data_2XVS # _entry.id 2XVS # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2XVS PDBE EBI-46010 WWPDB D_1290046010 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2XVS _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2010-10-31 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Adams, J.' 1 'Pike, A.C.W.' 2 'Maniam, S.' 3 'Sharpe, T.D.' 4 'Coutts, A.S.' 5 'Knapp, S.' 6 'La Thangue, B.' 7 'Bullock, A.N.' 8 # _citation.id primary _citation.title 'The P53 Cofactor Strap Exhibits an Unexpected Tpr Motif and Oligonucleotide-Binding (Ob)-Fold Structure.' _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 109 _citation.page_first 3778 _citation.page_last ? _citation.year 2012 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22362889 _citation.pdbx_database_id_DOI 10.1073/PNAS.1113731109 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Adams, C.J.' 1 primary 'Pike, A.C.' 2 primary 'Maniam, S.' 3 primary 'Sharpe, T.D.' 4 primary 'Coutts, A.S.' 5 primary 'Knapp, S.' 6 primary 'La Thangue, N.B.' 7 primary 'Bullock, A.N.' 8 # _cell.entry_id 2XVS _cell.length_a 30.260 _cell.length_b 62.390 _cell.length_c 78.770 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2XVS _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'TETRATRICOPEPTIDE REPEAT PROTEIN 5' 18182.023 1 ? ? 'OLIGONUCLEOTIDE-BINDING DOMAIN, RESIDUES 262-424' ? 2 non-polymer syn 'IODIDE ION' 126.904 3 ? ? ? ? 3 non-polymer syn 1,2-ETHANEDIOL 62.068 1 ? ? ? ? 4 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 5 water nat water 18.015 116 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'TPR REPEAT PROTEIN 5, STRAP' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;SMRQREQQLLEFLDRLTSLLESKGKVKTKKLQSMLGSLRPAHLGPCSDGHYQSASGQKVTLELKPLSTLQPGVNSGAVIL GKVVFSLTTEEKVPFTFGLVDSDGPCYAVMVYNIVQSWGVLIGDSVAIPEPNLRLHRIQHKGKDYSFSSVRVETPLLLVV NGKPQG ; _entity_poly.pdbx_seq_one_letter_code_can ;SMRQREQQLLEFLDRLTSLLESKGKVKTKKLQSMLGSLRPAHLGPCSDGHYQSASGQKVTLELKPLSTLQPGVNSGAVIL GKVVFSLTTEEKVPFTFGLVDSDGPCYAVMVYNIVQSWGVLIGDSVAIPEPNLRLHRIQHKGKDYSFSSVRVETPLLLVV NGKPQG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 MET n 1 3 ARG n 1 4 GLN n 1 5 ARG n 1 6 GLU n 1 7 GLN n 1 8 GLN n 1 9 LEU n 1 10 LEU n 1 11 GLU n 1 12 PHE n 1 13 LEU n 1 14 ASP n 1 15 ARG n 1 16 LEU n 1 17 THR n 1 18 SER n 1 19 LEU n 1 20 LEU n 1 21 GLU n 1 22 SER n 1 23 LYS n 1 24 GLY n 1 25 LYS n 1 26 VAL n 1 27 LYS n 1 28 THR n 1 29 LYS n 1 30 LYS n 1 31 LEU n 1 32 GLN n 1 33 SER n 1 34 MET n 1 35 LEU n 1 36 GLY n 1 37 SER n 1 38 LEU n 1 39 ARG n 1 40 PRO n 1 41 ALA n 1 42 HIS n 1 43 LEU n 1 44 GLY n 1 45 PRO n 1 46 CYS n 1 47 SER n 1 48 ASP n 1 49 GLY n 1 50 HIS n 1 51 TYR n 1 52 GLN n 1 53 SER n 1 54 ALA n 1 55 SER n 1 56 GLY n 1 57 GLN n 1 58 LYS n 1 59 VAL n 1 60 THR n 1 61 LEU n 1 62 GLU n 1 63 LEU n 1 64 LYS n 1 65 PRO n 1 66 LEU n 1 67 SER n 1 68 THR n 1 69 LEU n 1 70 GLN n 1 71 PRO n 1 72 GLY n 1 73 VAL n 1 74 ASN n 1 75 SER n 1 76 GLY n 