data_2XTB # _entry.id 2XTB # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2XTB PDBE EBI-45667 WWPDB D_1290045667 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2XTB _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2010-10-05 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kuettel, S.' 1 'Greenwald, J.' 2 'Kostrewa, D.' 3 'Ahmed, S.' 4 'Scapozza, L.' 5 'Perozzo, R.' 6 # _citation.id primary _citation.title ;Crystal Structures of T. B. Rhodesiense Adenosine Kinase Complexed with Inhibitor and Activator: Implications for Catalysis and Hyperactivation. ; _citation.journal_abbrev 'Plos Negl Trop Dis' _citation.journal_volume 5 _citation.page_first E1164 _citation.page_last ? _citation.year 2011 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1935-2727 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21629723 _citation.pdbx_database_id_DOI 10.1371/JOURNAL.PNTD.0001164 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Kuettel, S.' 1 primary 'Greenwald, J.' 2 primary 'Kostrewa, D.' 3 primary 'Ahmed, S.' 4 primary 'Scapozza, L.' 5 primary 'Perozzo, R.' 6 # _cell.entry_id 2XTB _cell.length_a 61.240 _cell.length_b 61.240 _cell.length_c 193.850 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2XTB _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'ADENOSINE KINASE' 38131.480 1 2.7.1.20 ? ? ? 2 non-polymer syn '4-[5-(4-PHENOXYPHENYL)-1H-PYRAZOL-3-YL]MORPHOLINE' 321.373 1 ? ? ? ? 3 water nat water 18.015 24 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSMASAPLRVYVQCNPLLDVSAHVSDEFLVKYGLERGTAILLSERQKGIFDDIEKMPNVRYVPGGSGLNVARVAQWMQQA YKGKFVTYVGCIADDRYGKVLKEAAEHEGIVMAVEHTTKAGSGACAVCITGKERTLVADLGAANHLSSEHMRSPAVVRAM DESRIFYFSGFTLTVDVNHVLQACRKAREVDGLFMINLSAPFIMQFFSAQLGEVLPYTDIIVANRHEAKEFANMMKWDTD CVEEIARRAVSEVPYTGTKGRVVVFTRDIESTVLATKDGVETVPVPQLDQDKVIDMNGAGDAFMGGFLSAYAVGKDLRRC CETGHYTAQEVIQRDGCSFPEKPSFSP ; _entity_poly.pdbx_seq_one_letter_code_can ;GSMASAPLRVYVQCNPLLDVSAHVSDEFLVKYGLERGTAILLSERQKGIFDDIEKMPNVRYVPGGSGLNVARVAQWMQQA YKGKFVTYVGCIADDRYGKVLKEAAEHEGIVMAVEHTTKAGSGACAVCITGKERTLVADLGAANHLSSEHMRSPAVVRAM DESRIFYFSGFTLTVDVNHVLQACRKAREVDGLFMINLSAPFIMQFFSAQLGEVLPYTDIIVANRHEAKEFANMMKWDTD CVEEIARRAVSEVPYTGTKGRVVVFTRDIESTVLATKDGVETVPVPQLDQDKVIDMNGAGDAFMGGFLSAYAVGKDLRRC CETGHYTAQEVIQRDGCSFPEKPSFSP ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 MET n 1 4 ALA n 1 5 SER n 1 6 ALA n 1 7 PRO n 1 8 LEU n 1 9 ARG n 1 10 VAL n 1 11 TYR n 1 12 VAL n 1 13 GLN n 1 14 CYS n 1 15 ASN n 1 16 PRO n 1 17 LEU n 1 18 LEU n 1 19 ASP n 1 20 VAL n 1 21 SER n 1 22 ALA n 1 23 HIS n 1 24 VAL n 1 25 SER n 1 26 ASP n 1 27 GLU n 1 28 PHE n 1 29 LEU n 1 30 VAL n 1 31 LYS n 1 32 TYR n 1 33 GLY n 1 34 LEU n 1 35 GLU n 1 36 ARG n 1 37 GLY n 1 38 THR n 1 39 ALA n 1 40 ILE n 1 41 LEU n 1 42 LEU n 1 43 SER n 1 44 GLU n 1 45 ARG n 1 46 GLN n 1 47 LYS n 1 48 GLY n 1 49 ILE n 1 50 PHE n 1 51 ASP n 1 52 ASP n 1 53 ILE n 1 54 GLU n 1 55 LYS n 1 56 MET n 1 57 PRO n 1 58 ASN n 1 59 VAL n 1 60 ARG n 1 61 TYR n 1 62 VAL n 1 63 PRO n 1 64 GLY n 1 65 GLY n 1 66 SER n 1 67 GLY n 1 68 LEU n 1 69 ASN n 1 70 VAL n 1 71 ALA n 1 72 ARG n 1 73 VAL n 1 74 ALA n 1 75 GLN n 1 76 TRP n 1 77 MET n 1 78 GLN n 1 79 GLN n 1 80 ALA n 1 81 TYR n 1 82 LYS n 1 83 GLY n 1 84 LYS n 1 85 PHE n 1 86 VAL n 1 87 THR n 1 88 TYR n 1 89 VAL n 1 90 GLY n 1 91 CYS n 1 92 ILE n 1 93 ALA n 1 94 ASP n 1 95 ASP n 1 96 ARG n 1 97 TYR n 1 98 GLY n 1 99 LYS n 1 100 VAL n 1 101 LEU n 1 102 LYS n 1 103 GLU n 1 104 ALA n 1 105 ALA n 1 106 GLU n 1 107 HIS n 1 108 GLU n 1 109 GLY n 1 110 ILE n 1 111 VAL n 1 112 MET n 1 113 ALA n 1 114 VAL n 1 115 GLU n 1 116 HIS n 1 117 THR n 1 118 THR n 1 119 LYS n 1 120 ALA n 1 121 GLY n 1 122 SER n 1 123 GLY n 1 124 ALA n 1 125 CYS n 1 126 ALA n 1 127 VAL n 1 128 CYS n 1 129 ILE n 1 130 THR n 1 