 PHE PHE A . n A 1 86 ARG 86 87 87 ARG ARG A . n A 1 87 ARG 87 88 88 ARG ARG A . n A 1 88 ALA 88 89 89 ALA ALA A . n A 1 89 LEU 89 90 90 LEU LEU A . n A 1 90 LEU 90 91 91 LEU LEU A . n A 1 91 ARG 91 92 92 ARG ARG A . n A 1 92 TYR 92 93 93 TYR TYR A . n A 1 93 ARG 93 94 94 ARG ARG A . n A 1 94 ASP 94 95 95 ASP ASP A . n A 1 95 GLY 95 96 96 GLY GLY A . n A 1 96 ALA 96 97 97 ALA ALA A . n A 1 97 LYS 97 98 98 LYS LYS A . n A 1 98 VAL 98 99 99 VAL VAL A . n A 1 99 HIS 99 100 100 HIS HIS A . n A 1 100 LEU 100 101 101 LEU LEU A . n A 1 101 GLY 101 102 102 GLY GLY A . n A 1 102 ALA 102 103 103 ALA ALA A . n A 1 103 ARG 103 104 104 ARG ARG A . n A 1 104 PRO 104 105 105 PRO PRO A . n A 1 105 ASP 105 106 106 ASP ASP A . n A 1 106 GLU 106 107 107 GLU GLU A . n A 1 107 LYS 107 108 108 LYS LYS A . n A 1 108 GLN 108 109 109 GLN GLN A . n A 1 109 TYR 109 110 110 TYR TYR A . n A 1 110 ASP 110 111 111 ASP ASP A . n A 1 111 THR 111 112 112 THR THR A . n A 1 112 VAL 112 113 113 VAL VAL A . n A 1 113 GLU 113 114 114 GLU GLU A . n A 1 114 THR 114 115 115 THR THR A . n A 1 115 GLN 115 116 116 GLN GLN A . n A 1 116 LEU 116 117 117 LEU LEU A . n A 1 117 ARG 117 118 118 ARG ARG A . n A 1 118 PHE 118 119 119 PHE PHE A . n A 1 119 MET 119 120 120 MET MET A . n A 1 120 THR 120 121 121 THR THR A . n A 1 121 GLU 121 122 122 GLU GLU A . n A 1 122 ASN 122 123 123 ASN ASN A . n A 1 123 GLY 123 124 124 GLY GLY A . n A 1 124 PHE 124 125 125 PHE PHE A . n A 1 125 SER 125 126 126 SER SER A . n A 1 126 LEU 126 127 127 LEU LEU A . n A 1 127 ARG 127 128 128 ARG ARG A . n A 1 128 ASP 128 129 129 ASP ASP A . n A 1 129 GLY 129 130 130 GLY GLY A . n A 1 130 LEU 130 131 131 LEU LEU A . n A 1 131 TYR 131 132 132 TYR TYR A . n A 1 132 ALA 132 133 133 ALA ALA A . n A 1 133 ILE 133 134 134 ILE ILE A . n A 1 134 SER 134 135 135 SER SER A . n A 1 135 ALA 135 136 136 ALA ALA A . n A 1 136 VAL 136 137 137 VAL VAL A . n A 1 137 SER 137 138 138 SER SER A . n A 1 138 HIS 138 139 139 HIS HIS A . n A 1 139 PHE 139 140 140 PHE PHE A . n A 1 140 THR 140 141 141 THR THR A . n A 1 141 LEU 141 142 142 LEU LEU A . n A 1 142 GLY 142 143 143 GLY GLY A . n A 1 143 ALA 143 144 144 ALA ALA A . n A 1 144 VAL 144 145 145 VAL VAL A . n A 1 145 LEU 145 146 146 LEU LEU A . n A 1 146 GLU 146 147 147 GLU GLU A . n A 1 147 GLN 147 148 148 GLN GLN A . n A 1 148 GLN 148 149 149 GLN GLN A . n A 1 149 GLU 149 150 150 GLU GLU A . n A 1 150 HIS 150 151 151 HIS HIS A . n A 1 151 THR 151 152 152 THR THR A . n A 1 152 ALA 152 153 153 ALA ALA A . n A 1 153 ALA 153 154 154 ALA ALA A . n A 1 154 LEU 154 155 155 LEU LEU A . n A 1 155 THR 155 156 156 THR THR A . n A 1 156 ASP 156 157 157 ASP ASP A . n A 1 157 ARG 157 158 158 ARG ARG A . n A 1 158 PRO 158 159 159 PRO PRO A . n A 1 159 ALA 159 160 160 ALA ALA A . n A 1 160 ALA 160 161 161 ALA ALA A . n A 1 161 PRO 161 162 162 PRO PRO A . n A 1 162 ASP 162 163 163 ASP ASP A . n A 1 163 GLU 163 164 164 GLU GLU A . n A 1 164 ASN 164 165 165 ASN ASN A . n A 1 165 LEU 165 166 166 LEU LEU A . n A 1 166 PRO 166 167 167 PRO PRO A . n A 1 167 PRO 167 168 168 PRO PRO A . n A 1 168 LEU 168 169 169 LEU LEU A . n A 1 169 LEU 169 170 170 LEU LEU A . n A 1 170 ARG 170 171 171 ARG ARG A . n A 1 171 GLU 171 172 172 GLU GLU A . n A 1 172 ALA 172 173 173 ALA ALA A . n A 1 173 LEU 173 174 174 LEU LEU A . n A 1 174 GLN 174 175 175 GLN GLN A . n A 1 175 ILE 175 176 176 ILE ILE A . n A 1 176 MET 176 177 177 MET MET A . n A 1 177 ASP 177 178 178 ASP ASP A . n A 1 178 SER 178 179 179 SER SER A . n A 1 179 ASP 179 180 180 ASP ASP A . n A 1 180 ASP 180 181 181 ASP ASP A . n A 1 181 GLY 181 182 182 GLY GLY A . n A 1 182 GLU 182 183 183 GLU GLU A . n A 1 183 GLN 183 184 184 GLN GLN A . n A 1 184 ALA 184 185 185 ALA ALA A . n A 1 185 PHE 185 186 186 PHE PHE A . n A 1 186 LEU 186 187 187 LEU LEU A . n A 1 187 HIS 187 188 188 HIS HIS A . n A 1 188 GLY 188 189 189 GLY GLY A . n A 1 189 LEU 189 190 190 LEU LEU A . n A 1 190 GLU 190 191 191 GLU GLU A . n A 1 191 SER 191 192 192 SER SER A . n A 1 192 LEU 192 193 193 LEU LEU A . n A 1 193 ILE 193 194 194 ILE ILE A . n A 1 194 