HEADER PROTEIN TRANSPORT/VIRAL PROTEIN 24-SEP-10 2XS1 TITLE CRYSTAL STRUCTURE OF ALIX IN COMPLEX WITH THE SIVMAC239 PYKEVTEDL LATE TITLE 2 DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROGRAMMED CELL DEATH 6-INTERACTING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: BRO1-V DOMAINS, RESIDUES 1-698; COMPND 5 SYNONYM: PDCD6-INTERACTING PROTEIN, ALG-2-INTERACTING PROTEIN 1, COMPND 6 HP95; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: GAG POLYPROTEIN; COMPND 11 CHAIN: B; COMPND 12 FRAGMENT: RESIDUES 483-502; COMPND 13 SYNONYM: SIVMAC239 GAG P6; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET151 TOPO; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SIMIAN IMMUNODEFICIENCY VIRUS; SOURCE 13 ORGANISM_TAXID: 11723 KEYWDS PROTEIN TRANSPORT-VIRAL PROTEIN COMPLEX, CELL CYCLE EXPDTA X-RAY DIFFRACTION AUTHOR Q.ZHAI,M.LANDESMAN,H.ROBINSON,W.I.SUNDQUIST,C.P.HILL REVDAT 3 20-DEC-23 2XS1 1 REMARK REVDAT 2 22-DEC-10 2XS1 1 JRNL REVDAT 1 03-NOV-10 2XS1 0 JRNL AUTH Q.ZHAI,M.LANDESMAN,H.ROBINSON,W.I.SUNDQUIST,C.P.HILL JRNL TITL IDENTIFICATION AND STRUCTURAL CHARACTERIZATION OF THE JRNL TITL 2 ALIX-BINDING LATE DOMAINS OF SIVMAC239 AND SIVAGMTAN-1. JRNL REF J.VIROL. V. 85 632 2011 JRNL REFN ISSN 0022-538X JRNL PMID 20962096 JRNL DOI 10.1128/JVI.01683-10 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.44 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 42967 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2152 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.4447 - 5.6561 0.98 2794 180 0.1826 0.2306 REMARK 3 2 5.6561 - 4.4923 1.00 2806 140 0.1778 0.2071 REMARK 3 3 4.4923 - 3.9253 1.00 2795 163 0.1690 0.2138 REMARK 3 4 3.9253 - 3.5668 1.00 2792 143 0.1866 0.2095 REMARK 3 5 3.5668 - 3.3113 1.00 2806 138 0.2202 0.2652 REMARK 3 6 3.3113 - 3.1162 1.00 2801 133 0.2287 0.3436 REMARK 3 7 3.1162 - 2.9602 1.00 2785 157 0.2269 0.2832 REMARK 3 8 2.9602 - 2.8314 1.00 2776 146 0.2312 0.2973 REMARK 3 9 2.8314 - 2.7225 1.00 2795 139 0.2315 0.2705 REMARK 3 10 2.7225 - 2.6285 1.00 2767 133 0.2238 0.3176 REMARK 3 11 2.6285 - 2.5464 1.00 2775 153 0.2231 0.2919 REMARK 3 12 2.5464 - 2.4736 0.99 2765 133 0.2285 0.2873 REMARK 3 13 2.4736 - 2.4085 0.97 2667 161 0.2347 0.2973 REMARK 3 14 2.4085 - 2.3498 0.90 2508 127 0.2344 0.3024 REMARK 3 15 2.3498 - 2.2964 0.78 2183 106 0.2601 0.3247 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.34 REMARK 3 B_SOL : 58.27 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.360 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.450 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 47.27 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 77.