1 77 ALA n 1 78 VAL n 1 79 ILE n 1 80 LEU n 1 81 GLY n 1 82 LYS n 1 83 VAL n 1 84 VAL n 1 85 PHE n 1 86 SER n 1 87 LEU n 1 88 THR n 1 89 THR n 1 90 GLU n 1 91 GLU n 1 92 LYS n 1 93 VAL n 1 94 PRO n 1 95 PHE n 1 96 THR n 1 97 PHE n 1 98 GLY n 1 99 LEU n 1 100 VAL n 1 101 ASP n 1 102 SER n 1 103 ASP n 1 104 GLY n 1 105 PRO n 1 106 CYS n 1 107 TYR n 1 108 ALA n 1 109 VAL n 1 110 MET n 1 111 VAL n 1 112 TYR n 1 113 ASN n 1 114 ILE n 1 115 VAL n 1 116 GLN n 1 117 SER n 1 118 TRP n 1 119 GLY n 1 120 VAL n 1 121 LEU n 1 122 ILE n 1 123 GLY n 1 124 ASP n 1 125 SER n 1 126 VAL n 1 127 ALA n 1 128 ILE n 1 129 PRO n 1 130 GLU n 1 131 PRO n 1 132 ASN n 1 133 LEU n 1 134 ARG n 1 135 LEU n 1 136 HIS n 1 137 ARG n 1 138 ILE n 1 139 GLN n 1 140 HIS n 1 141 LYS n 1 142 GLY n 1 143 LYS n 1 144 ASP n 1 145 TYR n 1 146 SER n 1 147 PHE n 1 148 SER n 1 149 SER n 1 150 VAL n 1 151 ARG n 1 152 VAL n 1 153 GLU n 1 154 THR n 1 155 PRO n 1 156 LEU n 1 157 LEU n 1 158 LEU n 1 159 VAL n 1 160 VAL n 1 161 ASN n 1 162 GLY n 1 163 LYS n 1 164 PRO n 1 165 GLN n 1 166 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name HUMAN _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'HOMO SAPIENS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant R3-PRARE2 _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PNIC28-BSA4 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code TTC5_HUMAN _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession Q8N0Z6 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2XVS _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 3 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 166 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q8N0Z6 _struct_ref_seq.db_align_beg 261 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 424 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 261 _struct_ref_seq.pdbx_auth_seq_align_end 424 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2XVS SER A 1 ? UNP Q8N0Z6 ? ? 'expression tag' -1 1 1 2XVS MET A 2 ? UNP Q8N0Z6 ? ? 'expression tag' 0 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 IOD non-polymer . 'IODIDE ION' ? 'I -1' 126.904 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2XVS _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.05 _exptl_crystal.density_percent_sol 40 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '0.18M SODIUM IODIDE, 0.02M SODIUM ACETATE, 20% PEG3350, 10% ETHYLENE GLYCOL, 0.45% DMSO, 0.1M BIS-TRIS-PROPANE PH8.5' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2008-11-06 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.99988 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SLS BEAMLINE X10SA' _diffrn_source.pdbx_synchrotron_site SLS _diffrn_source.pdbx_synchrotron_beamline X10SA _diffrn_source.pdbx_wavelength 0.99988 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2XVS _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 33.30 _reflns.d_resolution_high 