ARG 194 195 195 ARG ARG A . n A 1 195 GLY 195 196 196 GLY GLY A . n A 1 196 PHE 196 197 197 PHE PHE A . n A 1 197 GLU 197 198 198 GLU GLU A . n A 1 198 VAL 198 199 199 VAL VAL A . n A 1 199 GLN 199 200 200 GLN GLN A . n A 1 200 LEU 200 201 201 LEU LEU A . n A 1 201 THR 201 202 202 THR THR A . n A 1 202 ALA 202 203 203 ALA ALA A . n A 1 203 LEU 203 204 204 LEU LEU A . n A 1 204 LEU 204 205 205 LEU LEU A . n A 1 205 GLN 205 206 206 GLN GLN A . n A 1 206 ILE 206 207 207 ILE ILE A . n A 1 207 VAL 207 208 208 VAL VAL A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL 1 1209 1209 CL CL A . C 2 CL 1 1210 1210 CL CL A . D 3 DXT 1 1211 1211 DXT DXT A . E 4 MG 1 1212 1212 MG MG A . F 5 HOH 1 1213 1213 HOH HOH A . F 5 HOH 2 1214 1214 HOH HOH A . F 5 HOH 3 1215 1215 HOH HOH A . F 5 HOH 4 2001 2001 HOH HOH A . F 5 HOH 5 2002 2002 HOH HOH A . F 5 HOH 6 2003 2003 HOH HOH A . F 5 HOH 7 2004 2004 HOH HOH A . F 5 HOH 8 2005 2005 HOH HOH A . F 5 HOH 9 2006 2006 HOH HOH A . F 5 HOH 10 2007 2007 HOH HOH A . F 5 HOH 11 2008 2008 HOH HOH A . F 5 HOH 12 2009 2009 HOH HOH A . F 5 HOH 13 2010 2010 HOH HOH A . F 5 HOH 14 2011 2011 HOH HOH A . F 5 HOH 15 2012 2012 HOH HOH A . F 5 HOH 16 2013 2013 HOH HOH A . F 5 HOH 17 2014 2014 HOH HOH A . F 5 HOH 18 2015 2015 HOH HOH A . F 5 HOH 19 2016 2016 HOH HOH A . F 5 HOH 20 2017 2017 HOH HOH A . F 5 HOH 21 2018 2018 HOH HOH A . F 5 HOH 22 2019 2019 HOH HOH A . F 5 HOH 23 2020 2020 HOH HOH A . F 5 HOH 24 2021 2021 HOH HOH A . F 5 HOH 25 2022 2022 HOH HOH A . F 5 HOH 26 2023 2023 HOH HOH A . F 5 HOH 27 2024 2024 HOH HOH A . F 5 HOH 28 2025 2025 HOH HOH A . F 5 HOH 29 2026 2026 HOH HOH A . F 5 HOH 30 2027 2027 HOH HOH A . F 5 HOH 31 2028 2028 HOH HOH A . F 5 HOH 32 2029 2029 HOH HOH A . F 5 HOH 33 2030 2030 HOH HOH A . F 5 HOH 34 2031 2031 HOH HOH A . F 5 HOH 35 2032 2032 HOH HOH A . F 5 HOH 36 2033 2033 HOH HOH A . F 5 HOH 37 2034 2034 HOH HOH A . F 5 HOH 38 2035 2035 HOH HOH A . F 5 HOH 39 2036 2036 HOH HOH A . F 5 HOH 40 2037 2037 HOH HOH A . F 5 HOH 41 2038 2038 HOH HOH A . F 5 HOH 42 2039 2039 HOH HOH A . F 5 HOH 43 2040 2040 HOH HOH A . F 5 HOH 44 2041 2041 HOH HOH A . F 5 HOH 45 2042 2042 HOH HOH A . F 5 HOH 46 2043 2043 HOH HOH A . F 5 HOH 47 2044 2044 HOH HOH A . F 5 HOH 48 2045 2045 HOH HOH A . F 5 HOH 49 2046 2046 HOH HOH A . F 5 HOH 50 2047 2047 HOH HOH A . F 5 HOH 51 2048 2048 HOH HOH A . F 5 HOH 52 2049 2049 HOH HOH A . F 5 HOH 53 2050 2050 HOH HOH A . F 5 HOH 54 2051 2051 HOH HOH A . F 5 HOH 55 2052 2052 HOH HOH A . F 5 HOH 56 2053 2053 HOH HOH A . F 5 HOH 57 2054 2054 HOH HOH A . F 5 HOH 58 2055 2055 HOH HOH A . F 5 HOH 59 2056 2056 HOH HOH A . F 5 HOH 60 2057 2057 HOH HOH A . F 5 HOH 61 2058 2058 HOH HOH A . F 5 HOH 62 2059 2059 HOH HOH A . F 5 HOH 63 2061 2061 HOH HOH A . F 5 HOH 64 2062 2062 HOH HOH A . F 5 HOH 65 2063 2063 HOH HOH A . F 5 HOH 66 2064 2064 HOH HOH A . F 5 HOH 67 2065 2065 HOH HOH A . F 5 HOH 68 2066 2066 HOH HOH A . F 5 HOH 69 2067 2067 HOH HOH A . F 5 HOH 70 2068 2068 HOH HOH A . F 5 HOH 71 2069 2069 HOH HOH A . F 5 HOH 72 2070 2070 HOH HOH A . F 5 HOH 73 2071 2071 HOH HOH A . F 5 HOH 74 2072 2072 HOH HOH A . F 5 HOH 75 2073 2073 HOH HOH A . F 5 HOH 76 2074 2074 HOH HOH A . F 5 HOH 77 2075 2075 HOH HOH A . F 5 HOH 78 2076 2076 HOH HOH A . F 5 HOH 79 2077 2077 HOH HOH A . F 5 HOH 80 2078 2078 HOH HOH A . F 5 HOH 81 2079 2079 HOH HOH A . F 5 HOH 82 2081 2081 HOH HOH A . F 5 HOH 83 2082 2082 HOH HOH A . F 5 HOH 84 2083 2083 HOH HOH A . F 5 HOH 85 2084 2084 HOH HOH A . F 5 HOH 86 2085 2085 HOH HOH A . F 5 HOH 87 2086 2086 HOH HOH A . F 5 HOH 88 2087 2087 HOH HOH A . F 5 HOH 89 2088 2088 HOH HOH A . F 5 HOH 90 2089 2089 HOH HOH A . F 5 HOH 91 2090 2090 HOH HOH A . F 5 HOH 92 2091 2091 HOH HOH A . F 5 HOH 93 2092 2092 HOH HOH A . F 5 HOH 94 2093 2093 HOH HOH A . F 5 HOH 95 2094 2094 HOH HOH A . F 5 HOH 96 2095 2095 HOH HOH A . F 5 HOH 97 2096 2096 HOH HOH A . F 5 HOH 98 2097 2097 HOH HOH A . F 5 HOH 99 2098 2098 HOH HOH A . F 5 HOH 100 2099 2099 HOH HOH A . F 5 HOH 101 2100 2100 HOH HOH A . F 5 HOH 102 2101 2101 HOH HOH A . F 5 HOH 103 2102 2102 HOH HOH A . F 5 HOH 104 2103 2103 HOH HOH A . F 5 HOH 105 2104 2104 HOH HOH A . F 5 HOH 106 2105 2105 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 8430 ? 