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -10.86660 REMARK 3 B22 (A**2) : 3.78090 REMARK 3 B33 (A**2) : 7.08560 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -15.45680 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 5700 REMARK 3 ANGLE : 0.994 7700 REMARK 3 CHIRALITY : 0.068 884 REMARK 3 PLANARITY : 0.004 1005 REMARK 3 DIHEDRAL : 18.283 2143 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 2:17) REMARK 3 ORIGIN FOR THE GROUP (A): -15.2015 -19.9200 -32.3252 REMARK 3 T TENSOR REMARK 3 T11: 0.6930 T22: 0.4031 REMARK 3 T33: 0.8669 T12: -0.0961 REMARK 3 T13: -0.1488 T23: 0.2733 REMARK 3 L TENSOR REMARK 3 L11: 0.1136 L22: 0.9796 REMARK 3 L33: 0.2600 L12: -0.0731 REMARK 3 L13: -0.0820 L23: 0.6787 REMARK 3 S TENSOR REMARK 3 S11: -0.4139 S12: -0.2341 S13: 0.6602 REMARK 3 S21: -0.2155 S22: 0.3515 S23: 1.0395 REMARK 3 S31: -0.4256 S32: -0.0308 S33: 0.0028 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 18:51) REMARK 3 ORIGIN FOR THE GROUP (A): -42.2962 -20.9554 -35.3098 REMARK 3 T TENSOR REMARK 3 T11: 0.6705 T22: 0.9833 REMARK 3 T33: 2.2425 T12: 0.1180 REMARK 3 T13: -0.5246 T23: 0.5066 REMARK 3 L TENSOR REMARK 3 L11: 0.0310 L22: -0.0350 REMARK 3 L33: -0.0769 L12: 0.1017 REMARK 3 L13: -0.0094 L23: 0.0162 REMARK 3 S TENSOR REMARK 3 S11: -0.4872 S12: 0.5016 S13: 0.9226 REMARK 3 S21: -0.0213 S22: 0.6360 S23: 1.5445 REMARK 3 S31: -0.6795 S32: -0.4450 S33: -0.0004 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 52:91) REMARK 3 ORIGIN FOR THE GROUP (A): -28.0572 -24.5247 -32.0611 REMARK 3 T TENSOR REMARK 3 T11: 0.4873 T22: 0.5634 REMARK 3 T33: 1.0709 T12: 0.0591 REMARK 3 T13: -0.1898 T23: 0.2582 REMARK 3 L TENSOR REMARK 3 L11: 0.8179 L22: 0.7211 REMARK 3 L33: 0.5987 L12: 0.3688 REMARK 3 L13: -0.3172 L23: -0.8797 REMARK 3 S TENSOR REMARK 3 S11: -0.0232 S12: 0.3253 S13: 0.7656 REMARK 3 S21: 0.1963 S22: 0.2577 S23: 0.9317 REMARK 3 S31: -0.1643 S32: -0.2894 S33: -0.0001 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 92:227) REMARK 3 ORIGIN FOR THE GROUP (A): -9.9908 -30.4815 -27.8077 REMARK 3 T TENSOR REMARK 3 T11: 0.4070 T22: 0.3775 REMARK 3 T33: 0.2560 T12: -0.0365 REMARK 3 T13: 0.0350 T23: 0.0821 REMARK 3 L TENSOR REMARK 3 L11: 4.2135 L22: 3.7037 REMARK 3 L33: 0.9479 L12: 0.1473 REMARK 3 L13: 0.6671 L23: -1.3304 REMARK 3 S TENSOR REMARK 3 S11: -0.1194 S12: 0.4346 S13: 