HEADER HYDROLASE 20-SEP-10 2XRM TITLE PROCESSED INTRACELLULAR SUBTILISIN FROM B. CLAUSII COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTRACELLULAR SUBTILISIN PROTEASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PROCESSED PROTEIN, RESIDUES 19-321; COMPND 5 EC: 3.4.21.62; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 OTHER_DETAILS: N TERMINAL 18 RESIDUES DELETED SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS CLAUSII; SOURCE 3 ORGANISM_TAXID: 79880; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_VECTOR: PET; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET22B; SOURCE 8 OTHER_DETAILS: ISOLATED FROM A NOVOZYMES STRAIN B. CLAUSII STRAIN - SOURCE 9 STRAIN NUMBER AVAILABLE ON REQUEST. KEYWDS ACTIVATED FORM, POST-TRANSLATIONAL MODIFICATION, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.GAMBLE,G.KUNZE,E.J.DODSON,D.D.JONES,K.S.WILSON REVDAT 4 20-DEC-23 2XRM 1 REMARK LINK REVDAT 3 24-JAN-18 2XRM 1 SOURCE REMARK REVDAT 2 27-NOV-13 2XRM 1 SOURCE REMARK VERSN REVDAT 1 16-MAR-11 2XRM 0 JRNL AUTH M.GAMBLE,G.KUNZE,E.J.DODSON,K.S.WILSON,D.D.JONES JRNL TITL REGULATION OF AN INTRACELLULAR SUBTILISIN PROTEASE ACTIVITY JRNL TITL 2 BY A SHORT PROPEPTIDE SEQUENCE THROUGH AN ORIGINAL COMBINED JRNL TITL 3 DUAL MECHANISM. JRNL REF PROC.NATL.ACAD.SCI.USA V. 108 3536 2011 JRNL REFN ISSN 0027-8424 JRNL PMID 21307308 JRNL DOI 10.1073/PNAS.1014229108 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0081 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 66.49 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 11642 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.281 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 599 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 849 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3090 REMARK 3 BIN FREE R VALUE SET COUNT : 51 REMARK 3 BIN FREE R VALUE : 0.4450 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2209 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 26 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 69.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.479 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.326 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.254 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.922 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.929 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2264 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3055 ; 1.824 ; 1.956 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 300 ; 7.412 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 97 ;38.706 ;25.361 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 336 ;19.557 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;12.423 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 349 ; 0.132 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1725 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT. U VALUES REFINED INDIVIDUALLY. REMARK 4 REMARK 4 2XRM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-SEP-10. REMARK 100 THE DEPOSITION ID IS D_1290045332. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12244 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 108.