1 MORE -80.7 ? 1 'SSA (A^2)' 19360 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 10_665 -x+1,-y+1,z -1.0000000000 0.0000000000 0.0000000000 67.8880000000 0.0000000000 -1.0000000000 0.0000000000 67.8880000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 2084 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id F _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 NE2 ? A HIS 99 ? A HIS 100 ? 1_555 MG ? E MG . ? A MG 1212 ? 1_555 O11 ? D DXT . ? A DXT 1211 ? 1_555 163.0 ? 2 NE2 ? A HIS 99 ? A HIS 100 ? 1_555 MG ? E MG . ? A MG 1212 ? 1_555 O12 ? D DXT . ? A DXT 1211 ? 1_555 90.1 ? 3 O11 ? D DXT . ? A DXT 1211 ? 1_555 MG ? E MG . ? A MG 1212 ? 1_555 O12 ? D DXT . ? A DXT 1211 ? 1_555 75.3 ? 4 NE2 ? A HIS 99 ? A HIS 100 ? 1_555 MG ? E MG . ? A MG 1212 ? 1_555 O ? F HOH . ? A HOH 1213 ? 1_555 98.0 ? 5 O11 ? D DXT . ? A DXT 1211 ? 1_555 MG ? E MG . ? A MG 1212 ? 1_555 O ? F HOH . ? A HOH 1213 ? 1_555 96.4 ? 6 O12 ? D DXT . ? A DXT 1211 ? 1_555 MG ? E MG . ? A MG 1212 ? 1_555 O ? F HOH . ? A HOH 1213 ? 1_555 171.6 ? 7 NE2 ? A HIS 99 ? A HIS 100 ? 1_555 MG ? E MG . ? A MG 1212 ? 1_555 O ? F HOH . ? A HOH 1214 ? 1_555 96.0 ? 8 O11 ? D DXT . ? A DXT 1211 ? 1_555 MG ? E MG . ? A MG 1212 ? 1_555 O ? F HOH . ? A HOH 1214 ? 1_555 93.1 ? 9 O12 ? D DXT . ? A DXT 1211 ? 1_555 MG ? E MG . ? A MG 1212 ? 1_555 O ? F HOH . ? A HOH 1214 ? 1_555 92.1 ? 10 O ? F HOH . ? A HOH 1213 ? 1_555 MG ? E MG . ? A MG 1212 ? 1_555 O ? F HOH . ? A HOH 1214 ? 1_555 89.5 ? 11 NE2 ? A HIS 99 ? A HIS 100 ? 1_555 MG ? E MG . ? A MG 1212 ? 1_555 O ? F HOH . ? A HOH 1215 ? 1_555 90.6 ? 12 O11 ? D DXT . ? A DXT 1211 ? 1_555 MG ? E MG . ? A MG 1212 ? 1_555 O ? F HOH . ? A HOH 1215 ? 1_555 82.7 ? 13 O12 ? D DXT . ? A DXT 1211 ? 1_555 MG ? E MG . ? A MG 1212 ? 1_555 O ? F HOH . ? A HOH 1215 ? 1_555 96.2 ? 14 O ? F HOH . ? A HOH 1213 ? 1_555 MG ? E MG . ? A MG 1212 ? 1_555 O ? F HOH . ? A HOH 1215 ? 1_555 81.4 ? 15 O ? F HOH . ? A HOH 1214 ? 1_555 MG ? E MG . ? A MG 1212 ? 1_555 O ? F HOH . ? A HOH 1215 ? 1_555 169.4 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-10-05 2 'Structure model' 1 1 2019-05-08 3 'Structure model' 1 2 2020-03-18 4 'Structure model' 1 3 2023-12-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Derived calculations' 3 2 'Structure model' 'Experimental preparation' 4 2 'Structure model' Other 5 3 'Structure model' 'Database references' 6 3 'Structure model' Other 7 4 'Structure model' 'Data collection' 8 4 'Structure model' 'Database references' 9 4 'Structure model' 'Derived calculations' 10 4 'Structure model' 'Refinement description' 11 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' database_PDB_rev 2 2 'Structure model' database_PDB_rev_record 3 2 'Structure model' exptl_crystal_grow 4 2 'Structure model' pdbx_database_proc 5 2 'Structure model' pdbx_database_status 6 2 'Structure model' pdbx_struct_special_symmetry 7 3 'Structure model' citation 8 3 'Structure model' citation_author 9 3 'Structure model' pdbx_database_status 10 4 'Structure model' chem_comp 11 4 'Structure model' chem_comp_atom 12 4 'Structure model' chem_comp_bond 13 4 'Structure model' database_2 14 4 'Structure model' pdbx_initial_refinement_model 15 4 'Structure model' pdbx_struct_conn_angle 16 4 'Structure model' struct_conn 17 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_exptl_crystal_grow.method' 2 2 'Structure model' '_pdbx_database_status.recvd_author_approval' 3 3 'Structure model' '_citation.journal_abbrev' 4 3 'Structure model' '_citation.journal_id_CSD' 5 3 'Structure model' '_citation.journal_id_ISSN' 6 3 'Structure model' '_citation.journal_volume' 7 3 'Structure model' '_citation.page_first' 8 3 'Structure model' '_citation.page_last' 9 3 'Structure model' '_citation.pdbx_database_id_DOI' 10 3 'Structure model' '_citation.pdbx_database_id_PubMed' 11 3 'Structure model' '_citation.title' 12 3 'Structure model' '_citation.year' 13 