1.80 _reflns.number_obs 14246 _reflns.number_all ? _reflns.percent_possible_obs 98.6 _reflns.pdbx_Rmerge_I_obs 0.10 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 8.70 _reflns.B_iso_Wilson_estimate 14.5 _reflns.pdbx_redundancy 3.5 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.80 _reflns_shell.d_res_low 1.90 _reflns_shell.percent_possible_all 91.0 _reflns_shell.Rmerge_I_obs 0.50 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.10 _reflns_shell.pdbx_redundancy 2.9 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2XVS _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 13521 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 78.77 _refine.ls_d_res_high 1.80 _refine.ls_percent_reflns_obs 98.34 _refine.ls_R_factor_obs 0.17550 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.17242 _refine.ls_R_factor_R_free 0.23638 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 723 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.954 _refine.correlation_coeff_Fo_to_Fc_free 0.919 _refine.B_iso_mean 18.906 _refine.aniso_B[1][1] -0.55 _refine.aniso_B[2][2] 0.02 _refine.aniso_B[3][3] 0.53 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS.' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.132 _refine.pdbx_overall_ESU_R_Free 0.139 _refine.overall_SU_ML 0.089 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 5.787 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1237 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 8 _refine_hist.number_atoms_solvent 116 _refine_hist.number_atoms_total 1361 _refine_hist.d_res_high 1.80 _refine_hist.d_res_low 78.77 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.016 0.022 ? 1283 'X-RAY DIFFRACTION' ? r_bond_other_d 0.002 0.020 ? 864 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.524 1.997 ? 1742 'X-RAY DIFFRACTION' ? r_angle_other_deg 2.009 3.000 ? 2133 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.944 5.000 ? 167 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 32.110 24.375 ? 48 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 12.901 15.000 ? 219 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 21.447 15.000 ? 7 'X-RAY DIFFRACTION' ? r_chiral_restr 0.085 0.200 ? 205 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.007 0.021 ? 1418 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 236 'X-RAY DIFFRACTION' ? r_nbd_refined 0.211 0.200 ? 207 'X-RAY DIFFRACTION' ? r_nbd_other 0.185 0.200 ? 826 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.167 0.200 ? 607 'X-RAY DIFFRACTION' ? r_nbtor_other 0.093 0.200 ? 639 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.154 0.200 ? 75 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.160 0.200 ? 17 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 0.189 0.200 ? 25 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.228 0.200 ? 7 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 3.239 3.000 ? 