131 GLY n 1 132 LYS n 1 133 GLU n 1 134 ARG n 1 135 THR n 1 136 LEU n 1 137 VAL n 1 138 ALA n 1 139 ASP n 1 140 LEU n 1 141 GLY n 1 142 ALA n 1 143 ALA n 1 144 ASN n 1 145 HIS n 1 146 LEU n 1 147 SER n 1 148 SER n 1 149 GLU n 1 150 HIS n 1 151 MET n 1 152 ARG n 1 153 SER n 1 154 PRO n 1 155 ALA n 1 156 VAL n 1 157 VAL n 1 158 ARG n 1 159 ALA n 1 160 MET n 1 161 ASP n 1 162 GLU n 1 163 SER n 1 164 ARG n 1 165 ILE n 1 166 PHE n 1 167 TYR n 1 168 PHE n 1 169 SER n 1 170 GLY n 1 171 PHE n 1 172 THR n 1 173 LEU n 1 174 THR n 1 175 VAL n 1 176 ASP n 1 177 VAL n 1 178 ASN n 1 179 HIS n 1 180 VAL n 1 181 LEU n 1 182 GLN n 1 183 ALA n 1 184 CYS n 1 185 ARG n 1 186 LYS n 1 187 ALA n 1 188 ARG n 1 189 GLU n 1 190 VAL n 1 191 ASP n 1 192 GLY n 1 193 LEU n 1 194 PHE n 1 195 MET n 1 196 ILE n 1 197 ASN n 1 198 LEU n 1 199 SER n 1 200 ALA n 1 201 PRO n 1 202 PHE n 1 203 ILE n 1 204 MET n 1 205 GLN n 1 206 PHE n 1 207 PHE n 1 208 SER n 1 209 ALA n 1 210 GLN n 1 211 LEU n 1 212 GLY n 1 213 GLU n 1 214 VAL n 1 215 LEU n 1 216 PRO n 1 217 TYR n 1 218 THR n 1 219 ASP n 1 220 ILE n 1 221 ILE n 1 222 VAL n 1 223 ALA n 1 224 ASN n 1 225 ARG n 1 226 HIS n 1 227 GLU n 1 228 ALA n 1 229 LYS n 1 230 GLU n 1 231 PHE n 1 232 ALA n 1 233 ASN n 1 234 MET n 1 235 MET n 1 236 LYS n 1 237 TRP n 1 238 ASP n 1 239 THR n 1 240 ASP n 1 241 CYS n 1 242 VAL n 1 243 GLU n 1 244 GLU n 1 245 ILE n 1 246 ALA n 1 247 ARG n 1 248 ARG n 1 249 ALA n 1 250 VAL n 1 251 SER n 1 252 GLU n 1 253 VAL n 1 254 PRO n 1 255 TYR n 1 256 THR n 1 257 GLY n 1 258 THR n 1 259 LYS n 1 260 GLY n 1 261 ARG n 1 262 VAL n 1 263 VAL n 1 264 VAL n 1 265 PHE n 1 266 THR n 1 267 ARG n 1 268 ASP n 1 269 ILE n 1 270 GLU n 1 271 SER n 1 272 THR n 1 273 VAL n 1 274 LEU n 1 275 ALA n 1 276 THR n 1 277 LYS n 1 278 ASP n 1 279 GLY n 1 280 VAL n 1 281 GLU n 1 282 THR n 1 283 VAL n 1 284 PRO n 1 285 VAL n 1 286 PRO n 1 287 GLN n 1 288 LEU n 1 289 ASP n 1 290 GLN n 1 291 ASP n 1 292 LYS n 1 293 VAL n 1 294 ILE n 1 295 ASP n 1 296 MET n 1 297 ASN n 1 298 GLY n 1 299 ALA n 1 300 GLY n 1 301 ASP n 1 302 ALA n 1 303 PHE n 1 304 MET n 1 305 GLY n 1 306 GLY n 1 307 PHE n 1 308 LEU n 1 309 SER n 1 310 ALA n 1 311 TYR n 1 312 ALA n 1 313 VAL n 1 314 GLY n 1 315 LYS n 1 316 ASP n 1 317 LEU n 1 318 ARG n 1 319 ARG n 1 320 CYS n 1 321 CYS n 1 322 GLU n 1 323 THR n 1 324 GLY n 1 325 HIS n 1 326 TYR n 1 327 THR n 1 328 ALA n 1 329 GLN n 1 330 GLU n 1 331 VAL n 1 332 ILE n 1 333 GLN n 1 334 ARG n 1 335 ASP n 1 336 GLY n 1 337 CYS n 1 338 SER n 1 339 PHE n 1 340 PRO n 1 341 GLU n 1 342 LYS n 1 343 PRO n 1 344 SER n 1 345 PHE n 1 346 SER n 1 347 PRO n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'TRYPANOSOMA BRUCEI RHODESIENSE' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 31286 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q584S0_9TRYP _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession Q584S0 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2XTB _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 3 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 347 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q584S0 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 345 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 345 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2XTB GLY A 1 ? UNP Q584S0 ? ? 'expression tag' -1 1 1 2XTB SER A 2 ? UNP Q584S0 ? ? 'expression tag' 0 2 1 2XTB ALA A 4 ? UNP Q584S0 SER 2 'SEE REMARK 999' 2 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 KRM non-polymer . '4-[5-(4-PHENOXYPHENYL)-1H-PYRAZOL-3-YL]MORPHOLINE' ? 