3 'Structure model' '_pdbx_database_status.status_code_sf' 14 4 'Structure model' '_chem_comp.pdbx_synonyms' 15 4 'Structure model' '_database_2.pdbx_DOI' 16 4 'Structure model' '_database_2.pdbx_database_accession' 17 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 18 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 19 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 20 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 21 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 22 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 23 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 24 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 25 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 26 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 27 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 28 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 29 4 'Structure model' '_pdbx_struct_conn_angle.value' 30 4 'Structure model' '_struct_conn.pdbx_dist_value' 31 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 32 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 33 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 34 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 35 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 36 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 37 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 38 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 39 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 40 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 41 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 42 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 43 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 44 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 45 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 18.8930 28.2130 13.9100 0.1624 0.2075 0.0959 -0.0042 -0.0350 -0.0141 0.8533 0.0662 2.8412 -0.2216 1.4237 -0.3209 0.0673 0.0735 -0.0574 -0.0042 0.0063 0.0270 0.1101 0.1694 -0.0736 'X-RAY DIFFRACTION' 2 ? refined 22.5830 28.3140 36.1530 0.1834 0.1834 0.0893 0.0705 -0.0151 0.0059 0.2917 0.0728 2.9205 0.0948 0.5876 0.3932 0.0274 0.0340 -0.0777 0.0312 0.0155 0.0185 0.0746 -0.0891 -0.0429 'X-RAY DIFFRACTION' 3 ? refined 32.2330 30.9630 39.5720 0.2183 0.1368 0.1022 0.1054 -0.0098 -0.0377 1.2417 0.0617 1.0748 -0.2666 0.2161 -0.0150 0.1650 0.1085 -0.1532 -0.0304 -0.0433 0.0447 0.0190 -0.0031 -0.1217 'X-RAY DIFFRACTION' 4 ? refined 20.7070 36.2020 35.4190 0.2109 0.2111 0.0798 0.1446 -0.0111 0.0254 2.7813 3.5387 4.5464 0.4519 -2.4649 2.4602 0.1374 0.3785 0.0713 0.0095 -0.0772 0.0154 -0.1404 -0.4508 -0.0602 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 2 ? ? A 45 ? ? ? ? 'X-RAY DIFFRACTION' 2 1 A 46 ? ? A 64 ? ? ? ? 'X-RAY DIFFRACTION' 3 1 A 1209 ? ? A 1210 ? ? ? ? 'X-RAY DIFFRACTION' 4 2 A 65 ? ? A 93 ? ? ? ? 'X-RAY DIFFRACTION' 5 2 A 94 ? ? A 100 ? ? ? ? 'X-RAY DIFFRACTION' 6 2 A 101 ? ? A 106 ? ? ? ? 'X-RAY DIFFRACTION' 7 3 A 166 ? ? A 181 ? ? ? ? 'X-RAY DIFFRACTION' 8 3 A 107 ? ? A 123 ? ? ? ? 'X-RAY DIFFRACTION' 9 3 A 124 ? ? A 165 ? ? ? ? 'X-RAY DIFFRACTION' 10 3 A 182 ? ? A 208 ? ? ? ? 'X-RAY DIFFRACTION' 11 4 A 1211 ? ? A 1215 ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.5.0109 ? 1 d*TREK 'data reduction' . ? 2 d*TREK 'data scaling' . ? 3 REFMAC phasing . ? 4 # _pdbx_entry_details.entry_id 2XRL _pdbx_entry_details.compound_details 'ENGINEERED RESIDUE IN CHAIN A, THR 103 TO ALA' _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ;(4S,4AR,5S,5AR,6R,12AS)-4-(DIMETHYLAMINO)-3,5,10,12, 12A-PENTAHYDROXY-6-METHYL-1,11-DIOXO-1,4,4A,5,5A,6,11, 12A-OCTAHYDROTETRACENE-2-CARBOXAMIDE (DXT): COMMON NAME DOXYCYCLINE ; _pdbx_entry_details.sequence_details 'C-TERMINAL 10 RESIDUES WERE REMOVED FOR IMPROVED CRYSTALLIZATION.' _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 CB _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 GLU _pdbx_validate_rmsd_bond.auth_seq_id_1 58 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 CG _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 