0.2099 REMARK 3 S21: -0.5096 S22: 0.3163 S23: 0.7029 REMARK 3 S31: 0.1012 S32: 0.0126 S33: -0.0001 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 228:332) REMARK 3 ORIGIN FOR THE GROUP (A): 14.3937 -36.2995 -18.1668 REMARK 3 T TENSOR REMARK 3 T11: 0.2935 T22: 0.3801 REMARK 3 T33: 0.1090 T12: 0.0011 REMARK 3 T13: 0.1405 T23: -0.0343 REMARK 3 L TENSOR REMARK 3 L11: 4.1522 L22: 2.4253 REMARK 3 L33: 2.4268 L12: 1.5111 REMARK 3 L13: 1.6732 L23: -0.5824 REMARK 3 S TENSOR REMARK 3 S11: 0.0745 S12: 0.3006 S13: -0.1509 REMARK 3 S21: 0.0941 S22: -0.2055 S23: -0.2167 REMARK 3 S31: -0.1842 S32: 0.4591 S33: -0.0003 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 333:369) REMARK 3 ORIGIN FOR THE GROUP (A): -30.4927 -35.3065 -27.7039 REMARK 3 T TENSOR REMARK 3 T11: 0.2943 T22: 0.6058 REMARK 3 T33: 0.9553 T12: -0.0383 REMARK 3 T13: -0.0684 T23: 0.2315 REMARK 3 L TENSOR REMARK 3 L11: 0.5886 L22: 0.8869 REMARK 3 L33: 0.9344 L12: 0.7325 REMARK 3 L13: -0.1595 L23: 0.0585 REMARK 3 S TENSOR REMARK 3 S11: -0.0961 S12: -0.0773 S13: 0.6435 REMARK 3 S21: -0.2121 S22: 0.2161 S23: 0.9464 REMARK 3 S31: 0.1894 S32: -0.7120 S33: 0.0008 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 370:431) REMARK 3 ORIGIN FOR THE GROUP (A): -81.6268 -49.9685 -55.1699 REMARK 3 T TENSOR REMARK 3 T11: 0.5574 T22: 0.4353 REMARK 3 T33: 0.6303 T12: -0.1301 REMARK 3 T13: -0.1793 T23: 0.2091 REMARK 3 L TENSOR REMARK 3 L11: 1.0611 L22: 1.3383 REMARK 3 L33: 1.3924 L12: -1.0097 REMARK 3 L13: 0.2566 L23: -1.0115 REMARK 3 S TENSOR REMARK 3 S11: 0.4156 S12: -0.3287 S13: -0.2120 REMARK 3 S21: 0.1629 S22: -0.1679 S23: -0.2812 REMARK 3 S31: 0.4255 S32: -0.0274 S33: 0.0001 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 432:490) REMARK 3 ORIGIN FOR THE GROUP (A): -58.6284 -10.7852 -60.2226 REMARK 3 T TENSOR REMARK 3 T11: 0.4260 T22: 0.3594 REMARK 3 T33: 0.5615 T12: -0.0384 REMARK 3 T13: 0.0972 T23: -0.0837 REMARK 3 L TENSOR REMARK 3 L11: -0.4666 L22: 2.8802 REMARK 3 L33: 0.8156 L12: 1.0183 REMARK 3 L13: 0.7985 L23: -0.0964 REMARK 3 S TENSOR REMARK 3 S11: 0.3846 S12: 0.2704 S13: -0.7980 REMARK 3 S21: 0.4247 S22: -0.0516 S23: -0.7268 REMARK 3 S31: 0.0037 S32: 0.1684 S33: 0.0003 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN A AND RESID 491:540) REMARK 3 ORIGIN FOR THE GROUP (A): -83.9978 -37.2149 -64.2331 REMARK 3 T TENSOR REMARK 3 T11: 0.4313 T22: 0.3869 REMARK 3 T33: 0.6194 T12: -0.0826 REMARK 3 T13: -0.0355 T23: 0.1019 REMARK 3 L TENSOR REMARK 3 L11: 0.3370 L22: 1.8066 REMARK 