'C19 H19 N3 O2' 321.373 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2XTB _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.4 _exptl_crystal.density_percent_sol 48 _exptl_crystal.description NONE # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SLS BEAMLINE X06SA' _diffrn_source.pdbx_synchrotron_site SLS _diffrn_source.pdbx_synchrotron_beamline X06SA _diffrn_source.pdbx_wavelength 1.0000 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2XTB _reflns.observed_criterion_sigma_I -10.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 58.00 _reflns.d_resolution_high 2.80 _reflns.number_obs 9747 _reflns.number_all ? _reflns.percent_possible_obs 98.0 _reflns.pdbx_Rmerge_I_obs 0.20 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 3.60 _reflns.B_iso_Wilson_estimate 47.2 _reflns.pdbx_redundancy 3.2 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.80 _reflns_shell.d_res_low 2.95 _reflns_shell.percent_possible_all 98.0 _reflns_shell.Rmerge_I_obs 0.48 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 1.80 _reflns_shell.pdbx_redundancy 3.3 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2XTB _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 9034 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 58.42 _refine.ls_d_res_high 2.80 _refine.ls_percent_reflns_obs 97.21 _refine.ls_R_factor_obs 0.23453 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.23158 _refine.ls_R_factor_R_free 0.29646 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.7 _refine.ls_number_reflns_R_free 441 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.895 _refine.correlation_coeff_Fo_to_Fc_free 0.824 _refine.B_iso_mean 32.347 _refine.aniso_B[1][1] -0.13 _refine.aniso_B[2][2] -0.13 _refine.aniso_B[3][3] 0.25 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free 0.461 _refine.overall_SU_ML 0.349 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 18.003 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2600 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 24 _refine_hist.number_atoms_solvent 24 _refine_hist.number_atoms_total 2648 _refine_hist.d_res_high 2.80 _refine_hist.d_res_low 58.42 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.006 0.022 ? 2674 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 0.969 1.962 ? 3613 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 4.806 5.000 ? 335 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 33.629 23.613 ? 119 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 15.181 15.000 ? 452 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 12.332 15.000 ? 20 'X-RAY DIFFRACTION' ? r_chiral_restr 0.060 0.200 ? 403 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.002 0.020 ? 2023 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.172 0.200 ? 1266 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.299 0.200 ? 1834 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.126 0.200 ? 106 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.149 0.200 ? 48 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.057 0.200 ? 5 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.276 1.500 ? 1710 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 0.496 2.000 ? 2681 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 0.456 3.000 ? 1076 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 0.789 4.500 ? 932 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.800 _refine_ls_shell.d_res_low 2.873 _refine_ls_shell.number_reflns_R_work 635 _refine_ls_shell.R_factor_R_work 0.308 _refine_ls_shell.percent_reflns_obs 97.38 _refine_ls_shell.R_factor_R_free 0.358 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 34 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 2XTB _struct.title 'Crystal Structure of Trypanosoma brucei rhodesiense Adenosine Kinase Complexed with Activator' _struct.pdbx_descriptor 'ADENOSINE KINASE (E.C.2.7.1.20)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2XTB _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text TRANSFERASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 25 ? TYR A 32 ? SER A 23 TYR A 30 1 ? 