GLU _pdbx_validate_rmsd_bond.auth_seq_id_2 58 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.632 _pdbx_validate_rmsd_bond.bond_target_value 1.517 _pdbx_validate_rmsd_bond.bond_deviation 0.115 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.019 _pdbx_validate_rmsd_bond.linker_flag N # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 NE _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 ARG _pdbx_validate_rmsd_angle.auth_seq_id_1 80 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CZ _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 ARG _pdbx_validate_rmsd_angle.auth_seq_id_2 80 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 NH1 _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 ARG _pdbx_validate_rmsd_angle.auth_seq_id_3 80 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 123.63 _pdbx_validate_rmsd_angle.angle_target_value 120.30 _pdbx_validate_rmsd_angle.angle_deviation 3.33 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.50 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 TYR A 66 ? ? -115.47 60.26 2 1 ASP A 163 ? ? -76.11 20.80 3 1 ASP A 178 ? ? -101.04 63.00 4 1 ASP A 180 ? ? -124.99 -156.73 5 1 ASP A 181 ? ? -101.66 46.35 6 1 LEU A 204 ? ? 53.57 -118.16 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CL CL CL N N 74 DXT C1 C N N 75 DXT O1 O N N 76 DXT C2 C N N 77 DXT O21 O N N 78 DXT C21 C N N 79 DXT N21 N N N 80 DXT C3 C N N 81 DXT O3 O N N 82 DXT C4 C N R 83 DXT N4 N N N 84 DXT C41 C N N 85 DXT C42 C N N 86 DXT C4A C N S 87 DXT C5 C N S 88 DXT O5 O N N 89 DXT C5A C N R 90 DXT C6 C N R 91 DXT C61 C N N 92 DXT C6A C Y N 93 DXT C7 C Y N 94 DXT C8 C Y N 95 DXT C9 C Y N 96 DXT C10 C Y N 97 DXT O10 O N N 98 DXT C6B C Y N 99 DXT C11 C N N 100 DXT O11 O N N 101 DXT C5B C N N 102 DXT C12 C N N 103 DXT O12 O N N 104 DXT C4B C N S 105 DXT O13 O N N 106 DXT H10 H N N 107 DXT H12 H N N 108 DXT H13 H N N 109 DXT H211 H N N 110 DXT H212 H N N 111 DXT HO3 H N N 112 DXT H4 H N N 113 DXT H411 H N N 114 DXT H412 H N N 115 DXT H413 H N N 116 DXT H421 H N N 117 DXT H422 H N N 118 DXT H423 H N N 119 DXT H4A H N N 120 DXT H5 H N N 121 DXT HO5 H N N 122 DXT H5A H N N 123 DXT H6 H N N 124 DXT H7 H N N 125 DXT H8 H N N 126 DXT H9 H N N 127 DXT H611 H N N 128 DXT H612 H N N 129 DXT H613 H N N 130 GLN N N N N 131 GLN CA C N S 132 GLN C C N N 133 GLN O O N N 134 GLN CB C N N 135 GLN CG C N N 136 GLN CD C N N 137 GLN OE1 O N N 138 GLN NE2 N N N 139 GLN OXT O N N 140 GLN H H N N 141 GLN H2 H N N 142 GLN HA H N N 143 GLN HB2 H N N 144 GLN HB3 H N N 145 GLN HG2 H N N 146 GLN HG3 H N N 147 GLN HE21 H N N 148 GLN HE22 H N N 149 GLN HXT H N N 150 GLU N N N N 151 GLU CA C N S 152 GLU C C N N 153 GLU O O N N 154 GLU CB C N N 155 GLU CG C N N 156 GLU CD C N N 157 GLU OE1 O N N 158 GLU OE2 O N N 159 GLU OXT O N N 160 GLU H H N N 161 GLU H2 H N N 162 GLU HA H N N 163 GLU HB2 H N N 164 GLU HB3 H N N 165 GLU HG2 H N N 166 GLU HG3 H N N 167 GLU HE2 H N N 168 GLU HXT H N N 169 GLY N N N N 170 GLY CA C N N 171 GLY C C N N 172 GLY O O N N 173 GLY OXT O N N 174 GLY H H N N 175 GLY H2 H N N 176 GLY HA2 H N N 177 GLY HA3 H N N 178 GLY HXT H N N 179 HIS N N N N 180 HIS CA C N S 181 HIS C C N N 182 HIS O O N N 183 HIS CB C N N 184 HIS CG C Y N 185 HIS ND1 N Y N 186 HIS CD2 C Y N 187 HIS CE1 C Y N 188 HIS NE2 N Y N 189 HIS OXT O N N 190 HIS H H N N 191 HIS H2 H N N 192 HIS HA H N N 193 HIS HB2 H N N 194 HIS HB3 H N N 195 HIS HD1 H N N 196 HIS HD2 H N N 197 HIS HE1 H N N 198 HIS HE2 H N N 199 HIS HXT H N N 200 HOH O O N N 201 HOH H1 H N N 202 HOH H2 H N N 203 ILE N N N N 204 ILE CA C N S 205 ILE C C N N 206 ILE O O N N 207 ILE CB C N S 208 ILE CG1 C N N 209 ILE CG2 C N N 210 ILE CD1 C N N 211 ILE OXT O N N 212 ILE H H N N 213 ILE H2 H N N 214 ILE HA H N N 215 ILE HB H N N 216 ILE HG12 H N N 217 ILE HG13 H N N 218 ILE HG21 H N N 219 ILE HG22 H N N 220 ILE HG23 H N N 221 ILE HD11 H N N 222 ILE HD12 H N N 223 ILE HD13 H N N 224 ILE HXT H N N 225 LEU N N N N 226 LEU CA C N S 227 LEU C C N N 228 LEU O O N N 229 LEU CB C N N 230 LEU CG C N N 231 LEU CD1 C N N 232 LEU CD2 