829 'X-RAY DIFFRACTION' ? r_mcbond_other 0.974 3.000 ? 337 'X-RAY DIFFRACTION' ? r_mcangle_it 4.438 5.000 ? 1336 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 7.007 8.000 ? 454 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 8.361 11.000 ? 405 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free 16.483 3.000 ? 4 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.800 _refine_ls_shell.d_res_low 1.847 _refine_ls_shell.number_reflns_R_work 803 _refine_ls_shell.R_factor_R_work 0.259 _refine_ls_shell.percent_reflns_obs 84.08 _refine_ls_shell.R_factor_R_free 0.265 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 58 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 2XVS _struct.title 'Crystal structure of human TTC5 (Strap) C-terminal OB domain' _struct.pdbx_descriptor 'TETRATRICOPEPTIDE REPEAT PROTEIN 5' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2XVS _struct_keywords.pdbx_keywords 'ANTITUMOR PROTEIN' _struct_keywords.text 'ANTITUMOR PROTEIN, P53 COFACTOR, STRESS-RESPONSE, P300' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 2 ? F N N 2 ? G N N 5 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ARG A 3 ? LYS A 23 ? ARG A 261 LYS A 281 1 ? 21 HELX_P HELX_P2 2 GLY A 24 ? VAL A 26 ? GLY A 282 VAL A 284 5 ? 3 HELX_P HELX_P3 3 LYS A 27 ? SER A 37 ? LYS A 285 SER A 295 1 ? 11 HELX_P HELX_P4 4 ARG A 39 ? SER A 47 ? ARG A 297 SER A 305 5 ? 9 HELX_P HELX_P5 5 PRO A 65 ? LEU A 69 ? PRO A 323 LEU A 327 5 ? 5 HELX_P HELX_P6 6 THR A 154 ? LEU A 157 ? THR A 412 LEU A 415 5 ? 4 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id VAL _struct_mon_prot_cis.label_seq_id 93 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id VAL _struct_mon_prot_cis.auth_seq_id 351 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 94 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 352 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -3.19 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 2 ? AB ? 2 ? AC ? 9 ? AD ? 7 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AB 1 2 ? parallel AC 1 2 ? anti-parallel AC 2 3 ? anti-parallel AC 3 4 ? parallel AC 4 5 ? anti-parallel AC 5 6 ? anti-parallel AC 6 7 ? anti-parallel AC 7 8 ? parallel AC 8 9 ? parallel AD 1 2 ? anti-parallel AD 2 3 ? anti-parallel AD 3 4 ? parallel AD 4 5 ? anti-parallel AD 5 6 ? anti-parallel AD 6 7 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 TYR A 51 ? GLN A 52 ? TYR A 309 GLN A 310 AA 2 LYS A 58 ? VAL A 59 ? LYS A 316 VAL A 317 AB 1 GLU A 62 ? LEU A 63 ? GLU A 320 LEU A 321 AB 2 ALA A 77 ? LEU A 87 ? ALA A 335 LEU A 345 AC 1 GLY A 72 ? VAL A 73 ? GLY A 330 VAL A 331 AC 2 ASN A 132 ? HIS A 140 ? ASN A 390 HIS A 398 AC 3 LYS A 143 ? VAL A 152 ? LYS A 401 VAL A 410 AC 4 TYR A 107 ? VAL A 111 ? TYR A 365 VAL A 369 AC 5 PHE A 95 ? VAL A 100 ? PHE A 353 VAL A 358 AC 6 ALA A 77 ? LEU A 87 ? ALA A 335 LEU A 345 AC 7 SER A 125 ? PRO A 129 ? SER A 383 PRO A 387 AC 8 VAL A 159 ? VAL A 160 ? VAL A 