8 HELX_P HELX_P2 2 SER A 43 ? LYS A 47 ? SER A 41 LYS A 45 5 ? 5 HELX_P HELX_P3 3 GLY A 48 ? GLU A 54 ? GLY A 46 GLU A 52 1 ? 7 HELX_P HELX_P4 4 GLY A 65 ? GLN A 78 ? GLY A 63 GLN A 76 1 ? 14 HELX_P HELX_P5 5 GLN A 79 ? LYS A 82 ? GLN A 77 LYS A 80 5 ? 4 HELX_P HELX_P6 6 ASP A 95 ? HIS A 107 ? ASP A 93 HIS A 105 1 ? 13 HELX_P HELX_P7 7 LEU A 140 ? LEU A 146 ? LEU A 138 LEU A 144 5 ? 7 HELX_P HELX_P8 8 SER A 147 ? SER A 153 ? SER A 145 SER A 151 1 ? 7 HELX_P HELX_P9 9 SER A 153 ? GLU A 162 ? SER A 151 GLU A 160 1 ? 10 HELX_P HELX_P10 10 PHE A 171 ? ASP A 176 ? PHE A 169 ASP A 174 1 ? 6 HELX_P HELX_P11 11 ASP A 176 ? VAL A 190 ? ASP A 174 VAL A 188 1 ? 15 HELX_P HELX_P12 12 ALA A 200 ? PHE A 207 ? ALA A 198 PHE A 205 1 ? 8 HELX_P HELX_P13 13 PHE A 207 ? LEU A 215 ? PHE A 205 LEU A 213 1 ? 9 HELX_P HELX_P14 14 PRO A 216 ? THR A 218 ? PRO A 214 THR A 216 5 ? 3 HELX_P HELX_P15 15 ARG A 225 ? LYS A 236 ? ARG A 223 LYS A 234 1 ? 12 HELX_P HELX_P16 16 CYS A 241 ? GLU A 252 ? CYS A 239 GLU A 250 1 ? 12 HELX_P HELX_P17 17 GLY A 298 ? VAL A 313 ? GLY A 296 VAL A 311 1 ? 16 HELX_P HELX_P18 18 ASP A 316 ? GLN A 333 ? ASP A 314 GLN A 331 1 ? 18 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 9 ? AB ? 5 ? AC ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? parallel AA 2 3 ? parallel AA 3 4 ? parallel AA 4 5 ? parallel AA 5 6 ? parallel AA 6 7 ? parallel AA 7 8 ? anti-parallel AA 8 9 ? anti-parallel AB 1 2 ? parallel AB 2 3 ? anti-parallel AB 3 4 ? parallel AB 4 5 ? anti-parallel AC 1 2 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 VAL A 111 ? MET A 112 ? VAL A 109 MET A 110 AA 2 VAL A 86 ? VAL A 89 ? VAL A 84 VAL A 87 AA 3 VAL A 10 ? GLN A 13 ? VAL A 8 GLN A 11 AA 4 ILE A 165 ? SER A 169 ? ILE A 163 SER A 167 AA 5 LEU A 193 ? ASN A 197 ? LEU A 191 ASN A 195 AA 6 ILE A 220 ? ASN A 224 ? ILE A 218 ASN A 222 AA 7 VAL A 262 ? ARG A 267 ? VAL A 260 ARG A 265 AA 8 GLU A 270 ? THR A 276 ? GLU A 268 THR A 274 AA 9 GLY A 279 ? VAL A 283 ? GLY A 277 VAL A 281 AB 1 ALA A 39 ? LEU A 41 ? ALA A 37 LEU A 39 AB 2 GLU A 133 ? ASP A 139 ? GLU A 131 ASP A 137 AB 3 ALA A 124 ? THR A 130 ? ALA A 122 THR A 128 AB 4 LEU A 17 ? HIS A 23 ? LEU A 15 HIS A 21 AB 5 ARG A 60 ? GLY A 64 ? ARG A 58 GLY A 62 AC 1 CYS A 91 ? ALA A 93 ? CYS A 89 ALA A 91 AC 2 GLU A 115 ? THR A 117 ? GLU A 113 THR A 115 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N VAL A 111 ? N VAL A 109 O VAL A 86 ? O VAL A 84 AA 2 3 N THR A 87 ? N THR A 85 O VAL A 10 ? O VAL A 8 AA 3 4 N TYR A 11 ? N TYR A 9 O ILE A 165 ? O ILE A 163 AA 4 5 N PHE A 166 ? N PHE A 164 O LEU A 193 ? O LEU A 191 AA 5 6 N ILE A 196 ? N ILE A 194 O ILE A 220 ? O ILE A 218 AA 6 7 N ILE A 221 ? N ILE A 219 O VAL A 262 ? O VAL A 260 AA 7 8 N ARG A 267 ? N ARG A 265 O GLU A 270 ? O GLU A 268 AA 8 9 N THR A 276 ? N THR A 274 O GLY A 279 ? O GLY A 277 AB 1 2 N ILE A 40 ? N ILE A 38 O LEU A 136 ? O LEU A 134 AB 2 3 N ASP A 139 ? N ASP A 137 O ALA A 124 ? O ALA A 122 AB 3 4 N CYS A 125 ? N CYS A 123 O LEU A 18 ? O LEU A 16 AB 4 5 N SER A 21 ? N SER A 19 O ARG A 60 ? O ARG A 58 AC 1 2 N ILE A 92 ? N ILE A 90 O GLU A 115 ? O GLU A 113 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 6 _struct_site.details 'BINDING SITE FOR RESIDUE KRM A 1344' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 ASN A 15 ? ASN A 13 . ? 1_555 ? 2 AC1 6 GLY A 65 ? GLY A 63 . ? 1_555 ? 3 AC1 6 SER A 66 ? SER A 64 . ? 1_555 ? 4 AC1 6 PHE A 171 ? PHE A 169 . ? 1_555 ? 5 AC1 6 PHE A 202 ? PHE A 200 . ? 1_555 ? 6 AC1 6 HOH C . ? HOH A 2017 . ? 