C N N 233 LEU OXT O N N 234 LEU H H N N 235 LEU H2 H N N 236 LEU HA H N N 237 LEU HB2 H N N 238 LEU HB3 H N N 239 LEU HG H N N 240 LEU HD11 H N N 241 LEU HD12 H N N 242 LEU HD13 H N N 243 LEU HD21 H N N 244 LEU HD22 H N N 245 LEU HD23 H N N 246 LEU HXT H N N 247 LYS N N N N 248 LYS CA C N S 249 LYS C C N N 250 LYS O O N N 251 LYS CB C N N 252 LYS CG C N N 253 LYS CD C N N 254 LYS CE C N N 255 LYS NZ N N N 256 LYS OXT O N N 257 LYS H H N N 258 LYS H2 H N N 259 LYS HA H N N 260 LYS HB2 H N N 261 LYS HB3 H N N 262 LYS HG2 H N N 263 LYS HG3 H N N 264 LYS HD2 H N N 265 LYS HD3 H N N 266 LYS HE2 H N N 267 LYS HE3 H N N 268 LYS HZ1 H N N 269 LYS HZ2 H N N 270 LYS HZ3 H N N 271 LYS HXT H N N 272 MET N N N N 273 MET CA C N S 274 MET C C N N 275 MET O O N N 276 MET CB C N N 277 MET CG C N N 278 MET SD S N N 279 MET CE C N N 280 MET OXT O N N 281 MET H H N N 282 MET H2 H N N 283 MET HA H N N 284 MET HB2 H N N 285 MET HB3 H N N 286 MET HG2 H N N 287 MET HG3 H N N 288 MET HE1 H N N 289 MET HE2 H N N 290 MET HE3 H N N 291 MET HXT H N N 292 MG MG MG N N 293 PHE N N N N 294 PHE CA C N S 295 PHE C C N N 296 PHE O O N N 297 PHE CB C N N 298 PHE CG C Y N 299 PHE CD1 C Y N 300 PHE CD2 C Y N 301 PHE CE1 C Y N 302 PHE CE2 C Y N 303 PHE CZ C Y N 304 PHE OXT O N N 305 PHE H H N N 306 PHE H2 H N N 307 PHE HA H N N 308 PHE HB2 H N N 309 PHE HB3 H N N 310 PHE HD1 H N N 311 PHE HD2 H N N 312 PHE HE1 H N N 313 PHE HE2 H N N 314 PHE HZ H N N 315 PHE HXT H N N 316 PRO N N N N 317 PRO CA C N S 318 PRO C C N N 319 PRO O O N N 320 PRO CB C N N 321 PRO CG C N N 322 PRO CD C N N 323 PRO OXT O N N 324 PRO H H N N 325 PRO HA H N N 326 PRO HB2 H N N 327 PRO HB3 H N N 328 PRO HG2 H N N 329 PRO HG3 H N N 330 PRO HD2 H N N 331 PRO HD3 H N N 332 PRO HXT H N N 333 SER N N N N 334 SER CA C N S 335 SER C C N N 336 SER O O N N 337 SER CB C N N 338 SER OG O N N 339 SER OXT O N N 340 SER H H N N 341 SER H2 H N N 342 SER HA H N N 343 SER HB2 H N N 344 SER HB3 H N N 345 SER HG H N N 346 SER HXT H N N 347 THR N N N N 348 THR CA C N S 349 THR C C N N 350 THR O O N N 351 THR CB C N R 352 THR OG1 O N N 353 THR CG2 C N N 354 THR OXT O N N 355 THR H H N N 356 THR H2 H N N 357 THR HA H N N 358 THR HB H N N 359 THR HG1 H N N 360 THR HG21 H N N 361 THR HG22 H N N 362 THR HG23 H N N 363 THR HXT H N N 364 TRP N N N N 365 TRP CA C N S 366 TRP C C N N 367 TRP O O N N 368 TRP CB C N N 369 TRP CG C Y N 370 TRP CD1 C Y N 371 TRP CD2 C Y N 372 TRP NE1 N Y N 373 TRP CE2 C Y N 374 TRP CE3 C Y N 375 TRP CZ2 C Y N 376 TRP CZ3 C Y N 377 TRP CH2 C Y N 378 TRP OXT O N N 379 TRP H H N N 380 TRP H2 H N N 381 TRP HA H N N 382 TRP HB2 H N N 383 TRP HB3 H N N 384 TRP HD1 H N N 385 TRP HE1 H N N 386 TRP HE3 H N N 387 TRP HZ2 H N N 388 TRP HZ3 H N N 389 TRP HH2 H N N 390 TRP HXT H N N 391 TYR N N N N 392 TYR CA C N S 393 TYR C C N N 394 TYR O O N N 395 TYR CB C N N 396 TYR CG C Y N 397 TYR CD1 C Y N 398 TYR CD2 C Y N 399 TYR CE1 C Y N 400 TYR CE2 C Y N 401 TYR CZ C Y N 402 TYR OH O N N 403 TYR OXT O N N 404 TYR H H N N 405 TYR H2 H N N 406 TYR HA H N N 407 TYR HB2 H N N 408 TYR HB3 H N N 409 TYR HD1 H N N 410 TYR HD2 H N N 411 TYR HE1 H N N 412 TYR HE2 H N N 413 TYR HH H N N 414 TYR HXT H N N 415 VAL N N N N 416 VAL CA C N S 417 VAL C C N N 418 VAL O O N N 419 VAL CB C N N 420 VAL CG1 C N N 421 VAL CG2 C N N 422 VAL OXT O N N 423 VAL H H N N 424 VAL H2 H N N 425 VAL HA H N N 426 VAL HB H N N 427 VAL HG11 H N N 428 VAL HG12 H N N 429 VAL HG13 H N N 430 VAL HG21 H N N 431 VAL HG22 H N N 432 VAL HG23 H N N 433 VAL HXT H N N 434 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 DXT C1 C4B sing N N 70 DXT C1 O1 doub N N 71 DXT C1 C2 sing N N 72 DXT C2 C21 sing N N 73 DXT C2 C3 doub N N 74 DXT O21 C21 doub N N 75 DXT C21 N21 sing N N 76 DXT N21 H211 sing N N 77 DXT N21 H212 sing N N 78 DXT C3 O3 sing N N 79 DXT C3 C4 sing N N 80 DXT O3 HO3 sing N N 81 DXT C4 H4 sing N N 82 DXT C4 N4 sing N N 83 DXT C4 C4A sing N N 84 DXT N4 C41 sing N N 85 DXT N4 C42 sing N N 86 DXT C41 H411 sing N N 87 DXT C41 H412 sing N N 88 DXT C41 H413 sing N N 89 DXT C42 H421 sing N N 90 DXT C42 H422 sing