417 VAL A 418 AC 9 LYS A 163 ? PRO A 164 ? LYS A 421 PRO A 422 AD 1 GLY A 72 ? VAL A 73 ? GLY A 330 VAL A 331 AD 2 ASN A 132 ? HIS A 140 ? ASN A 390 HIS A 398 AD 3 LYS A 143 ? VAL A 152 ? LYS A 401 VAL A 410 AD 4 TYR A 107 ? VAL A 111 ? TYR A 365 VAL A 369 AD 5 PHE A 95 ? VAL A 100 ? PHE A 353 VAL A 358 AD 6 ALA A 77 ? LEU A 87 ? ALA A 335 LEU A 345 AD 7 GLU A 62 ? LEU A 63 ? GLU A 320 LEU A 321 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N TYR A 51 ? N TYR A 309 O VAL A 59 ? O VAL A 317 AB 1 2 O GLU A 62 ? O GLU A 320 N VAL A 78 ? N VAL A 336 AC 1 2 N GLY A 72 ? N GLY A 330 O LEU A 133 ? O LEU A 391 AC 2 3 N HIS A 140 ? N HIS A 398 O LYS A 143 ? O LYS A 401 AC 3 4 N VAL A 150 ? N VAL A 408 O ALA A 108 ? O ALA A 366 AC 4 5 N VAL A 111 ? N VAL A 369 O PHE A 95 ? O PHE A 353 AC 5 6 N VAL A 100 ? N VAL A 358 O LYS A 82 ? O LYS A 340 AC 6 7 N GLY A 81 ? N GLY A 339 O VAL A 126 ? O VAL A 384 AC 7 8 N ALA A 127 ? N ALA A 385 O VAL A 159 ? O VAL A 417 AC 8 9 N VAL A 160 ? N VAL A 418 O LYS A 163 ? O LYS A 421 AD 1 2 N GLY A 72 ? N GLY A 330 O LEU A 133 ? O LEU A 391 AD 2 3 N HIS A 140 ? N HIS A 398 O LYS A 143 ? O LYS A 401 AD 3 4 N VAL A 150 ? N VAL A 408 O ALA A 108 ? O ALA A 366 AD 4 5 N VAL A 111 ? N VAL A 369 O PHE A 95 ? O PHE A 353 AD 5 6 N VAL A 100 ? N VAL A 358 O LYS A 82 ? O LYS A 340 AD 6 7 N VAL A 78 ? N VAL A 336 O GLU A 62 ? O GLU A 320 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE IOD A 1425' AC2 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE EDO A 1426' AC3 Software ? ? ? ? 1 'BINDING SITE FOR RESIDUE CL A 1427' AC4 Software ? ? ? ? 1 'BINDING SITE FOR RESIDUE IOD A 1428' AC5 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE IOD A 1429' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 GLN A 116 ? GLN A 374 . ? 1_555 ? 2 AC1 2 HOH G . ? HOH A 2002 . ? 4_545 ? 3 AC2 3 GLN A 32 ? GLN A 290 . ? 1_555 ? 4 AC2 3 LEU A 35 ? LEU A 293 . ? 1_555 ? 5 AC2 3 ASP A 103 ? ASP A 361 . ? 1_555 ? 6 AC3 1 SER A 86 ? SER A 344 . ? 1_555 ? 7 AC4 1 ASN A 113 ? ASN A 371 . ? 4_445 ? 8 AC5 2 LYS A 23 ? LYS A 281 . ? 4_555 ? 9 AC5 2 HOH G . ? HOH A 2065 . ? 4_555 ? # _database_PDB_matrix.entry_id 2XVS _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2XVS _atom_sites.fract_transf_matrix[1][1] 0.033047 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016028 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012695 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL I N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 -1 -1 SER SER A . n A 1 2 MET 2 0 0 MET MET A . n A 1 3 ARG 3 261 261 ARG ARG A . n A 1 4 GLN 4 262 262 GLN GLN A . n A 1 5 ARG 5 263 263 ARG ARG A . n A 1 6 GLU 6 264 264 GLU GLU A . n A 1 7 GLN 7 265 265 GLN GLN A . n A 1 8 GLN 8 266 266 GLN GLN A . n A 1 9 LEU 9 267 267 LEU LEU A . n A 1 10 LEU 10 268 268 LEU LEU A . n A 1 11 GLU 11 269 269 GLU GLU A . n A 1 12 PHE 12 270 270 PHE PHE A . n A 1 13 LEU 13 271 271 LEU LEU A . n A 