3 L33: 0.7775 L12: 0.0144 REMARK 3 L13: 0.7055 L23: 0.1589 REMARK 3 S TENSOR REMARK 3 S11: -0.1424 S12: 0.3367 S13: 0.5060 REMARK 3 S21: -0.4099 S22: 0.4528 S23: 0.3811 REMARK 3 S31: 0.1227 S32: -0.1224 S33: 0.0000 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN A AND RESID 541:564) REMARK 3 ORIGIN FOR THE GROUP (A): -89.0573 -65.2615 -54.7131 REMARK 3 T TENSOR REMARK 3 T11: 1.0337 T22: 0.6481 REMARK 3 T33: 1.4749 T12: -0.1740 REMARK 3 T13: -0.7037 T23: 0.4720 REMARK 3 L TENSOR REMARK 3 L11: 0.4702 L22: -0.0327 REMARK 3 L33: 0.1817 L12: -0.0087 REMARK 3 L13: -0.4668 L23: 0.1341 REMARK 3 S TENSOR REMARK 3 S11: 0.3758 S12: -1.5239 S13: -0.9742 REMARK 3 S21: 0.1442 S22: 0.3937 S23: 1.2264 REMARK 3 S31: 0.5803 S32: -1.0368 S33: 0.0020 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN A AND RESID 565:647) REMARK 3 ORIGIN FOR THE GROUP (A): -67.5879 -55.5248 -49.3136 REMARK 3 T TENSOR REMARK 3 T11: 0.7341 T22: 0.4933 REMARK 3 T33: 1.0811 T12: 0.0612 REMARK 3 T13: -0.4632 T23: 0.0592 REMARK 3 L TENSOR REMARK 3 L11: 0.9511 L22: 1.0152 REMARK 3 L33: 0.4809 L12: 0.3342 REMARK 3 L13: -0.1601 L23: -0.6743 REMARK 3 S TENSOR REMARK 3 S11: 0.3263 S12: 0.0275 S13: -0.3615 REMARK 3 S21: 0.1972 S22: -0.1044 S23: -0.3002 REMARK 3 S31: 0.4655 S32: 0.1822 S33: 0.0001 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (CHAIN A AND RESID 648:698) REMARK 3 ORIGIN FOR THE GROUP (A): -73.7855 -31.2822 -56.9007 REMARK 3 T TENSOR REMARK 3 T11: 0.4483 T22: 0.3287 REMARK 3 T33: 0.5073 T12: -0.0951 REMARK 3 T13: -0.0716 T23: 0.0240 REMARK 3 L TENSOR REMARK 3 L11: 0.6250 L22: 0.9121 REMARK 3 L33: 0.8401 L12: 0.3475 REMARK 3 L13: -0.3261 L23: -1.1590 REMARK 3 S TENSOR REMARK 3 S11: 0.5995 S12: -0.3491 S13: -0.8567 REMARK 3 S21: 0.6948 S22: -0.2369 S23: -0.8040 REMARK 3 S31: 0.0581 S32: -0.0092 S33: 0.0009 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: (CHAIN B AND RESID 42:56) REMARK 3 ORIGIN FOR THE GROUP (A): -64.1404 -34.8740 -58.0938 REMARK 3 T TENSOR REMARK 3 T11: 0.7451 T22: 0.4616 REMARK 3 T33: 1.3482 T12: -0.1551 REMARK 3 T13: -0.2276 T23: 0.0757 REMARK 3 L TENSOR REMARK 3 L11: -0.0672 L22: 0.0580 REMARK 3 L33: 0.0869 L12: 0.0356 REMARK 3 L13: 0.0063 L23: -0.0546 REMARK 3 S TENSOR REMARK 3 S11: 0.5807 S12: 0.2885 S13: -0.4744 REMARK 3 S21: -0.3919 S22: -0.3178 S23: -1.2439 REMARK 3 S31: -0.0715 S32: 0.0252 S33: 0.0004 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2XS1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-SEP-10. REMARK 100 THE DEPOSITION ID IS D_1290045506. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-SEP-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.07500 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44063 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 45.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.6 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : 0.28000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: PDB ENTRY 2OEV REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 6.5% PEG4000, 0.2 MGCL2, 0.1M MES PH REMARK 280 6.2 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 72.64050 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 49.63550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 72.64050 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 49.63550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, LYS 268 TO TYR REMARK 400 ENGINEERED RESIDUE IN CHAIN A, LYS 269 TO TYR REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -5 REMARK 465 ILE A -4 REMARK 465 ASP A -3 REMARK 465 PRO A -2 REMARK 465 PHE A -1 REMARK 465 THR A 0 REMARK 465 MET A 1 REMARK 465 SER B 40 REMARK 465 ARG B 41 REMARK 465 SER B 57 REMARK 465 LEU B 58 REMARK 465 PHE B 59 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 54 -20.43 -140.09 REMARK 500 PRO A 83 47.32 -81.54 REMARK 500 ASN A 87 -0.95 78.68 REMARK 500 LEU A 111 116.86 -161.71 REMARK 500 ALA A 114 40.84 -89.06 REMARK 500 LYS A 234 91.06 170.03 REMARK 500 ILE A 318 -63.49 -106.10 REMARK 500 PRO A 526 151.17 -48.59 REMARK 500 THR A 542 -3.66 -59.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2XS8 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ALIX IN COMPLEX WITH THE SIVAGMTAN-1 AYDPARKLL REMARK 900 LATE DOMAIN REMARK 999 REMARK 999 SEQUENCE REMARK 999 GAG POLYPROTEIN FRAGMENT FROM SIV IS GENBANK ACCESSION M33262 DBREF 2XS1 A 1 698 UNP Q8WUM4 PDC6I_HUMAN 1 698 DBREF 2XS1 B 40 59 UNP Q76V78 Q76V78_SIVCZ 483 502 SEQADV 2XS1 GLY A -5 UNP Q8WUM4 EXPRESSION TAG SEQADV 2XS1 ILE A -4 UNP Q8WUM4 EXPRESSION TAG SEQADV 2XS1 ASP A -3 UNP Q8WUM4 EXPRESSION TAG SEQADV 2XS1 PRO A -2 UNP Q8WUM4 EXPRESSION TAG SEQADV 2XS1 PHE A -1 UNP Q8WUM4 EXPRESSION TAG SEQADV 2XS1 THR A 0 UNP Q8WUM4 EXPRESSION TAG SEQADV 2XS1 TYR A 268 UNP Q8WUM4 LYS 268 ENGINEERED MUTATION SEQADV 2XS1 TYR A 269 UNP Q8WUM4 LYS 269 ENGINEERED MUTATION SEQRES 1 A 704 GLY ILE ASP PRO PHE THR MET ALA THR PHE ILE SER VAL SEQRES 2 A 704 GLN LEU LYS LYS THR SER GLU VAL ASP LEU ALA LYS PRO SEQRES 3 A 704 