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 19.60 REMARK 200 R MERGE (I) : 0.12000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.00 REMARK 200 R MERGE FOR SHELL (I) : 1.41000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2X8J REMARK 200 REMARK 200 REMARK: ONE CHAIN OF THE ENTRY 2X8J WAS USED AS A MODEL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 6.7 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 15555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 16555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 19555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 20555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 23555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 24555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 66.49100 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 66.49100 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 66.49100 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 66.49100 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 66.49100 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 66.49100 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 66.49100 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 66.49100 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 66.49100 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 66.49100 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 66.49100 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 66.49100 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 66.49100 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 66.49100 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 66.49100 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 66.49100 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 66.49100 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 66.49100 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 66.49100 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 66.49100 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 66.49100 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 66.49100 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 66.49100 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 66.49100 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 66.49100 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 66.49100 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 66.49100 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 66.49100 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 66.49100 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 66.49100 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 66.49100 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 66.49100 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 66.49100 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 66.49100 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 66.49100 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 66.49100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -112.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -132.98200 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2006 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2008 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2009 LIES ON A SPECIAL POSITION. REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, SER 250 TO ALA REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 320 REMARK 465 LYS A 321 REMARK 465 LEU A 322 REMARK 465 GLU A 323 REMARK 465 HIS A 324 REMARK 465 HIS A 325 REMARK 465 HIS A 326 REMARK 465 HIS A 327 REMARK 465 HIS A 328 REMARK 465 HIS A 329 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 143 CG CD CE NZ REMARK 480 ARG A 214 CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SR SR A 403 OH5 1PE A 410 1.96 REMARK 500 O THR A 191 OE1 GLU A 193 2.09 REMARK 500 O HOH A 2001 O HOH A 2002 2.12 REMARK 500 OG1 THR A 50 OD1 ASP A 82 2.14 REMARK 500 O HOH A 2024 O HOH A 2025 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 143 CB LYS A 143 CG 0.475 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 143 CA - CB - CG ANGL. DEV. = -25.