1 14 ASP 14 272 272 ASP ASP A . n A 1 15 ARG 15 273 273 ARG ARG A . n A 1 16 LEU 16 274 274 LEU LEU A . n A 1 17 THR 17 275 275 THR THR A . n A 1 18 SER 18 276 276 SER SER A . n A 1 19 LEU 19 277 277 LEU LEU A . n A 1 20 LEU 20 278 278 LEU LEU A . n A 1 21 GLU 21 279 279 GLU GLU A . n A 1 22 SER 22 280 280 SER SER A . n A 1 23 LYS 23 281 281 LYS LYS A . n A 1 24 GLY 24 282 282 GLY GLY A . n A 1 25 LYS 25 283 283 LYS LYS A . n A 1 26 VAL 26 284 284 VAL VAL A . n A 1 27 LYS 27 285 285 LYS LYS A . n A 1 28 THR 28 286 286 THR THR A . n A 1 29 LYS 29 287 287 LYS LYS A . n A 1 30 LYS 30 288 288 LYS LYS A . n A 1 31 LEU 31 289 289 LEU LEU A . n A 1 32 GLN 32 290 290 GLN GLN A . n A 1 33 SER 33 291 291 SER SER A . n A 1 34 MET 34 292 292 MET MET A . n A 1 35 LEU 35 293 293 LEU LEU A . n A 1 36 GLY 36 294 294 GLY GLY A . n A 1 37 SER 37 295 295 SER SER A . n A 1 38 LEU 38 296 296 LEU LEU A . n A 1 39 ARG 39 297 297 ARG ARG A . n A 1 40 PRO 40 298 298 PRO PRO A . n A 1 41 ALA 41 299 299 ALA ALA A . n A 1 42 HIS 42 300 300 HIS HIS A . n A 1 43 LEU 43 301 301 LEU LEU A . n A 1 44 GLY 44 302 302 GLY GLY A . n A 1 45 PRO 45 303 303 PRO PRO A . n A 1 46 CYS 46 304 304 CYS CYS A . n A 1 47 SER 47 305 305 SER SER A . n A 1 48 ASP 48 306 306 ASP ASP A . n A 1 49 GLY 49 307 307 GLY GLY A . n A 1 50 HIS 50 308 308 HIS HIS A . n A 1 51 TYR 51 309 309 TYR TYR A . n A 1 52 GLN 52 310 310 GLN GLN A . n A 1 53 SER 53 311 311 SER SER A . n A 1 54 ALA 54 312 312 ALA ALA A . n A 1 55 SER 55 313 313 SER SER A . n A 1 56 GLY 56 314 314 GLY GLY A . n A 1 57 GLN 57 315 315 GLN GLN A . n A 1 58 LYS 58 316 316 LYS LYS A . n A 1 59 VAL 59 317 317 VAL VAL A . n A 1 60 THR 60 318 318 THR THR A . n A 1 61 LEU 61 319 319 LEU LEU A . n A 1 62 GLU 62 320 320 GLU GLU A . n A 1 63 LEU 63 321 321 LEU LEU A . n A 1 64 LYS 64 322 322 LYS LYS A . n A 1 65 PRO 65 323 323 PRO PRO A . n A 1 66 LEU 66 324 324 LEU LEU A . n A 1 67 SER 67 325 325 SER SER A . n A 1 68 THR 68 326 326 THR THR A . n A 1 69 LEU 69 327 327 LEU LEU A . n A 1 70 GLN 70 328 328 GLN GLN A . n A 1 71 PRO 71 329 329 PRO PRO A . n A 1 72 GLY 72 330 330 GLY GLY A . n A 1 73 VAL 73 331 331 VAL VAL A . n A 1 74 ASN 74 332 332 ASN ASN A . n A 1 75 SER 75 333 333 SER SER A . n A 1 76 GLY 76 334 334 GLY GLY A . n A 1 77 ALA 77 335 335 ALA ALA A . n A 1 78 VAL 78 336 336 VAL VAL A . n A 1 79 ILE 79 337 337 ILE ILE A . n A 1 80 LEU 80 338 338 LEU LEU A . n A 1 81 GLY 81 339 339 GLY GLY A . n A 1 82 LYS 82 340 340 LYS LYS A . n A 1 83 VAL 83 341 341 VAL VAL A . n A 1 84 VAL 84 342 342 VAL VAL A . n A 1 85 PHE 85 343 343 PHE PHE A . n A 1 86 SER 86 344 344 SER SER A . n A 1 87 LEU 87 345 345 LEU LEU A . n A 1 88 THR 88 346 346 THR THR A . n A 1 89 THR 89 347 347 THR THR A . n A 1 90 GLU 90 348 348 GLU GLU A . n A 1 91 GLU 91 349 349 GLU GLU A . n A 1 92 LYS 92 350 350 LYS LYS A . n A 1 93 VAL 93 351 351 VAL VAL A . n A 1 94 PRO 94 352 352 PRO PRO A . n A 1 95 PHE 95 353 