LEU VAL LYS PHE ILE GLN GLN THR TYR PRO SER GLY GLY SEQRES 4 A 704 GLU GLU GLN ALA GLN TYR CYS ARG ALA ALA GLU GLU LEU SEQRES 5 A 704 SER LYS LEU ARG ARG ALA ALA VAL GLY ARG PRO LEU ASP SEQRES 6 A 704 LYS HIS GLU GLY ALA LEU GLU THR LEU LEU ARG TYR TYR SEQRES 7 A 704 ASP GLN ILE CYS SER ILE GLU PRO LYS PHE PRO PHE SER SEQRES 8 A 704 GLU ASN GLN ILE CYS LEU THR PHE THR TRP LYS ASP ALA SEQRES 9 A 704 PHE ASP LYS GLY SER LEU PHE GLY GLY SER VAL LYS LEU SEQRES 10 A 704 ALA LEU ALA SER LEU GLY TYR GLU LYS SER CYS VAL LEU SEQRES 11 A 704 PHE ASN CYS ALA ALA LEU ALA SER GLN ILE ALA ALA GLU SEQRES 12 A 704 GLN ASN LEU ASP ASN ASP GLU GLY LEU LYS ILE ALA ALA SEQRES 13 A 704 LYS HIS TYR GLN PHE ALA SER GLY ALA PHE LEU HIS ILE SEQRES 14 A 704 LYS GLU THR VAL LEU SER ALA LEU SER ARG GLU PRO THR SEQRES 15 A 704 VAL ASP ILE SER PRO ASP THR VAL GLY THR LEU SER LEU SEQRES 16 A 704 ILE MET LEU ALA GLN ALA GLN GLU VAL PHE PHE LEU LYS SEQRES 17 A 704 ALA THR ARG ASP LYS MET LYS ASP ALA ILE ILE ALA LYS SEQRES 18 A 704 LEU ALA ASN GLN ALA ALA ASP TYR PHE GLY ASP ALA PHE SEQRES 19 A 704 LYS GLN CYS GLN TYR LYS ASP THR LEU PRO LYS GLU VAL SEQRES 20 A 704 PHE PRO VAL LEU ALA ALA LYS HIS CYS ILE MET GLN ALA SEQRES 21 A 704 ASN ALA GLU TYR HIS GLN SER ILE LEU ALA LYS GLN GLN SEQRES 22 A 704 TYR TYR PHE GLY GLU GLU ILE ALA ARG LEU GLN HIS ALA SEQRES 23 A 704 ALA GLU LEU ILE LYS THR VAL ALA SER ARG TYR ASP GLU SEQRES 24 A 704 TYR VAL ASN VAL LYS ASP PHE SER ASP LYS ILE ASN ARG SEQRES 25 A 704 ALA LEU ALA ALA ALA LYS LYS ASP ASN ASP PHE ILE TYR SEQRES 26 A 704 HIS ASP ARG VAL PRO ASP LEU LYS ASP LEU ASP PRO ILE SEQRES 27 A 704 GLY LYS ALA THR LEU VAL LYS SER THR PRO VAL ASN VAL SEQRES 28 A 704 PRO ILE SER GLN LYS PHE THR ASP LEU PHE GLU LYS MET SEQRES 29 A 704 VAL PRO VAL SER VAL GLN GLN SER LEU ALA ALA TYR ASN SEQRES 30 A 704 GLN ARG LYS ALA ASP LEU VAL ASN ARG SER ILE ALA GLN SEQRES 31 A 704 MET ARG GLU ALA THR THR LEU ALA ASN GLY VAL LEU ALA SEQRES 32 A 704 SER LEU ASN LEU PRO ALA ALA ILE GLU ASP VAL SER GLY SEQRES 33 A 704 ASP THR VAL PRO GLN SER ILE LEU THR LYS SER ARG SER SEQRES 34 A 704 VAL ILE GLU GLN GLY GLY ILE GLN THR VAL ASP GLN LEU SEQRES 35 A 704 ILE LYS GLU LEU PRO GLU LEU LEU GLN ARG ASN ARG GLU SEQRES 36 A 704 ILE LEU ASP GLU SER LEU ARG LEU LEU ASP GLU GLU GLU SEQRES 37 A 704 ALA THR ASP ASN ASP LEU ARG ALA LYS PHE LYS GLU ARG SEQRES 38 A 704 TRP GLN ARG THR PRO SER ASN GLU LEU TYR LYS PRO LEU SEQRES 39 A 704 ARG ALA GLU GLY THR ASN PHE ARG THR VAL LEU ASP