HEADER HYDROLASE 17-OCT-10 2XUA TITLE CRYSTAL STRUCTURE OF THE ENOL-LACTONASE FROM BURKHOLDERIA XENOVORANS TITLE 2 LB400 COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3-OXOADIPATE ENOL-LACTONASE; COMPND 3 CHAIN: A, H; COMPND 4 SYNONYM: PCAD; COMPND 5 EC: 3.1.1.24; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA XENOVORANS; SOURCE 3 ORGANISM_TAXID: 266265; SOURCE 4 STRAIN: LB400; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET 28(A) KEYWDS HYDROLASE, CATECHOL METABOLISM EXPDTA X-RAY DIFFRACTION AUTHOR J.BAINS,L.KAUFMAN,B.FARNELL,M.J.BOULANGER REVDAT 3 23-OCT-24 2XUA 1 REMARK LINK REVDAT 2 06-APR-11 2XUA 1 JRNL REVDAT 1 26-JAN-11 2XUA 0 JRNL AUTH J.BAINS,L.KAUFMAN,B.FARNELL,M.J.BOULANGER JRNL TITL A PRODUCT ANALOG BOUND FORM OF 3-OXOADIPATE-ENOL- LACTONASE JRNL TITL 2 (PCAD) REVEALS A MULTIFUNCTIONAL ROLE FOR THE DIVERGENT CAP JRNL TITL 3 DOMAIN. JRNL REF J.MOL.BIOL. V. 406 649 2011 JRNL REFN ISSN 0022-2836 JRNL PMID 21237173 JRNL DOI 10.1016/J.JMB.2011.01.007 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.26 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 92.8 REMARK 3 NUMBER OF REFLECTIONS : 34754 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1837 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2350 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.16 REMARK 3 BIN R VALUE (WORKING SET) : 0.2260 REMARK 3 BIN FREE R VALUE SET COUNT : 121 REMARK 3 BIN FREE R VALUE : 0.3220 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3968 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 445 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : -0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.184 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.170 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.110 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.713 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.924 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4061 ; 0.022 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5525 ; 1.984 ; 1.949 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 519 ; 6.781 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 178 ;33.743 ;22.697 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 633 ;17.082 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 38 ;21.199 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 625 ; 0.162 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3114 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2589 ; 1.113 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4139 ; 1.871 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1472 ; 3.309 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1386 ; 5.004 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2XUA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-OCT-10. REMARK 100 THE DEPOSITION ID IS D_1290045795. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36592 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 36.