353 PHE PHE A . n A 1 96 THR 96 354 354 THR THR A . n A 1 97 PHE 97 355 355 PHE PHE A . n A 1 98 GLY 98 356 356 GLY GLY A . n A 1 99 LEU 99 357 357 LEU LEU A . n A 1 100 VAL 100 358 358 VAL VAL A . n A 1 101 ASP 101 359 359 ASP ASP A . n A 1 102 SER 102 360 360 SER SER A . n A 1 103 ASP 103 361 361 ASP ASP A . n A 1 104 GLY 104 362 362 GLY GLY A . n A 1 105 PRO 105 363 363 PRO PRO A . n A 1 106 CYS 106 364 364 CYS CYS A . n A 1 107 TYR 107 365 365 TYR TYR A . n A 1 108 ALA 108 366 366 ALA ALA A . n A 1 109 VAL 109 367 367 VAL VAL A . n A 1 110 MET 110 368 368 MET MET A . n A 1 111 VAL 111 369 369 VAL VAL A . n A 1 112 TYR 112 370 370 TYR TYR A . n A 1 113 ASN 113 371 371 ASN ASN A . n A 1 114 ILE 114 372 372 ILE ILE A . n A 1 115 VAL 115 373 373 VAL VAL A . n A 1 116 GLN 116 374 374 GLN GLN A . n A 1 117 SER 117 375 375 SER SER A . n A 1 118 TRP 118 376 376 TRP TRP A . n A 1 119 GLY 119 377 377 GLY GLY A . n A 1 120 VAL 120 378 378 VAL VAL A . n A 1 121 LEU 121 379 379 LEU LEU A . n A 1 122 ILE 122 380 380 ILE ILE A . n A 1 123 GLY 123 381 381 GLY GLY A . n A 1 124 ASP 124 382 382 ASP ASP A . n A 1 125 SER 125 383 383 SER SER A . n A 1 126 VAL 126 384 384 VAL VAL A . n A 1 127 ALA 127 385 385 ALA ALA A . n A 1 128 ILE 128 386 386 ILE ILE A . n A 1 129 PRO 129 387 387 PRO PRO A . n A 1 130 GLU 130 388 388 GLU GLU A . n A 1 131 PRO 131 389 389 PRO PRO A . n A 1 132 ASN 132 390 390 ASN ASN A . n A 1 133 LEU 133 391 391 LEU LEU A . n A 1 134 ARG 134 392 392 ARG ARG A . n A 1 135 LEU 135 393 393 LEU LEU A . n A 1 136 HIS 136 394 394 HIS HIS A . n A 1 137 ARG 137 395 395 ARG ARG A . n A 1 138 ILE 138 396 396 ILE ILE A . n A 1 139 GLN 139 397 397 GLN GLN A . n A 1 140 HIS 140 398 398 HIS HIS A . n A 1 141 LYS 141 399 399 LYS LYS A . n A 1 142 GLY 142 400 400 GLY GLY A . n A 1 143 LYS 143 401 401 LYS LYS A . n A 1 144 ASP 144 402 402 ASP ASP A . n A 1 145 TYR 145 403 403 TYR TYR A . n A 1 146 SER 146 404 404 SER SER A . n A 1 147 PHE 147 405 405 PHE PHE A . n A 1 148 SER 148 406 406 SER SER A . n A 1 149 SER 149 407 407 SER SER A . n A 1 150 VAL 150 408 408 VAL VAL A . n A 1 151 ARG 151 409 409 ARG ARG A . n A 1 152 VAL 152 410 410 VAL VAL A . n A 1 153 GLU 153 411 411 GLU GLU A . n A 1 154 THR 154 412 412 THR THR A . n A 1 155 PRO 155 413 413 PRO PRO A . n A 1 156 LEU 156 414 414 LEU LEU A . n A 1 157 LEU 157 415 415 LEU LEU A . n A 1 158 LEU 158 416 416 LEU LEU A . n A 1 159 VAL 159 417 417 VAL VAL A . n A 1 160 VAL 160 418 418 VAL VAL A . n A 1 161 ASN 161 419 419 ASN ASN A . n A 1 162 GLY 162 420 420 GLY GLY A . n A 1 163 LYS 163 421 421 LYS LYS A . n A 1 164 PRO 164 422 422 PRO PRO A . n A 1 165 GLN 165 423 423 GLN GLN A . n A 1 166 GLY 166 424 424 GLY GLY A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IOD 1 1425 1425 IOD IOD A . C 3 EDO 1 1426 1426 EDO EDO A . D 4 CL 1 1427 1427 CL CL A . E 2 IOD 1 1428 1428 IOD IOD A . F 2 IOD 1 1429 1429 IOD IOD A . G 5 HOH 1 2001 2001 HOH