1_555 ? # _database_PDB_matrix.entry_id 2XTB _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2XTB _atom_sites.fract_transf_matrix[1][1] 0.016329 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016329 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.005159 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -1 ? ? ? A . n A 1 2 SER 2 0 0 SER SER A . n A 1 3 MET 3 1 1 MET MET A . n A 1 4 ALA 4 2 2 ALA ALA A . n A 1 5 SER 5 3 3 SER SER A . n A 1 6 ALA 6 4 4 ALA ALA A . n A 1 7 PRO 7 5 5 PRO PRO A . n A 1 8 LEU 8 6 6 LEU LEU A . n A 1 9 ARG 9 7 7 ARG ARG A . n A 1 10 VAL 10 8 8 VAL VAL A . n A 1 11 TYR 11 9 9 TYR TYR A . n A 1 12 VAL 12 10 10 VAL VAL A . n A 1 13 GLN 13 11 11 GLN GLN A . n A 1 14 CYS 14 12 12 CYS CYS A . n A 1 15 ASN 15 13 13 ASN ASN A . n A 1 16 PRO 16 14 14 PRO PRO A . n A 1 17 LEU 17 15 15 LEU LEU A . n A 1 18 LEU 18 16 16 LEU LEU A . n A 1 19 ASP 19 17 17 ASP ASP A . n A 1 20 VAL 20 18 18 VAL VAL A . n A 1 21 SER 21 19 19 SER SER A . n A 1 22 ALA 22 20 20 ALA ALA A . n A 1 23 HIS 23 21 21 HIS HIS A . n A 1 24 VAL 24 22 22 VAL VAL A . n A 1 25 SER 25 23 23 SER SER A . n A 1 26 ASP 26 24 24 ASP ASP A . n A 1 27 GLU 27 25 25 GLU GLU A . n A 1 28 PHE 28 26 26 PHE PHE A . n A 1 29 LEU 29 27 27 LEU LEU A . n A 1 30 VAL 30 28 28 VAL VAL A . n A 1 31 LYS 31 29 29 LYS LYS A . n A 1 32 TYR 32 30 30 TYR TYR A . n A 1 33 GLY 33 31 31 GLY GLY A . n A 1 34 LEU 34 32 32 LEU LEU A . n A 1 35 GLU 35 33 33 GLU GLU A . n A 1 36 ARG 36 34 34 ARG ARG A . n A 1 37 GLY 37 35 35 GLY GLY A . n A 1 38 THR 38 36 36 THR THR A . n A 1 39 ALA 39 37 37 ALA ALA A . n A 1 40 ILE 40 38 38 ILE ILE A . n A 1 41 LEU 41 39 39 LEU LEU A . n A 1 42 LEU 42 40 40 LEU LEU A . n A 1 43 SER 43 41 41 SER SER A . n A 1 44 GLU 44 42 42 GLU GLU A . n A 1 45 ARG 45 43 43 ARG ARG A . n A 1 46 GLN 46 44 44 GLN GLN A . n A 1 47 LYS 47 45 45 LYS LYS A . n A 1 48 GLY 48 46 46 GLY GLY A . n A 1 49 ILE 49 47 47 ILE ILE A . n A 1 50 PHE 50 48 48 PHE PHE A . n A 1 51 ASP 51 49 49 ASP ASP A . n A 1 52 ASP 52 50 50 ASP ASP A . n A 1 53 ILE 53 51 51 ILE ILE A . n A 1 54 GLU 54 52 52 GLU GLU A . n A 1 55 LYS 55 53 53 LYS LYS A . n A 1 56 MET 56 54 54 MET MET A . n A 1 57 PRO 57 55 55 PRO PRO A . n A 1 58 ASN 58 56 56 ASN ASN A . n A 1 59 VAL 59 57 57 VAL VAL A . n A 1 60 ARG 60 58 58 ARG ARG A . n A 1 61 TYR 61 59 59 TYR TYR A . n A 1 62 VAL 62 60 60 VAL VAL A . n A 1 63 PRO 63 61 61 PRO PRO A . n A 1 64 GLY 64 62 62 GLY GLY A . n A 1 65 GLY 65 63 63 GLY GLY A . n A 1 66 SER 66 64 64 SER SER A . n A 1 67 GLY 67 65 65 GLY GLY A . n A 1 68 LEU 68 66 66 LEU LEU A . n A 1 69 ASN 69 67 67 ASN ASN A . n A 1 70 VAL 70 68 68 VAL VAL A . n A 1 71 ALA 71 69 69 ALA ALA A . n A 1 72 ARG 72 70 70 ARG ARG A . n A 1 73 VAL 73 71 71 VAL VAL A . n A 1 74 ALA 74 72 72 ALA ALA A . n A 1 75 GLN 75 73 73 GLN GLN A . n A 1 76 TRP 76 74 74 TRP TRP A . n A 1 77 MET 77 75 75 MET MET A . n A 1 78 GLN 78 76 76 GLN GLN A . n A 1 79 GLN 79 77 77 GLN GLN A . n A 1 80 ALA 80 78 78 ALA ALA A . n A 1 81 TYR 81 79 79 TYR TYR A . n A 1 82 LYS 82 80 80 LYS LYS A . n A 1 83 GLY 83 81 81 GLY GLY A . n A 1 84 LYS 84 82 82 LYS LYS A . n A 1 85 PHE 85 83 83 PHE PHE A . n A 1 86 VAL 86 84 84 VAL VAL A . n A 1 87 THR 87 85 85 THR THR A . n A 1 88 TYR 88 86 86 TYR TYR A . n A 1 89 VAL 89 87 87 VAL VAL A . n A 1 90 GLY 90 88 88 GLY GLY A . n A 1 91 CYS 91 89 89 CYS CYS A . n A 1 92 ILE 92 90 90 ILE ILE A . n A 1 93 ALA 93 91 91 ALA ALA A . n A 1 94 ASP 94 92 92 ASP ASP A . n A 1 95 ASP 95 93 93 ASP ASP A . n A 1 96 ARG 96 94 94 ARG ARG A . n A 1 97 TYR 97 95 95 TYR TYR A . n A 1 98 GLY 98 96 96 GLY GLY A . n A 1 99 LYS 99 97 97 LYS LYS A . n A 1 100 VAL 100 98 98 VAL VAL A . n A 1 101 LEU 101 99 99 LEU LEU A . n A 1 102 LYS 102 100 100 LYS LYS A . n A 1 103 GLU 103 101 101 GLU GLU A . n A 1 104 ALA 104 