HEADER HYDROLASE 02-OCT-10 2XT0 TITLE DEHALOGENASE DPPA FROM PLESIOCYSTIS PACIFICA SIR-I COMPND MOL_ID: 1; COMPND 2 MOLECULE: HALOALKANE DEHALOGENASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DPPA DEHALOGENASE; COMPND 5 EC: 3.8.1.5; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLESIOCYSTIS PACIFICA; SOURCE 3 ORGANISM_TAXID: 191768; SOURCE 4 STRAIN: SIR-I; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 GOLD; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET28A KEYWDS HYDROLASE, ALPHA-BETA HYDROLASE FOLD EXPDTA X-RAY DIFFRACTION AUTHOR X.BOGDANOVIC,G.J.PALM,W.HINRICHS REVDAT 3 20-DEC-23 2XT0 1 REMARK REVDAT 2 21-SEP-11 2XT0 1 REMARK REVDAT 1 10-AUG-11 2XT0 0 JRNL AUTH M.HESSELER,X.BOGDANOVIC,A.HIDALGO,J.BERENGUER,G.J.PALM, JRNL AUTH 2 W.HINRICHS,U.T.BORNSCHEUER JRNL TITL CLONING, FUNCTIONAL EXPRESSION, BIOCHEMICAL JRNL TITL 2 CHARACTERIZATION, AND STRUCTURAL ANALYSIS OF A HALOALKANE JRNL TITL 3 DEHALOGENASE FROM PLESIOCYSTIS PACIFICA SIR-1. JRNL REF APPL.MICROBIOL.BIOTECHNOL. V. 91 1049 2011 JRNL REFN ISSN 0175-7598 JRNL PMID 21603934 JRNL DOI 10.1007/S00253-011-3328-X REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH X.BOGDANOVIC,M.HESSELER,G.J.PALM,U.T.BORNSCHEUER,W.HINRICHS REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY X-RAY DIFFRACTION STUDIES OF REMARK 1 TITL 2 THE PUTATIVE HALOALKANE DEHALOGENASE DPPA FROM PLESIOCYSTIS REMARK 1 TITL 3 PACIFICA SIR-I. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.F V. 66 828 2010 REMARK 1 REFN ESSN 1744-3091 REMARK 1 PMID 20606284 REMARK 1 DOI 10.1107/S1744309110018932 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 67.31 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 25826 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1375 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1775 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.71 REMARK 3 BIN R VALUE (WORKING SET) : 0.4560 REMARK 3 BIN FREE R VALUE SET COUNT : 84 REMARK 3 BIN FREE R VALUE : 0.5110 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2299 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 260 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.14000 REMARK 3 B22 (A**2) : -0.21000 REMARK 3 B33 (A**2) : 0.06000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.176 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.154 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.109 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.419 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.930 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2399 ; 0.023 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1649 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3271 ; 1.854 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3983 ; 1.085 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 300 ; 6.827 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 111 ;28.324 ;22.883 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 354 ;13.979 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;15.600 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 339 ; 0.118 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2712 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 519 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1487 ; 1.072 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 599 ; 0.362 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2389 ; 1.638 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 912 ; 2.729 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 880 ; 4.039 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 164 REMARK 3 ORIGIN FOR THE GROUP (A): 40.4973 18.9705 51.5628 REMARK 3 T TENSOR REMARK 3 T11: 0.0802 T22: 0.0692 