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.4 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 33.36000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 50.58000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.36000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 50.58000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2218 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 SER A 2 REMARK 465 HIS A 3 REMARK 465 MSE A 4 REMARK 465 GLN A 265 REMARK 465 LYS A 266 REMARK 465 GLY H 1 REMARK 465 SER H 2 REMARK 465 HIS H 3 REMARK 465 GLN H 265 REMARK 465 LYS H 266 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN A 10 O HOH A 2004 1.99 REMARK 500 CE MSE A 173 O HOH H 2039 2.00 REMARK 500 NH2 ARG H 166 O HOH H 2133 2.01 REMARK 500 OE1 GLU H 21 O HOH H 2019 2.04 REMARK 500 O VAL A 9 O HOH A 2003 2.12 REMARK 500 O HOH H 2038 O HOH H 2039 2.14 REMARK 500 OD1 ASP A 87 NH2 ARG A 116 2.16 REMARK 500 OE1 GLU A 264 O HOH A 2233 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 21 CB GLU A 21 CG -0.163 REMARK 500 GLU A 21 CG GLU A 21 CD -0.121 REMARK 500 TYR A 163 CD1 TYR A 163 CE1 0.094 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 39 CA - CB - CG ANGL. DEV. = 17.6 DEGREES REMARK 500 LEU A 39 CB - CG - CD2 ANGL. DEV. = 10.4 DEGREES REMARK 500 LEU A 109 CB - CG - CD1 ANGL. DEV. = 10.3 DEGREES REMARK 500 ARG A 116 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 116 NE - CZ - NH2 ANGL. DEV. = -6.2 DEGREES REMARK 500 ARG H 22 NE - CZ - NH2 ANGL. DEV. = 3.4 DEGREES REMARK 500 LEU H 39 CA - CB - CG ANGL. DEV. = 15.0 DEGREES REMARK 500 LEU H 39 CB - CG - CD2 ANGL. DEV. = 10.6 DEGREES REMARK 500 ARG H 143 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG H 143 NE - CZ - NH2 ANGL. DEV. = -4.8 DEGREES REMARK 500 ARG H 166 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG H 166 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 LEU H 171 CA - CB - CG ANGL. DEV. = -18.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 100 -112.82 54.62 REMARK 500 SER A 243 -135.34 -100.01 REMARK 500 ILE A 245 70.74 -100.80 REMARK 500 SER H 100 -116.46 55.23 REMARK 500 HIS H 113 48.04 -140.67 REMARK 500 SER H 243 -136.76 -94.24 REMARK 500 ILE H 245 67.15 -101.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2020 DISTANCE = 6.40 ANGSTROMS REMARK 525 HOH H2011 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH H2071 DISTANCE = 6.81 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SHF H 1265 DBREF 2XUA A 4 266 UNP Q13KT2 Q13KT2_BURXL 1 263 DBREF 2XUA H 4 266 UNP Q13KT2 Q13KT2_BURXL 1 263 SEQADV 2XUA GLY A 1 UNP Q13KT2 EXPRESSION TAG SEQADV 2XUA SER A 2 UNP Q13KT2 EXPRESSION TAG SEQADV 2XUA HIS A 3 UNP Q13KT2 EXPRESSION TAG SEQADV 2XUA GLY H 1 UNP Q13KT2 EXPRESSION TAG SEQADV 2XUA SER H 2 UNP Q13KT2 EXPRESSION TAG SEQADV 2XUA HIS H 3 UNP Q13KT2 EXPRESSION TAG SEQRES 1 A 266 GLY SER HIS MSE PRO TYR ALA ALA VAL ASN GLY THR GLU SEQRES 2 A 266 LEU HIS TYR ARG ILE ASP GLY GLU ARG HIS GLY ASN ALA SEQRES 3 A 266 PRO TRP ILE VAL LEU SER ASN SER LEU GLY THR ASP LEU SEQRES 4 A 266 SER MSE TRP ALA PRO GLN VAL ALA ALA LEU SER LYS HIS SEQRES 5 A 266 PHE ARG VAL LEU ARG TYR ASP THR ARG GLY HIS GLY HIS SEQRES 6 A 266 SER GLU ALA PRO LYS GLY PRO TYR THR ILE GLU GLN LEU SEQRES 7 A 266 THR GLY ASP VAL LEU GLY LEU MSE ASP THR LEU LYS ILE SEQRES 8 A 266 ALA ARG ALA ASN PHE CYS GLY LEU SER MSE GLY GLY LEU SEQRES 9 A 266 THR GLY VAL ALA LEU ALA ALA ARG HIS ALA ASP ARG ILE