LYS SEQRES 40 A 704 ALA VAL GLN ALA ASP GLY GLN VAL LYS GLU CYS TYR GLN SEQRES 41 A 704 SER HIS ARG ASP THR ILE VAL LEU LEU CYS LYS PRO GLU SEQRES 42 A 704 PRO GLU LEU ASN ALA ALA ILE PRO SER ALA ASN PRO ALA SEQRES 43 A 704 LYS THR MET GLN GLY SER GLU VAL VAL ASN VAL LEU LYS SEQRES 44 A 704 SER LEU LEU SER ASN LEU ASP GLU VAL LYS LYS GLU ARG SEQRES 45 A 704 GLU GLY LEU GLU ASN ASP LEU LYS SER VAL ASN PHE ASP SEQRES 46 A 704 MET THR SER LYS PHE LEU THR ALA LEU ALA GLN ASP GLY SEQRES 47 A 704 VAL ILE ASN GLU GLU ALA LEU SER VAL THR GLU LEU ASP SEQRES 48 A 704 ARG VAL TYR GLY GLY LEU THR THR LYS VAL GLN GLU SER SEQRES 49 A 704 LEU LYS LYS GLN GLU GLY LEU LEU LYS ASN ILE GLN VAL SEQRES 50 A 704 SER HIS GLN GLU PHE SER LYS MET LYS GLN SER ASN ASN SEQRES 51 A 704 GLU ALA ASN LEU ARG GLU GLU VAL LEU LYS ASN LEU ALA SEQRES 52 A 704 THR ALA TYR ASP ASN PHE VAL GLU LEU VAL ALA ASN LEU SEQRES 53 A 704 LYS GLU GLY THR LYS PHE TYR ASN GLU LEU THR GLU ILE SEQRES 54 A 704 LEU VAL ARG PHE GLN ASN LYS CYS SER ASP ILE VAL PHE SEQRES 55 A 704 ALA ARG SEQRES 1 B 20 SER ARG GLU LYS PRO TYR LYS GLU VAL THR GLU ASP LEU SEQRES 2 B 20 LEU HIS LEU ASN SER LEU PHE FORMUL 3 HOH *58(H2 O) HELIX 1 1 LEU A 17 THR A 28 1 12 HELIX 2 2 GLY A 33 GLY A 55 1 23 HELIX 3 3 HIS A 61 GLU A 79 1 19 HELIX 4 4 PRO A 80 PHE A 82 5 3 HELIX 5 5 SER A 115 GLU A 137 1 23 HELIX 6 6 ASN A 142 LEU A 171 1 30 HELIX 7 7 THR A 176 ILE A 179 5 4 HELIX 8 8 SER A 180 ASP A 206 1 27 HELIX 9 9 LYS A 209 TYR A 233 1 25 HELIX 10 10 GLU A 240 GLN A 267 1 28 HELIX 11 11 TYR A 269 TYR A 291 1 23 HELIX 12 12 VAL A 297 ILE A 318 1 22 HELIX 13 13 ASP A 325 LEU A 329 5 5 HELIX 14 14 PRO A 360 LEU A 399 1 40 HELIX 15 15 PRO A 402 ASP A 407 1 6 HELIX 16 16 PRO A 414 GLN A 427 1 14 HELIX 17 17 GLY A 429 PHE A 472 1 44 HELIX 18 18 PRO A 480 SER A 515 1 36 HELIX 19 19 HIS A 516 CYS A 524 1 9 HELIX 20 20 PRO A 526 ALA A 533 1 8 HELIX 21 21 ALA A 540 GLN A 544 5 5 HELIX 22 22 SER A 546 VAL A 576 1 31 HELIX 23 23 MET A 580 ASP A 591 1 12 HELIX 24 24 ASN A 595 LYS A 640 1 46 HELIX 25 25 ASN A 643 ARG A 698 1 56 HELIX 26 26 TYR B 45 ASN B 56 1 12 SHEET 1 AA 2 PHE A 93 LYS A 96 0 SHEET 2 AA 2 LYS A 110 LEU A 113 -1 O LEU A 111 N TRP A 95 CISPEP 1 VAL A 345 PRO A 346 0 9.24 CISPEP 2 LEU A 401 PRO A 402 0 3.07 CRYST1 145.281 99.271 72.521 90.00 106.62 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006883 0.000000 0.002055 0.00000 SCALE2 0.000000 0.010073 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014390 0.00000