N N 91 DXT C42 H423 sing N N 92 DXT C4A C4B sing N N 93 DXT C4A H4A sing N N 94 DXT C4A C5 sing N N 95 DXT C5 H5 sing N N 96 DXT C5 O5 sing N N 97 DXT C5 C5A sing N N 98 DXT O5 HO5 sing N N 99 DXT C5A C5B sing N N 100 DXT C5A H5A sing N N 101 DXT C5A C6 sing N N 102 DXT C6 H6 sing N N 103 DXT C6 C6A sing N N 104 DXT C6 C61 sing N N 105 DXT C61 H611 sing N N 106 DXT C61 H612 sing N N 107 DXT C61 H613 sing N N 108 DXT C6A C6B sing Y N 109 DXT C6A C7 doub Y N 110 DXT C7 H7 sing N N 111 DXT C7 C8 sing Y N 112 DXT C8 H8 sing N N 113 DXT C8 C9 doub Y N 114 DXT C9 C10 sing Y N 115 DXT C9 H9 sing N N 116 DXT C10 O10 sing N N 117 DXT C10 C6B doub Y N 118 DXT O10 H10 sing N N 119 DXT C6B C11 sing N N 120 DXT C11 O11 doub N N 121 DXT C11 C5B sing N N 122 DXT C5B C12 doub N N 123 DXT C12 O12 sing N N 124 DXT C12 C4B sing N N 125 DXT O12 H12 sing N N 126 DXT C4B O13 sing N N 127 DXT O13 H13 sing N N 128 GLN N CA sing N N 129 GLN N H sing N N 130 GLN N H2 sing N N 131 GLN CA C sing N N 132 GLN CA CB sing N N 133 GLN CA HA sing N N 134 GLN C O doub N N 135 GLN C OXT sing N N 136 GLN CB CG sing N N 137 GLN CB HB2 sing N N 138 GLN CB HB3 sing N N 139 GLN CG CD sing N N 140 GLN CG HG2 sing N N 141 GLN CG HG3 sing N N 142 GLN CD OE1 doub N N 143 GLN CD NE2 sing N N 144 GLN NE2 HE21 sing N N 145 GLN NE2 HE22 sing N N 146 GLN OXT HXT sing N N 147 GLU N CA sing N N 148 GLU N H sing N N 149 GLU N H2 sing N N 150 GLU CA C sing N N 151 GLU CA CB sing N N 152 GLU CA HA sing N N 153 GLU C O doub N N 154 GLU C OXT sing N N 155 GLU CB CG sing N N 156 GLU CB HB2 sing N N 157 GLU CB HB3 sing N N 158 GLU CG CD sing N N 159 GLU CG HG2 sing N N 160 GLU CG HG3 sing N N 161 GLU CD OE1 doub N N 162 GLU CD OE2 sing N N 163 GLU OE2 HE2 sing N N 164 GLU OXT HXT sing N N 165 GLY N CA sing N N 166 GLY N H sing N N 167 GLY N H2 sing N N 168 GLY CA C sing N N 169 GLY CA HA2 sing N N 170 GLY CA HA3 sing N N 171 GLY C O doub N N 172 GLY C OXT sing N N 173 GLY OXT HXT sing N N 174 HIS N CA sing N N 175 HIS N H sing N N 176 HIS N H2 sing N N 177 HIS CA C sing N N 178 HIS CA CB sing N N 179 HIS CA HA sing N N 180 HIS C O doub N N 181 HIS C OXT sing N N 182 HIS CB CG sing N N 183 HIS CB HB2 sing N N 184 HIS CB HB3 sing N N 185 HIS CG ND1 sing Y N 186 HIS CG CD2 doub Y N 187 HIS ND1 CE1 doub Y N 188 HIS ND1 HD1 sing N N 189 HIS CD2 NE2 sing Y N 190 HIS CD2 HD2 sing N N 191 HIS CE1 NE2 sing Y N 192 HIS CE1 HE1 sing N N 193 HIS NE2 HE2 sing N N 194 HIS OXT HXT sing N N 195 HOH O H1 sing N N 196 HOH O H2 sing N N 197 ILE N CA sing N N 198 ILE N H sing N N 199 ILE N H2 sing N N 200 ILE CA C sing N N 201 ILE CA CB sing N N 202 ILE CA HA sing N N 203 ILE C O doub N N 204 ILE C OXT sing N N 205 ILE CB CG1 sing N N 206 ILE CB CG2 sing N N 207 ILE CB HB sing N N 208 ILE CG1 CD1 sing N N 209 ILE CG1 HG12 sing N N 210 ILE CG1 HG13 sing N N 211 ILE CG2 HG21 sing N N 212 ILE CG2 HG22 sing N N 213 ILE CG2 HG23 sing N N 214 ILE CD1 HD11 sing N N 215 ILE CD1 HD12 sing N N 216 ILE CD1 HD13 sing N N 217 ILE OXT HXT sing N N 218 LEU N CA sing N N 219 LEU N H sing N N 220 LEU N H2 sing N N 221 LEU CA C sing N N 222 LEU CA CB sing N N 223 LEU CA HA sing N N 224 LEU C O doub N N 225 LEU C OXT sing N N 226 LEU CB CG sing N N 227 LEU CB HB2 sing N N 228 LEU CB HB3 sing N N 229 LEU CG CD1 sing N N 230 LEU CG CD2 sing N N 231 LEU CG HG sing N N 232 LEU CD1 HD11 sing N N 233 LEU CD1 HD12 sing N N 234 LEU CD1 HD13 sing N N 235 LEU CD2 HD21 sing N N 236 LEU CD2 HD22 sing N N 237 LEU CD2 HD23 sing N N 238 LEU OXT HXT sing N N 239 LYS N CA sing N N 240 LYS N H sing N N 241 LYS N H2 sing N N 242 LYS CA C sing N N 243 LYS CA CB sing N N 244 LYS CA HA sing N N 245 LYS C O doub N N 246 LYS C OXT sing N N 247 LYS CB CG sing N N 248 LYS CB HB2 sing N N 249 LYS CB HB3 sing N N 250 LYS CG CD sing N N 251 LYS CG HG2 sing N N 252 LYS CG HG3 sing N N 253 LYS CD CE sing N N 254 LYS CD HD2 sing N N 255 LYS CD HD3 sing N N 256 LYS CE NZ sing N N 257 LYS CE HE2 sing N N 258 LYS CE HE3 sing N N 259 LYS NZ HZ1 sing N N 260 LYS NZ HZ2 sing N N 261 LYS NZ HZ3 sing N N 262 LYS OXT HXT sing N N 