SEQRES 10 A 266 GLU ARG VAL ALA LEU CYS ASN THR ALA ALA ARG ILE GLY SEQRES 11 A 266 SER PRO GLU VAL TRP VAL PRO ARG ALA VAL LYS ALA ARG SEQRES 12 A 266 THR GLU GLY MSE HIS ALA LEU ALA ASP ALA VAL LEU PRO SEQRES 13 A 266 ARG TRP PHE THR ALA ASP TYR MSE GLU ARG GLU PRO VAL SEQRES 14 A 266 VAL LEU ALA MSE ILE ARG ASP VAL PHE VAL HIS THR ASP SEQRES 15 A 266 LYS GLU GLY TYR ALA SER ASN CYS GLU ALA ILE ASP ALA SEQRES 16 A 266 ALA ASP LEU ARG PRO GLU ALA PRO GLY ILE LYS VAL PRO SEQRES 17 A 266 ALA LEU VAL ILE SER GLY THR HIS ASP LEU ALA ALA THR SEQRES 18 A 266 PRO ALA GLN GLY ARG GLU LEU ALA GLN ALA ILE ALA GLY SEQRES 19 A 266 ALA ARG TYR VAL GLU LEU ASP ALA SER HIS ILE SER ASN SEQRES 20 A 266 ILE GLU ARG ALA ASP ALA PHE THR LYS THR VAL VAL ASP SEQRES 21 A 266 PHE LEU THR GLU GLN LYS SEQRES 1 H 266 GLY SER HIS MSE PRO TYR ALA ALA VAL ASN GLY THR GLU SEQRES 2 H 266 LEU HIS TYR ARG ILE ASP GLY GLU ARG HIS GLY ASN ALA SEQRES 3 H 266 PRO TRP ILE VAL LEU SER ASN SER LEU GLY THR ASP LEU SEQRES 4 H 266 SER MSE TRP ALA PRO GLN VAL ALA ALA LEU SER LYS HIS SEQRES 5 H 266 PHE ARG VAL LEU ARG TYR ASP THR ARG GLY HIS GLY HIS SEQRES 6 H 266 SER GLU ALA PRO LYS GLY PRO TYR THR ILE GLU GLN LEU SEQRES 7 H 266 THR GLY ASP VAL LEU GLY LEU MSE ASP THR LEU LYS ILE SEQRES 8 H 266 ALA ARG ALA ASN PHE CYS GLY LEU SER MSE GLY GLY LEU SEQRES 9 H 266 THR GLY VAL ALA LEU ALA ALA ARG HIS ALA ASP ARG ILE SEQRES 10 H 266 GLU ARG VAL ALA LEU CYS ASN THR ALA ALA ARG ILE GLY SEQRES 11 H 266 SER PRO GLU VAL TRP VAL PRO ARG ALA VAL LYS ALA ARG SEQRES 12 H 266 THR GLU GLY MSE HIS ALA LEU ALA ASP ALA VAL LEU PRO SEQRES 13 H 266 ARG TRP PHE THR ALA ASP TYR MSE GLU ARG GLU PRO VAL SEQRES 14 H 266 VAL LEU ALA MSE ILE ARG ASP VAL PHE VAL HIS THR ASP SEQRES 15 H 266 LYS GLU GLY TYR ALA SER ASN CYS GLU ALA ILE ASP ALA SEQRES 16 H 266 ALA ASP LEU ARG PRO GLU ALA PRO GLY ILE LYS VAL PRO SEQRES 17 H 266 ALA LEU VAL ILE SER GLY THR HIS ASP LEU ALA ALA THR SEQRES 18 H 266 PRO ALA GLN GLY ARG GLU LEU ALA GLN ALA ILE ALA GLY SEQRES 19 H 266 ALA ARG TYR VAL GLU LEU ASP ALA SER HIS ILE SER ASN SEQRES 20 H 266 ILE GLU ARG ALA ASP ALA PHE THR LYS THR VAL VAL ASP SEQRES 21 H 266 PHE LEU THR GLU GLN LYS MODRES 2XUA MSE A 41 MET SELENOMETHIONINE MODRES 2XUA MSE A 86 MET SELENOMETHIONINE MODRES 2XUA MSE A 101 MET SELENOMETHIONINE MODRES 2XUA MSE A 147 MET SELENOMETHIONINE MODRES 2XUA MSE A 164 MET SELENOMETHIONINE MODRES 2XUA MSE A 173 MET SELENOMETHIONINE MODRES 2XUA MSE H 4 MET SELENOMETHIONINE MODRES 2XUA MSE H 41 MET SELENOMETHIONINE MODRES 2XUA MSE H 86 MET SELENOMETHIONINE MODRES 2XUA MSE H 101 MET SELENOMETHIONINE MODRES 2XUA MSE H 147 MET SELENOMETHIONINE MODRES 2XUA MSE H 164 MET SELENOMETHIONINE MODRES 2XUA MSE H 173 MET SELENOMETHIONINE HET MSE A 41 8 HET MSE A 86 8 HET MSE A 101 8 HET MSE A 147 8 HET MSE A 164 8 HET MSE A 173 8 HET MSE H 4 8 HET MSE H 41 8 HET MSE H 86 8 HET MSE H 101 8 HET MSE H 147 8 HET MSE H 164 8 HET MSE H 173 8 HET SHF H1265 8 HETNAM MSE SELENOMETHIONINE HETNAM SHF LAEVULINIC ACID HETSYN SHF LEVULINIC ACID FORMUL 1 MSE 13(C5 H11 N O2 SE) FORMUL 3 SHF C5 H8 O3 FORMUL 4 HOH *445(H2 O) HELIX 1 1 ASP A 38 PRO A 44 5 7 HELIX 2 2 GLN A 45 LYS A 51 1 7 HELIX 3 3 THR A 74 LEU A 89 1 16 HELIX 4 4 SER