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 29 33.43 73.83 REMARK 500 ASP A 49 -152.25 -158.01 REMARK 500 GLN A 53 89.02 -64.31 REMARK 500 ASP A 76 92.45 -67.94 REMARK 500 ALA A 95 28.38 -144.58 REMARK 500 THR A 99 0.99 -158.57 REMARK 500 PRO A 142 -70.86 -19.73 REMARK 500 GLU A 145 105.40 -59.01 REMARK 500 GLU A 161 151.32 -48.19 REMARK 500 GLU A 162 -17.68 81.06 REMARK 500 ASN A 174 51.80 35.70 REMARK 500 ASN A 183 47.52 -106.60 REMARK 500 GLU A 184 55.14 -119.56 REMARK 500 ASP A 186 -114.12 -88.86 REMARK 500 LEU A 213 17.30 56.74 REMARK 500 ASN A 222 -175.88 -172.82 REMARK 500 SER A 241 37.46 29.64 REMARK 500 ASP A 269 -79.25 -48.13 REMARK 500 GLU A 317 170.97 -49.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 162 LEU A 163 149.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 SODIUM ION (NA): NA OCCUPIES THE HIGH AFFINITY CALCIUM SITE REMARK 600 FOUND IN OTHER SUBTILISINS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 401 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 20 OE2 REMARK 620 2 ASP A 58 OD1 148.0 REMARK 620 3 ASP A 58 OD2 155.6 45.6 REMARK 620 4 ALA A 97 O 89.2 90.2 113.8 REMARK 620 5 THR A 99 OG1 73.0 75.0 112.8 90.5 REMARK 620 6 SER A 101 O 87.3 89.0 70.7 172.3 81.9 REMARK 620 7 VAL A 103 O 104.8 107.0 71.2 84.6 174.6 103.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 405 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 186 OD2 REMARK 620 2 ARG A 188 O 66.5 REMARK 620 3 THR A 191 O 132.4 104.0 REMARK 620 4 GLU A 193 OE2 87.7 145.3 110.6 REMARK 620 5 GLU A 193 OE1 127.9 158.0 54.1 56.7 REMARK 620 6 THR A 221 OG1 158.8 93.4 56.6 107.5 73.3 REMARK 620 7 HOH A2011 O 76.8 87.9 150.8 62.8 110.6 96.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SR A 403 SR REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 201 O REMARK 620 2 VAL A 203 O 82.8 REMARK 620 3 ASP A 226 OD2 152.1 74.4 REMARK 620 4 ASP A 226 OD1 155.2 113.8 52.5 REMARK 620 5 1PE A 410 OH4 77.0 97.6 121.3 82.4 REMARK 620 6 1PE A 410 OH6 86.2 81.5 74.9 113.5 163.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SR A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1PE A 410 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2X8J RELATED DB: PDB REMARK 900 INTRACELLULAR SUBTILISIN PRECURSOR FROM B. CLAUSII DBREF 2XRM A 19 321 UNP D0AB41 D0AB41_BACCS 19 321 SEQADV 2XRM LEU A 322 UNP D0AB41 EXPRESSION TAG SEQADV 2XRM GLU A 323 UNP D0AB41 EXPRESSION TAG SEQADV 2XRM HIS A 324 UNP D0AB41 EXPRESSION TAG SEQADV 2XRM HIS A 325 UNP D0AB41 EXPRESSION TAG SEQADV 2XRM HIS A 326 UNP D0AB41 EXPRESSION TAG SEQADV 2XRM HIS A 327 UNP D0AB41 EXPRESSION TAG SEQADV 2XRM HIS A 328 UNP D0AB41 EXPRESSION TAG SEQADV 2XRM HIS A 329 UNP D0AB41 EXPRESSION TAG SEQADV 2XRM ALA A 250 UNP D0AB41 SER 250 ENGINEERED MUTATION SEQRES 1 A 311 SER GLU VAL PRO MET GLY VAL GLU ILE VAL GLU ALA PRO SEQRES 2 A 311 ALA VAL TRP ARG ALA SER ALA LYS GLY ALA GLY GLN ILE SEQRES 3 A 311 ILE GLY VAL ILE ASP THR GLY CYS GLN VAL ASP HIS PRO SEQRES 4 A 311 ASP LEU ALA GLU ARG ILE ILE GLY GLY VAL ASN LEU THR SEQRES 5 A 311 THR ASP TYR GLY GLY ASP GLU THR ASN PHE SER ASP ASN SEQRES 6 A 311 ASN GLY HIS GLY THR HIS VAL ALA GLY THR VAL ALA ALA SEQRES 7 A 311 ALA GLU THR GLY SER GLY VAL VAL GLY VAL ALA PRO LYS SEQRES 8 A 311 ALA ASP LEU PHE ILE ILE LYS ALA LEU SER GLY ASP GLY SEQRES 9 A 311 SER GLY GLU MET GLY TRP ILE ALA LYS ALA ILE ARG TYR SEQRES 10 A 311 ALA VAL ASP TRP ARG GLY PRO LYS GLY GLU GLN MET ARG SEQRES 11 A 311 ILE ILE THR MET SER LEU GLY GLY PRO THR ASP SER GLU SEQRES 12 A 311 GLU LEU HIS ASP ALA VAL