REMARK 3 T33: 0.0980 T12: 0.0023 REMARK 3 T13: -0.0057 T23: 0.0037 REMARK 3 L TENSOR REMARK 3 L11: 0.9713 L22: 1.2971 REMARK 3 L33: 1.8347 L12: 0.4181 REMARK 3 L13: 0.0754 L23: -0.1812 REMARK 3 S TENSOR REMARK 3 S11: 0.0066 S12: -0.0242 S13: -0.0537 REMARK 3 S21: 0.0508 S22: -0.0321 S23: -0.0864 REMARK 3 S31: 0.0525 S32: 0.1436 S33: 0.0255 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 165 A 226 REMARK 3 ORIGIN FOR THE GROUP (A): 30.1078 22.7121 41.8150 REMARK 3 T TENSOR REMARK 3 T11: 0.1163 T22: 0.1175 REMARK 3 T33: 0.1195 T12: 0.0097 REMARK 3 T13: 0.0031 T23: 0.0023 REMARK 3 L TENSOR REMARK 3 L11: 1.0721 L22: 0.5047 REMARK 3 L33: 1.5888 L12: 0.2813 REMARK 3 L13: 0.4809 L23: -0.7106 REMARK 3 S TENSOR REMARK 3 S11: -0.0697 S12: 0.0553 S13: 0.0413 REMARK 3 S21: -0.0002 S22: 0.0559 S23: 0.0422 REMARK 3 S31: -0.0647 S32: -0.0758 S33: 0.0137 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 227 A 297 REMARK 3 ORIGIN FOR THE GROUP (A): 27.1684 12.5626 60.9103 REMARK 3 T TENSOR REMARK 3 T11: 0.1347 T22: 0.1353 REMARK 3 T33: 0.1250 T12: -0.0416 REMARK 3 T13: -0.0024 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 1.5813 L22: 3.4567 REMARK 3 L33: 1.7886 L12: -0.8090 REMARK 3 L13: -0.7912 L23: 0.8611 REMARK 3 S TENSOR REMARK 3 S11: 0.0694 S12: -0.0886 S13: -0.2179 REMARK 3 S21: 0.1952 S22: -0.1376 S23: 0.3050 REMARK 3 S31: 0.1590 S32: -0.1369 S33: 0.0683 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES WITH TLS ADDED. THE NUMBER OF UNIQUE REMARK 3 REFLECTIONS FOR REFINEMENT IS 25826 AND FOR DATA PROCESSING REMARK 3 25613. THIS IS DUE TO A DIFFERENT RESOLUTION USED FOR REFINEMENT REMARK 3 (1.9 A) AND PROCESSING (1.95 A). REMARK 4 REMARK 4 2XT0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-OCT-10. REMARK 100 THE DEPOSITION ID IS D_1290045648. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-MAY-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : OSMIC MULTILAYER OPTIC REMARK 200 OPTICS : OSMIC MULTILAYER OPTIC REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 92 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTALCLEAR V.1.3.6 REMARK 200 DATA SCALING SOFTWARE : CRYSTALCLEAR V.1.3.6 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25613 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 38.680 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : 0.12000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.44000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1EDB REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES PH 6.5, 1.8M (NH4)2SO4, 5% REMARK 280 PEG400 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 23.63100 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.25050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.63100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 54.25050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -114.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 47.26200 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2161 O HOH A 2242 1.97 REMARK 500 O HOH A 2236 O HOH A 2240 2.01 REMARK 500 O HOH A 2088 O HOH A 2186 2.03 REMARK 500 NH2 ARG A 209 O HOH A 2206 2.14 REMARK 500 O HOH A 2038 O HOH A 2087 2.16 REMARK 500 O HOH A 2144 O HOH A 2160 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ALA A 94 CA ALA A 94 CB 0.144 REMARK 500 GLU A 255 CB GLU A 255 CG 0.125 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 66 CA - CB - CG ANGL. DEV. = 17.4 DEGREES REMARK 500 ARG A 227 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG A 227 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 56 63.88 -108.41 REMARK 500 SER A 57 -167.87 -108.78 REMARK 500 ASP A 123 -132.89 43.55 REMARK 500 ASN A 147 102.58 -25.13 REMARK 500 LEU A 173 118.86 -37.37 REMARK 500 VAL A 251 -68.14 -127.23 REMARK 500 LEU A 252 41.29 -103.