102 102 ALA ALA A . n A 1 105 ALA 105 103 103 ALA ALA A . n A 1 106 GLU 106 104 104 GLU GLU A . n A 1 107 HIS 107 105 105 HIS HIS A . n A 1 108 GLU 108 106 106 GLU GLU A . n A 1 109 GLY 109 107 107 GLY GLY A . n A 1 110 ILE 110 108 108 ILE ILE A . n A 1 111 VAL 111 109 109 VAL VAL A . n A 1 112 MET 112 110 110 MET MET A . n A 1 113 ALA 113 111 111 ALA ALA A . n A 1 114 VAL 114 112 112 VAL VAL A . n A 1 115 GLU 115 113 113 GLU GLU A . n A 1 116 HIS 116 114 114 HIS HIS A . n A 1 117 THR 117 115 115 THR THR A . n A 1 118 THR 118 116 116 THR THR A . n A 1 119 LYS 119 117 117 LYS LYS A . n A 1 120 ALA 120 118 118 ALA ALA A . n A 1 121 GLY 121 119 119 GLY GLY A . n A 1 122 SER 122 120 120 SER SER A . n A 1 123 GLY 123 121 121 GLY GLY A . n A 1 124 ALA 124 122 122 ALA ALA A . n A 1 125 CYS 125 123 123 CYS CYS A . n A 1 126 ALA 126 124 124 ALA ALA A . n A 1 127 VAL 127 125 125 VAL VAL A . n A 1 128 CYS 128 126 126 CYS CYS A . n A 1 129 ILE 129 127 127 ILE ILE A . n A 1 130 THR 130 128 128 THR THR A . n A 1 131 GLY 131 129 129 GLY GLY A . n A 1 132 LYS 132 130 130 LYS LYS A . n A 1 133 GLU 133 131 131 GLU GLU A . n A 1 134 ARG 134 132 132 ARG ARG A . n A 1 135 THR 135 133 133 THR THR A . n A 1 136 LEU 136 134 134 LEU LEU A . n A 1 137 VAL 137 135 135 VAL VAL A . n A 1 138 ALA 138 136 136 ALA ALA A . n A 1 139 ASP 139 137 137 ASP ASP A . n A 1 140 LEU 140 138 138 LEU LEU A . n A 1 141 GLY 141 139 139 GLY GLY A . n A 1 142 ALA 142 140 140 ALA ALA A . n A 1 143 ALA 143 141 141 ALA ALA A . n A 1 144 ASN 144 142 142 ASN ASN A . n A 1 145 HIS 145 143 143 HIS HIS A . n A 1 146 LEU 146 144 144 LEU LEU A . n A 1 147 SER 147 145 145 SER SER A . n A 1 148 SER 148 146 146 SER SER A . n A 1 149 GLU 149 147 147 GLU GLU A . n A 1 150 HIS 150 148 148 HIS HIS A . n A 1 151 MET 151 149 149 MET MET A . n A 1 152 ARG 152 150 150 ARG ARG A . n A 1 153 SER 153 151 151 SER SER A . n A 1 154 PRO 154 152 152 PRO PRO A . n A 1 155 ALA 155 153 153 ALA ALA A . n A 1 156 VAL 156 154 154 VAL VAL A . n A 1 157 VAL 157 155 155 VAL VAL A . n A 1 158 ARG 158 156 156 ARG ARG A . n A 1 159 ALA 159 157 157 ALA ALA A . n A 1 160 MET 160 158 158 MET MET A . n A 1 161 ASP 161 159 159 ASP ASP A . n A 1 162 GLU 162 160 160 GLU GLU A . n A 1 163 SER 163 161 161 SER SER A . n A 1 164 ARG 164 162 162 ARG ARG A . n A 1 165 ILE 165 163 163 ILE ILE A . n A 1 166 PHE 166 164 164 PHE PHE A . n A 1 167 TYR 167 165 165 TYR TYR A . n A 1 168 PHE 168 166 166 PHE PHE A . n A 1 169 SER 169 167 167 SER SER A . n A 1 170 GLY 170 168 168 GLY GLY A . n A 1 171 PHE 171 169 169 PHE PHE A . n A 1 172 THR 172 170 170 THR THR A . n A 1 173 LEU 173 171 171 LEU LEU A . n A 1 174 THR 174 172 172 THR THR A . n A 1 175 VAL 175 173 173 VAL VAL A . n A 1 176 ASP 176 174 174 ASP ASP A . n A 1 177 VAL 177 175 175 VAL VAL A . n A 1 178 ASN 178 176 176 ASN ASN A . n A 1 179 HIS 179 177 177 HIS HIS A . n A 1 180 VAL 180 178 178 VAL VAL A . n A 1 181 LEU 181 179 179 LEU LEU A . n A 1 182 GLN 182 180 180 GLN GLN A . n A 1 183 ALA 183 181 181 ALA ALA A . n A 1 184 CYS 184 182 182 CYS CYS A . n A 1 185 ARG 185 183 183 ARG ARG A . n A 1 186 LYS 186 184 184 LYS LYS A . n A 1 187 ALA 187 185 185 ALA ALA A . n A 1 188 ARG 188 186 186 ARG ARG A . n A 1 189 GLU 189 187 187 GLU GLU A . n A 1 190 VAL 190 188 188 VAL VAL A . n A 1 191 ASP 191 189 189 ASP ASP A . n A 1 192 GLY 192 190 190 GLY GLY A . n A 1 193 LEU 193 191 191 LEU LEU A . n A 1 194 PHE 194 192 192 PHE PHE A . n A 1 195 MET 195 193 193 MET MET A . n A 1 196 ILE 196 194 194 ILE ILE A . n A 1 197 ASN 197 195 195 ASN ASN A . n A 1 198 LEU 198 196 196 LEU LEU A . n A 1 199 SER 199 197 197 SER SER A . n A 1 200 ALA 200 198 198 ALA ALA A . n A 1 201 PRO 201 199 199 PRO PRO A . n A 1 202 PHE 202 200 200 PHE PHE A . n A 1 203 ILE 203 201 201 ILE ILE A . n A 1 204 MET 204 202 202 MET MET A . n A 1 205 GLN 205 203 203 GLN GLN A . n A 1 206 PHE 206 204 204 PHE PHE A . n A 1 207 PHE 207 205 205 PHE PHE A . n A 1 208 SER 208 206 206 SER SER A . n A 1 209 ALA 209 207 207 ALA ALA A . n A 1 210 GLN 210 208 208 GLN GLN A . n A 1 211 LEU 211 209 209 LEU LEU A . n A 1 212 GLY 212 210 210 GLY GLY A . n A 1 213 GLU 213 211 211 GLU GLU A . n A 1 214 VAL 214 212 212 VAL VAL A . n A 1 215 LEU 215 213 213 LEU LEU A . n A 1 216 PRO 216 214 214 PRO PRO A . n A 1 217 TYR 217 215 215 TYR TYR A . n A 1 218 THR 218 216 216 THR THR A . n A 1 219 ASP 219 217 217 ASP ASP A . n A 1 220 ILE 220 218 218 ILE ILE A . n A 1 221 ILE 221 219 219 ILE ILE A . n A 1 222 VAL 222 220 220 VAL VAL A . n A 1 223 ALA 223 221 221 ALA ALA A . n A 1 224 ASN 224 222 222 ASN ASN A . n A 1 225 ARG 225 223 223 ARG ARG A . n A 1 226 HIS 226 224 224 HIS HIS A . n A 1 227 GLU 227 225 225 GLU GLU A . n A 1 228 ALA 228 226 226 ALA ALA A . n A 1 229 LYS 229 227 227 LYS LYS A . n A 1 230 GLU 230 228 228 GLU GLU A . n A 1 231 PHE 231 229 229 PHE PHE A . n A 1 232 ALA 232 230 230 ALA ALA A . n A 1 233 ASN 233 231 231 ASN ASN A . n A 1 234 MET 234 232 232 MET MET A . n A 1 235 MET 235 233 233 MET MET A . n A 1 236 LYS 236 234 234 LYS LYS A . n A 1 237 TRP 237 235 235 TRP TRP A . n A 1 238 ASP 238 236 236 ASP ASP A . n A 1 239 THR 239 237 237 THR THR A . n A 1 240 ASP 240 238 238 ASP ASP A . n A 1 241 CYS 241 239 239 CYS CYS A . n A 1 242 VAL 242 240 240 VAL VAL A . n A 1 243 GLU 243 241 241 GLU GLU A . n A 1 244 GLU 244 242 242 GLU GLU A . n A 1 245 ILE 245 243 243 ILE ILE A . n A 1 246 ALA 246 244 244 ALA ALA A . n A 1 247 ARG 247 245 245 ARG ARG A . n A 1 248 ARG 248 246 246 ARG ARG A . n A 1 249 ALA 249 247 247 ALA ALA A . n A 1 250 VAL 250 248 248 VAL VAL A . n A 1 251 SER 251 249 249 SER SER A . n A 1 252 GLU 252 250 250 GLU GLU A . n A 1 253 VAL 253 251 251 VAL VAL A . n A 1 254 PRO 254 252 252 PRO PRO A . n A 1 255 TYR 255 253 253 TYR TYR A . n A 1 256 THR 256 254 254 THR THR A . n A 1 257 GLY 257 255 255 GLY GLY A . n A 1 258 THR 258 256 256 THR THR A . n A 1 259 LYS 259 257 257 LYS LYS A . n A 1 260 GLY 260 258 258 GLY GLY A . n A 1 261 ARG 261 259 259 ARG ARG A . n A 1 262 VAL 262 260 260 VAL VAL A . n A 1 263 VAL 263 261 261 VAL VAL A . n A 1 264 VAL 264 262 262 VAL VAL A . n A 1 265 PHE 265 263 263 PHE PHE A . n A 1 266 THR 266 264 264 THR THR A . n A 1 267 ARG 267 265 265 ARG ARG A . n A 1 268 ASP 268 266 266 ASP ASP A . n A 1 269 ILE 269 267 267 ILE ILE A . n A 1 270 GLU 270 268 268 GLU GLU A . n A 1 271 SER 271 269 269 SER SER A . n A 1 272 THR 272 270 270 THR THR A . n A 1 273 VAL 273 271 271 VAL VAL A . n A 1 274 LEU 274 272 272 LEU LEU A . n A 1 275 ALA 275 273 273 ALA ALA A . n A 1 276 THR 276 274 274 THR THR A . n A 1 277 LYS 277 275 275 LYS LYS A . n A 1 278 ASP 278 276 276 ASP ASP A . n A 1 279 GLY 279 277 277 GLY GLY A . n A 1 280 VAL 280 278 278 VAL VAL A . n A 1 281 GLU 281 279 279 GLU GLU A . n A 1 282 THR 282 280 280 THR THR A . n A 1 283 VAL 283 281 281 VAL VAL A . n A 1 284 PRO 284 282 282 PRO PRO A . n A 1 285 VAL 285 283 283 VAL VAL A . n A 1 286 PRO 286 284 284 PRO PRO A . n A 1 287 GLN 287 285 285 GLN GLN A . n A 1 288 LEU 288 286 286 LEU LEU A . n A 1 289 ASP 289 287 287 ASP ASP A . n A 1 290 GLN 290 288 288 GLN GLN A . n A 1 291 ASP 291 289 289 ASP ASP A . n A 1 292 LYS 292 290 290 LYS LYS A . n A 1 293 VAL 293 291 291 VAL VAL A . n A 1 294 ILE 294 292 292 ILE ILE A . n A 1 295 ASP 295 293 293 ASP ASP A . n A 1 296 MET 296 294 294 MET MET A . n A 1 297 ASN 297 295 295 ASN ASN A . n A 1 298 GLY 298 296 296 GLY GLY A . n A 1 299 ALA 299 297 297 ALA ALA A . n A 1 300 GLY 300 298 298 GLY GLY A . n A 1 301 ASP 301 299 