263 MET N CA sing N N 264 MET N H sing N N 265 MET N H2 sing N N 266 MET CA C sing N N 267 MET CA CB sing N N 268 MET CA HA sing N N 269 MET C O doub N N 270 MET C OXT sing N N 271 MET CB CG sing N N 272 MET CB HB2 sing N N 273 MET CB HB3 sing N N 274 MET CG SD sing N N 275 MET CG HG2 sing N N 276 MET CG HG3 sing N N 277 MET SD CE sing N N 278 MET CE HE1 sing N N 279 MET CE HE2 sing N N 280 MET CE HE3 sing N N 281 MET OXT HXT sing N N 282 PHE N CA sing N N 283 PHE N H sing N N 284 PHE N H2 sing N N 285 PHE CA C sing N N 286 PHE CA CB sing N N 287 PHE CA HA sing N N 288 PHE C O doub N N 289 PHE C OXT sing N N 290 PHE CB CG sing N N 291 PHE CB HB2 sing N N 292 PHE CB HB3 sing N N 293 PHE CG CD1 doub Y N 294 PHE CG CD2 sing Y N 295 PHE CD1 CE1 sing Y N 296 PHE CD1 HD1 sing N N 297 PHE CD2 CE2 doub Y N 298 PHE CD2 HD2 sing N N 299 PHE CE1 CZ doub Y N 300 PHE CE1 HE1 sing N N 301 PHE CE2 CZ sing Y N 302 PHE CE2 HE2 sing N N 303 PHE CZ HZ sing N N 304 PHE OXT HXT sing N N 305 PRO N CA sing N N 306 PRO N CD sing N N 307 PRO N H sing N N 308 PRO CA C sing N N 309 PRO CA CB sing N N 310 PRO CA HA sing N N 311 PRO C O doub N N 312 PRO C OXT sing N N 313 PRO CB CG sing N N 314 PRO CB HB2 sing N N 315 PRO CB HB3 sing N N 316 PRO CG CD sing N N 317 PRO CG HG2 sing N N 318 PRO CG HG3 sing N N 319 PRO CD HD2 sing N N 320 PRO CD HD3 sing N N 321 PRO OXT HXT sing N N 322 SER N CA sing N N 323 SER N H sing N N 324 SER N H2 sing N N 325 SER CA C sing N N 326 SER CA CB sing N N 327 SER CA HA sing N N 328 SER C O doub N N 329 SER C OXT sing N N 330 SER CB OG sing N N 331 SER CB HB2 sing N N 332 SER CB HB3 sing N N 333 SER OG HG sing N N 334 SER OXT HXT sing N N 335 THR N CA sing N N 336 THR N H sing N N 337 THR N H2 sing N N 338 THR CA C sing N N 339 THR CA CB sing N N 340 THR CA HA sing N N 341 THR C O doub N N 342 THR C OXT sing N N 343 THR CB OG1 sing N N 344 THR CB CG2 sing N N 345 THR CB HB sing N N 346 THR OG1 HG1 sing N N 347 THR CG2 HG21 sing N N 348 THR CG2 HG22 sing N N 349 THR CG2 HG23 sing N N 350 THR OXT HXT sing N N 351 TRP N CA sing N N 352 TRP N H sing N N 353 TRP N H2 sing N N 354 TRP CA C sing N N 355 TRP CA CB sing N N 356 TRP CA HA sing N N 357 TRP C O doub N N 358 TRP C OXT sing N N 359 TRP CB CG sing N N 360 TRP CB HB2 sing N N 361 TRP CB HB3 sing N N 362 TRP CG CD1 doub Y N 363 TRP CG CD2 sing Y N 364 TRP CD1 NE1 sing Y N 365 TRP CD1 HD1 sing N N 366 TRP CD2 CE2 doub Y N 367 TRP CD2 CE3 sing Y N 368 TRP NE1 CE2 sing Y N 369 TRP NE1 HE1 sing N N 370 TRP CE2 CZ2 sing Y N 371 TRP CE3 CZ3 doub Y N 372 TRP CE3 HE3 sing N N 373 TRP CZ2 CH2 doub Y N 374 TRP CZ2 HZ2 sing N N 375 TRP CZ3 CH2 sing Y N 376 TRP CZ3 HZ3 sing N N 377 TRP CH2 HH2 sing N N 378 TRP OXT HXT sing N N 379 TYR N CA sing N N 380 TYR N H sing N N 381 TYR N H2 sing N N 382 TYR CA C sing N N 383 TYR CA CB sing N N 384 TYR CA HA sing N N 385 TYR C O doub N N 386 TYR C OXT sing N N 387 TYR CB CG sing N N 388 TYR CB HB2 sing N N 389 TYR CB HB3 sing N N 390 TYR CG CD1 doub Y N 391 TYR CG CD2 sing Y N 392 TYR CD1 CE1 sing Y N 393 TYR CD1 HD1 sing N N 394 TYR CD2 CE2 doub Y N 395 TYR CD2 HD2 sing N N 396 TYR CE1 CZ doub Y N 397 TYR CE1 HE1 sing N N 398 TYR CE2 CZ sing Y N 399 TYR CE2 HE2 sing N N 400 TYR CZ OH sing N N 401 TYR OH HH sing N N 402 TYR OXT HXT sing N N 403 VAL N CA sing N N 404 VAL N H sing N N 405 VAL N H2 sing N N 406 VAL CA C sing N N 407 VAL CA CB sing N N 408 VAL CA HA sing N N 409 VAL C O doub N N 410 VAL C OXT sing N N 411 VAL CB CG1 sing N N 412 VAL CB CG2 sing N N 413 VAL CB HB sing N N 414 VAL CG1 HG11 sing N N 415 VAL CG1 HG12 sing N N 416 VAL CG1 HG13 sing N N 417 VAL CG2 HG21 sing N N 418 VAL CG2 HG22 sing N N 419 VAL CG2 HG23 sing N N 420 VAL OXT HXT sing N N 421 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CHLORIDE ION' CL 3 ;(4S,4AR,5S,5AR,6R,12AS)-4-(DIMETHYLAMINO)-3,5,10,12,12A-PENTAHYDROXY-6-METHYL-1,11-DIOXO-1,4,4A,5,5A,6,11,12A-OCTAHYDROTETRACENE-2-CARBOXAMIDE ; DXT 4 'MAGNESIUM ION' MG 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2O7O _pdbx_initial_refinement_model.details 'PDB ENTRY 2O7O' #