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 13 LEU A 14 -144.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1298 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1299 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1301 DBREF 2XT0 A 1 297 UNP A6G7B1 A6G7B1_9DELT 1 297 SEQADV 2XT0 ARG A 265 UNP A6G7B1 GLY 265 CLONING ARTIFACT SEQRES 1 A 297 MET GLU PHE VAL ARG THR PRO ASP ASP ARG PHE ALA ASP SEQRES 2 A 297 LEU PRO ASP PHE PRO TYR ALA PRO HIS TYR LEU GLU GLY SEQRES 3 A 297 LEU PRO GLY PHE GLU GLY LEU ARG MET HIS TYR VAL ASP SEQRES 4 A 297 GLU GLY PRO ARG ASP ALA GLU HIS THR PHE LEU CYS LEU SEQRES 5 A 297 HIS GLY GLU PRO SER TRP SER PHE LEU TYR ARG LYS MET SEQRES 6 A 297 LEU PRO VAL PHE THR ALA ALA GLY GLY ARG VAL VAL ALA SEQRES 7 A 297 PRO ASP LEU PHE GLY PHE GLY ARG SER ASP LYS PRO THR SEQRES 8 A 297 ASP ASP ALA VAL TYR THR PHE GLY PHE HIS ARG ARG SER SEQRES 9 A 297 LEU LEU ALA PHE LEU ASP ALA LEU GLN LEU GLU ARG VAL SEQRES 10 A 297 THR LEU VAL CYS GLN ASP TRP GLY GLY ILE LEU GLY LEU SEQRES 11 A 297 THR LEU PRO VAL ASP ARG PRO GLN LEU VAL ASP ARG LEU SEQRES 12 A 297 ILE VAL MET ASN THR ALA LEU ALA VAL GLY LEU SER PRO SEQRES 13 A 297 GLY LYS GLY PHE GLU SER TRP ARG ASP PHE VAL ALA ASN SEQRES 14 A 297 SER PRO ASP LEU ASP VAL GLY LYS LEU MET GLN ARG ALA SEQRES 15 A 297 ILE PRO GLY ILE THR ASP ALA GLU VAL ALA ALA TYR ASP SEQRES 16 A 297 ALA PRO PHE PRO GLY PRO GLU PHE LYS ALA GLY VAL ARG SEQRES 17 A 297 ARG PHE PRO ALA ILE VAL PRO ILE THR PRO ASP MET GLU SEQRES 18 A 297 GLY ALA GLU ILE GLY ARG GLN ALA MET SER PHE TRP SER SEQRES 19 A 297 THR GLN TRP SER GLY PRO THR PHE MET ALA VAL GLY ALA SEQRES 20 A 297 GLN ASP PRO VAL LEU GLY PRO GLU VAL MET GLY MET LEU SEQRES 21 A 297 ARG GLN ALA ILE ARG GLY CYS PRO GLU PRO MET ILE VAL SEQRES 22 A 297 GLU ALA GLY GLY HIS PHE VAL GLN GLU HIS GLY GLU PRO SEQRES 23 A 297 ILE ALA ARG ALA ALA LEU ALA ALA PHE GLY GLN HET SO4 A1298 5 HET SO4 A1299 5 HET SO4 A1300 5 HET SO4 A1301 5 HETNAM SO4 SULFATE ION FORMUL 2 SO4 4(O4 S 2-) FORMUL 6 HOH *260(H2 O) HELIX 1 1 PRO A 7 ALA A 12 5 6 HELIX 2 2 TRP A 58 ARG A 63 5 6 HELIX 3 3 MET A 65 ALA A 72 1 8 HELIX 4 4 ASP A 92 TYR A 96 5 5 HELIX 5 5 THR A 97 GLN A 113 1 17 HELIX 6 6 GLN A 122 LEU A 130 1 9 HELIX 7 7 THR A 131 ARG A 136 1 6 HELIX 8 8 GLY A 157 ASN A 169 1 13 HELIX 9 9 ASP A 174 ILE A 183 1 10 HELIX 10 10 THR A 187 ALA A 196 1 10 HELIX 11 11 GLY A 200 PHE A 203 5 4 HELIX 12 12 LYS A 204 PHE A 210 1 7 HELIX 13 13 PRO A 211 VAL A 214 5 4 HELIX 14 14 GLY A 222 GLN A 236 1 15 HELIX 15 15 GLY A 253 ILE A 264 1 12 HELIX 16 16 PHE A 279 HIS A 283 5 5 HELIX 17 17 GLY A 284 PHE A 295 1 12 SHEET 1 AA 2 PHE A 3 VAL A 4 0 SHEET 2 AA 2 LYS A 89 PRO A 90 -1 O LYS A 89 N VAL A 4 SHEET 1 AB 8 HIS A 22 LEU A 24 0 SHEET 2 AB 8 MET A 35 GLU A 40 -1 O MET A 35 N LEU A 24 SHEET 3 AB 8 ARG A 75 PRO A 79 -1 O VAL A 76 N GLU A 40 SHEET 4 AB 8 THR A 48 LEU A 52 1 O PHE A 49 N VAL A 77 SHEET 5 AB 8 VAL A 117 CYS A 121 1 O THR A 118 N LEU A 50 SHEET 6 AB 8 VAL A 140 MET A 146 1 N ASP A 141 O VAL A 117 SHEET 7 AB 8 THR A 241 GLY A 246 1 O PHE A 242 N VAL A 145 SHEET 8 AB 8 MET A 271 VAL A 273 1 O MET A 271 N VAL A 245 CISPEP 1 GLU A 55 PRO A 56 0 -12.08 SITE 1 AC1 6 GLU A 221 GLY A 222 ALA A 223 GLU A 224 SITE 2 AC1 6 ILE A 225 HOH A2257 SITE 1 AC2 4 HIS A 22 ARG A 43 ARG A 289 HOH A2258 SITE 1 AC3 3 ARG A 10 ASP A 195 HOH A2259 SITE 1 AC4 5 GLN A 262 ILE A 264 ARG A 265 GLY A 266 SITE 2 AC4 5 HOH A2260 CRYST1 47.262 108.501 67.312 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021159 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009217 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014856 0.00000