A 100 HIS A 113 1 14 HELIX 5 5 SER A 131 GLY A 146 1 16 HELIX 6 6 GLY A 146 PHE A 159 1 14 HELIX 7 7 THR A 160 GLU A 167 1 8 HELIX 8 8 GLU A 167 HIS A 180 1 14 HELIX 9 9 ASP A 182 ALA A 196 1 15 HELIX 10 10 LEU A 198 ILE A 205 5 8 HELIX 11 11 THR A 221 ILE A 232 1 12 HELIX 12 12 ILE A 245 ARG A 250 1 6 HELIX 13 13 ARG A 250 THR A 263 1 14 HELIX 14 14 ASP H 38 MSE H 41 5 4 HELIX 15 15 TRP H 42 PHE H 53 1 12 HELIX 16 16 THR H 74 LEU H 89 1 16 HELIX 17 17 SER H 100 HIS H 113 1 14 HELIX 18 18 SER H 131 GLY H 146 1 16 HELIX 19 19 GLY H 146 LEU H 155 1 10 HELIX 20 20 PRO H 156 TRP H 158 5 3 HELIX 21 21 THR H 160 GLU H 167 1 8 HELIX 22 22 GLU H 167 HIS H 180 1 14 HELIX 23 23 ASP H 182 ALA H 196 1 15 HELIX 24 24 GLU H 201 ILE H 205 5 5 HELIX 25 25 THR H 221 ILE H 232 1 12 HELIX 26 26 ILE H 245 ARG H 250 1 6 HELIX 27 27 ARG H 250 GLU H 264 1 15 SHEET 1 AA 8 TYR A 6 ALA A 8 0 SHEET 2 AA 8 GLU A 13 ASP A 19 -1 O LEU A 14 N ALA A 7 SHEET 3 AA 8 ARG A 54 TYR A 58 -1 O VAL A 55 N ASP A 19 SHEET 4 AA 8 TRP A 28 SER A 32 1 O ILE A 29 N LEU A 56 SHEET 5 AA 8 ALA A 94 LEU A 99 1 O ASN A 95 N VAL A 30 SHEET 6 AA 8 ILE A 117 CYS A 123 1 N GLU A 118 O ALA A 94 SHEET 7 AA 8 ALA A 209 GLY A 214 1 O LEU A 210 N LEU A 122 SHEET 8 AA 8 ARG A 236 LEU A 240 1 O ARG A 236 N VAL A 211 SHEET 1 HA 8 TYR H 6 VAL H 9 0 SHEET 2 HA 8 THR H 12 ASP H 19 -1 O THR H 12 N VAL H 9 SHEET 3 HA 8 ARG H 54 TYR H 58 -1 O VAL H 55 N ASP H 19 SHEET 4 HA 8 TRP H 28 SER H 32 1 O ILE H 29 N LEU H 56 SHEET 5 HA 8 ALA H 94 LEU H 99 1 O ASN H 95 N VAL H 30 SHEET 6 HA 8 ILE H 117 CYS H 123 1 N GLU H 118 O ALA H 94 SHEET 7 HA 8 ALA H 209 GLY H 214 1 O LEU H 210 N LEU H 122 SHEET 8 HA 8 ARG H 236 LEU H 240 1 O ARG H 236 N VAL H 211 LINK C SER A 40 N MSE A 41 1555 1555 1.33 LINK C MSE A 41 N TRP A 42 1555 1555 1.34 LINK C LEU A 85 N MSE A 86 1555 1555 1.33 LINK C MSE A 86 N ASP A 87 1555 1555 1.35 LINK C SER A 100 N MSE A 101 1555 1555 1.34 LINK C MSE A 101 N GLY A 102 1555 1555 1.33 LINK C GLY A 146 N MSE A 147 1555 1555 1.33 LINK C MSE A 147 N HIS A 148 1555 1555 1.34 LINK C TYR A 163 N MSE A 164 1555 1555 1.32 LINK C MSE A 164 N GLU A 165 1555 1555 1.33 LINK C ALA A 172 N MSE A 173 1555 1555 1.34 LINK C MSE A 173 N ILE A 174 1555 1555 1.33 LINK C MSE H 4 N PRO H 5 1555 1555 1.36 LINK C SER H 40 N MSE H 41 1555 1555 1.34 LINK C MSE H 41 N TRP H 42 1555 1555 1.35 LINK C LEU H 85 N MSE H 86 1555 1555 1.34 LINK C MSE H 86 N ASP H 87 1555 1555 1.33 LINK C SER H 100 N MSE H 101 1555 1555 1.34 LINK C MSE H 101 N GLY H 102 1555 1555 1.35 LINK C GLY H 146 N MSE H 147 1555 1555 1.33 LINK C MSE H 147 N HIS H 148 1555 1555 1.33 LINK C TYR H 163 N MSE H 164 1555 1555 1.34 LINK C MSE H 164 N GLU H 165 1555 1555 1.32 LINK C ALA H 172 N MSE H 173 1555 1555 1.33 LINK C MSE H 173 N ILE H 174 1555 1555 1.33 CISPEP 1 GLY A 71 PRO A 72 0 -1.18 CISPEP 2 GLY H 71 PRO H 72 0 7.46 SITE 1 AC1 11 SER H 34 LEU H 35 ARG H 138 VAL H 154 SITE 2 AC1 11 ARG H 157 TRP H 158 PHE H 178 TYR H 186 SITE 3 AC1 11 ALA H 219 HOH H2015 HOH H2194 CRYST1 66.720 101.160 72.520 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014988 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009885 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013789 0.00000