LYS TYR ALA VAL SER ASN ASN SEQRES 13 A 311 VAL SER VAL VAL CYS ALA ALA GLY ASN GLU GLY ASP GLY SEQRES 14 A 311 ARG GLU ASP THR ASN GLU PHE ALA TYR PRO ALA ALA TYR SEQRES 15 A 311 ASN GLU VAL ILE ALA VAL GLY ALA VAL ASP PHE ASP LEU SEQRES 16 A 311 ARG LEU SER ASP PHE THR ASN THR ASN GLU GLU ILE ASP SEQRES 17 A 311 ILE VAL ALA PRO GLY VAL GLY ILE LYS SER THR TYR LEU SEQRES 18 A 311 ASP SER GLY TYR ALA GLU LEU SER GLY THR ALA MET ALA SEQRES 19 A 311 ALA PRO HIS VAL ALA GLY ALA LEU ALA LEU ILE ILE ASN SEQRES 20 A 311 LEU ALA GLU ASP ALA PHE LYS ARG SER LEU SER GLU THR SEQRES 21 A 311 GLU ILE TYR ALA GLN LEU VAL ARG ARG ALA THR PRO ILE SEQRES 22 A 311 GLY PHE THR ALA GLN ALA GLU GLY ASN GLY PHE LEU THR SEQRES 23 A 311 LEU ASP LEU VAL GLU ARG ILE THR GLY GLN PHE THR GLU SEQRES 24 A 311 LYS GLY LYS LYS LEU GLU HIS HIS HIS HIS HIS HIS HET NA A 401 1 HET SR A 403 1 HET CA A 405 1 HET 1PE A 410 13 HETNAM NA SODIUM ION HETNAM SR STRONTIUM ION HETNAM CA CALCIUM ION HETNAM 1PE PENTAETHYLENE GLYCOL HETSYN 1PE PEG400 FORMUL 2 NA NA 1+ FORMUL 3 SR SR 2+ FORMUL 4 CA CA 2+ FORMUL 5 1PE C10 H22 O6 FORMUL 6 HOH *26(H2 O) HELIX 1 1 PRO A 22 VAL A 28 1 7 HELIX 2 2 ALA A 30 ALA A 38 1 9 HELIX 3 3 LYS A 39 ALA A 41 5 3 HELIX 4 4 GLY A 85 ALA A 96 1 12 HELIX 5 5 GLU A 125 TRP A 139 1 15 HELIX 6 6 GLU A 162 SER A 172 1 11 HELIX 7 7 GLY A 248 LYS A 272 1 25 HELIX 8 8 SER A 276 ARG A 286 1 11 HELIX 9 9 THR A 294 GLY A 299 1 6 HELIX 10 10 ASP A 306 GLY A 313 1 8 SHEET 1 AA 7 ILE A 63 ASN A 68 0 SHEET 2 AA 7 ASP A 111 LYS A 116 1 O LEU A 112 N ILE A 64 SHEET 3 AA 7 ILE A 44 ASP A 49 1 O ILE A 45 N PHE A 113 SHEET 4 AA 7 ILE A 149 MET A 152 1 O ILE A 149 N GLY A 46 SHEET 5 AA 7 SER A 176 ALA A 180 1 O SER A 176 N ILE A 150 SHEET 6 AA 7 ILE A 204 VAL A 209 1 O ILE A 204 N CYS A 179 SHEET 7 AA 7 ILE A 227 PRO A 230 1 O ILE A 227 N GLY A 207 SHEET 1 AB 2 ILE A 234 TYR A 238 0 SHEET 2 AB 2 GLY A 242 LEU A 246 -1 O GLY A 242 N TYR A 238 SHEET 1 AC 2 ALA A 288 THR A 289 0 SHEET 2 AC 2 PHE A 302 LEU A 303 -1 O PHE A 302 N THR A 289 LINK OE2 GLU A 20 NA NA A 401 1555 1555 2.25 LINK OD1 ASP A 58 NA NA A 401 1555 1555 2.30 LINK OD2 ASP A 58 NA NA A 401 1555 1555 3.07 LINK O ALA A 97 NA NA A 401 1555 1555 2.29 LINK OG1 THR A 99 NA NA A 401 1555 1555 2.33 LINK O SER A 101 NA NA A 401 1555 1555 2.29 LINK O VAL A 103 NA NA A 401 1555 1555 2.31 LINK OD2 ASP A 186 CA CA A 405 1555 1555 3.13 LINK O ARG A 188 CA CA A 405 1555 1555 2.27 LINK O THR A 191 CA CA A 405 1555 1555 2.28 LINK OE2 GLU A 193 CA CA A 405 1555 1555 2.28 LINK OE1 GLU A 193 CA CA A 405 1555 1555 2.31 LINK O ASN A 201 SR SR A 403 1555 1555 2.46 LINK O VAL A 203 SR SR A 403 1555 1555 2.43 LINK OG1 THR A 221 CA CA A 405 1555 1555 2.67 LINK OD2 ASP A 226 SR SR A 403 1555 1555 2.51 LINK OD1 ASP A 226 SR SR A 403 1555 1555 2.51 LINK SR SR A 403 OH4 1PE A 410 1555 1555 3.00 LINK SR SR A 403 OH6 1PE A 410 1555 1555 2.57 LINK CA CA A 405 O HOH A2011 1555 1555 2.27 CISPEP 1 TYR A 196 PRO A 197 0 14.13 SITE 1 AC1 6 GLU A 20 ASP A 58 ALA A 97 THR A 99 SITE 2 AC1 6 SER A 101 VAL A 103 SITE 1 AC2 4 ASN A 201 VAL A 203 ASP A 226 1PE A 410 SITE 1 AC3 6 ASP A 186 ARG A 188 THR A 191 GLU A 193 SITE 2 AC3 6 THR A 221 HOH A2011 SITE 1 AC4 15 VAL A 171 SER A 176 VAL A 177 TYR A 200 SITE 2 AC4 15 ASN A 201 GLU A 202 VAL A 203 ILE A 204 SITE 3 AC4 15 GLU A 224 ASP A 226 ARG A 273 GLU A 277 SITE 4 AC4 15 GLU A 279 TYR A 281 SR A 403 CRYST1 132.982 132.982 132.982 90.00 90.00 90.00 I 2 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007520 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007520 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007520 0.00000