299 ASP ASP A . n A 1 302 ALA 302 300 300 ALA ALA A . n A 1 303 PHE 303 301 301 PHE PHE A . n A 1 304 MET 304 302 302 MET MET A . n A 1 305 GLY 305 303 303 GLY GLY A . n A 1 306 GLY 306 304 304 GLY GLY A . n A 1 307 PHE 307 305 305 PHE PHE A . n A 1 308 LEU 308 306 306 LEU LEU A . n A 1 309 SER 309 307 307 SER SER A . n A 1 310 ALA 310 308 308 ALA ALA A . n A 1 311 TYR 311 309 309 TYR TYR A . n A 1 312 ALA 312 310 310 ALA ALA A . n A 1 313 VAL 313 311 311 VAL VAL A . n A 1 314 GLY 314 312 312 GLY GLY A . n A 1 315 LYS 315 313 313 LYS LYS A . n A 1 316 ASP 316 314 314 ASP ASP A . n A 1 317 LEU 317 315 315 LEU LEU A . n A 1 318 ARG 318 316 316 ARG ARG A . n A 1 319 ARG 319 317 317 ARG ARG A . n A 1 320 CYS 320 318 318 CYS CYS A . n A 1 321 CYS 321 319 319 CYS CYS A . n A 1 322 GLU 322 320 320 GLU GLU A . n A 1 323 THR 323 321 321 THR THR A . n A 1 324 GLY 324 322 322 GLY GLY A . n A 1 325 HIS 325 323 323 HIS HIS A . n A 1 326 TYR 326 324 324 TYR TYR A . n A 1 327 THR 327 325 325 THR THR A . n A 1 328 ALA 328 326 326 ALA ALA A . n A 1 329 GLN 329 327 327 GLN GLN A . n A 1 330 GLU 330 328 328 GLU GLU A . n A 1 331 VAL 331 329 329 VAL VAL A . n A 1 332 ILE 332 330 330 ILE ILE A . n A 1 333 GLN 333 331 331 GLN GLN A . n A 1 334 ARG 334 332 332 ARG ARG A . n A 1 335 ASP 335 333 ? ? ? A . n A 1 336 GLY 336 334 ? ? ? A . n A 1 337 CYS 337 335 ? ? ? A . n A 1 338 SER 338 336 ? ? ? A . n A 1 339 PHE 339 337 ? ? ? A . n A 1 340 PRO 340 338 ? ? ? A . n A 1 341 GLU 341 339 ? ? ? A . n A 1 342 LYS 342 340 340 LYS LYS A . n A 1 343 PRO 343 341 341 PRO PRO A . n A 1 344 SER 344 342 342 SER SER A . n A 1 345 PHE 345 343 343 PHE PHE A . n A 1 346 SER 346 344 ? ? ? A . n A 1 347 PRO 347 345 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 KRM 1 1344 1344 KRM KRM A . C 3 HOH 1 2001 2001 HOH HOH A . C 3 HOH 2 2002 2002 HOH HOH A . C 3 HOH 3 2003 2003 HOH HOH A . C 3 HOH 4 2004 2004 HOH HOH A . C 3 HOH 5 2005 2005 HOH HOH A . C 3 HOH 6 2006 2006 HOH HOH A . C 3 HOH 7 2007 2007 HOH HOH A . C 3 HOH 8 2008 2008 HOH HOH A . C 3 HOH 9 2009 2009 HOH HOH A . C 3 HOH 10 2010 2010 HOH HOH A . C 3 HOH 11 2011 2011 HOH HOH A . C 3 HOH 12 2012 2012 HOH HOH A . C 3 HOH 13 2013 2013 HOH HOH A . C 3 HOH 14 2014 2014 HOH HOH A . C 3 HOH 15 2015 2015 HOH HOH A . C 3 HOH 16 2016 2016 HOH HOH A . C 3 HOH 17 2017 2017 HOH HOH A . C 3 HOH 18 2018 2018 HOH HOH A . C 3 HOH 19 2019 2019 HOH HOH A . C 3 HOH 20 2020 2020 HOH HOH A . C 3 HOH 21 2021 2021 HOH HOH A . C 3 HOH 22 2022 2022 HOH HOH A . C 3 HOH 23 2023 2023 HOH HOH A . C 3 HOH 24 2024 2024 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-06-29 2 'Structure model' 1 1 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0019 ? 1 MOSFLM 'data reduction' . ? 2 SCALA 'data scaling' . ? 3 MOLREP phasing . ? 4 # _pdbx_entry_details.entry_id 2XTB _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THE FIRST TWO RESIDUES ARE RESULT OF THROMBIN CLEAVAGE OF AFFINITY TAG. THE ALA IN POSITION TWO IS A CLONING ARTIFACT. ; # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 41 ? ? -114.50 -169.86 2 1 GLN A 76 ? ? -102.82 68.50 3 1 PHE A 83 ? ? -131.11 -77.58 4 1 ASP A 92 ? ? -80.98 37.33 5 1 VAL A 173 ? ? -85.83 -77.84 6 1 ASP A 189 ? ? 58.90 17.41 7 1 SER A 197 ? ? 65.09 -42.22 8 1 ASP A 266 ? ? 34.06 -103.56 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -1 ? A GLY 1 2 1 Y 1 A ASP 333 ? A ASP 335 3 1 Y 1 A GLY 334 ? A GLY 336 4 1 Y 1 A CYS 335 ? A CYS 337 5 1 Y 1 A SER 336 ? A SER 338 6 1 Y 1 A PHE 337 ? A PHE 339 7 1 Y 1 A PRO 338 ? A PRO 340 8 1 Y 1 A GLU 339 ? A GLU 341 9 1 Y 1 A SER 344 ? A SER 346 10 1 Y 1 A PRO 345 ? A PRO 347 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '4-[5-(4-PHENOXYPHENYL)-1H-PYRAZOL-3-YL]MORPHOLINE' KRM 3 water HOH #