HOH A . G 5 HOH 2 2002 2002 HOH HOH A . G 5 HOH 3 2003 2003 HOH HOH A . G 5 HOH 4 2004 2004 HOH HOH A . G 5 HOH 5 2005 2005 HOH HOH A . G 5 HOH 6 2006 2006 HOH HOH A . G 5 HOH 7 2007 2007 HOH HOH A . G 5 HOH 8 2008 2008 HOH HOH A . G 5 HOH 9 2009 2009 HOH HOH A . G 5 HOH 10 2010 2010 HOH HOH A . G 5 HOH 11 2011 2011 HOH HOH A . G 5 HOH 12 2012 2012 HOH HOH A . G 5 HOH 13 2013 2013 HOH HOH A . G 5 HOH 14 2014 2014 HOH HOH A . G 5 HOH 15 2015 2015 HOH HOH A . G 5 HOH 16 2016 2016 HOH HOH A . G 5 HOH 17 2017 2017 HOH HOH A . G 5 HOH 18 2018 2018 HOH HOH A . G 5 HOH 19 2019 2019 HOH HOH A . G 5 HOH 20 2020 2020 HOH HOH A . G 5 HOH 21 2021 2021 HOH HOH A . G 5 HOH 22 2022 2022 HOH HOH A . G 5 HOH 23 2023 2023 HOH HOH A . G 5 HOH 24 2024 2024 HOH HOH A . G 5 HOH 25 2025 2025 HOH HOH A . G 5 HOH 26 2026 2026 HOH HOH A . G 5 HOH 27 2027 2027 HOH HOH A . G 5 HOH 28 2028 2028 HOH HOH A . G 5 HOH 29 2029 2029 HOH HOH A . G 5 HOH 30 2030 2030 HOH HOH A . G 5 HOH 31 2031 2031 HOH HOH A . G 5 HOH 32 2032 2032 HOH HOH A . G 5 HOH 33 2033 2033 HOH HOH A . G 5 HOH 34 2034 2034 HOH HOH A . G 5 HOH 35 2035 2035 HOH HOH A . G 5 HOH 36 2036 2036 HOH HOH A . G 5 HOH 37 2037 2037 HOH HOH A . G 5 HOH 38 2038 2038 HOH HOH A . G 5 HOH 39 2039 2039 HOH HOH A . G 5 HOH 40 2040 2040 HOH HOH A . G 5 HOH 41 2041 2041 HOH HOH A . G 5 HOH 42 2042 2042 HOH HOH A . G 5 HOH 43 2043 2043 HOH HOH A . G 5 HOH 44 2044 2044 HOH HOH A . G 5 HOH 45 2045 2045 HOH HOH A . G 5 HOH 46 2046 2046 HOH HOH A . G 5 HOH 47 2047 2047 HOH HOH A . G 5 HOH 48 2048 2048 HOH HOH A . G 5 HOH 49 2049 2049 HOH HOH A . G 5 HOH 50 2050 2050 HOH HOH A . G 5 HOH 51 2051 2051 HOH HOH A . G 5 HOH 52 2052 2052 HOH HOH A . G 5 HOH 53 2053 2053 HOH HOH A . G 5 HOH 54 2054 2054 HOH HOH A . G 5 HOH 55 2055 2055 HOH HOH A . G 5 HOH 56 2056 2056 HOH HOH A . G 5 HOH 57 2057 2057 HOH HOH A . G 5 HOH 58 2058 2058 HOH HOH A . G 5 HOH 59 2059 2059 HOH HOH A . G 5 HOH 60 2060 2060 HOH HOH A . G 5 HOH 61 2061 2061 HOH HOH A . G 5 HOH 62 2062 2062 HOH HOH A . G 5 HOH 63 2063 2063 HOH HOH A . G 5 HOH 64 2064 2064 HOH HOH A . G 5 HOH 65 2065 2065 HOH HOH A . G 5 HOH 66 2066 2066 HOH HOH A . G 5 HOH 67 2067 2067 HOH HOH A . G 5 HOH 68 2068 2068 HOH HOH A . G 5 HOH 69 2069 2069 HOH HOH A . G 5 HOH 70 2070 2070 HOH HOH A . G 5 HOH 71 2071 2071 HOH HOH A . G 5 HOH 72 2072 2072 HOH HOH A . G 5 HOH 73 2073 2073 HOH HOH A . G 5 HOH 74 2074 2074 HOH HOH A . G 5 HOH 75 2075 2075 HOH HOH A . G 5 HOH 76 2076 2076 HOH HOH A . G 5 HOH 77 2077 2077 HOH HOH A . G 5 HOH 78 2078 2078 HOH HOH A . G 5 HOH 79 2079 2079 HOH HOH A . G 5 HOH 80 2080 2080 HOH HOH A . G 5 HOH 81 2081 2081 HOH HOH A . G 5 HOH 82 2082 2082 HOH HOH A . G 5 HOH 83 2083 2083 HOH HOH A . G 5 HOH 84 2084 2084 HOH HOH A . G 5 HOH 85 2085 2085 HOH HOH A . G 5 HOH 86 2086 2086 HOH HOH A . G 5 HOH 87 2087 2087 HOH HOH A . G 5 HOH 88 2088 2088 HOH HOH A . G 5 HOH 89 2089 2089 HOH HOH A . G 5 HOH 90 2090 2090 HOH HOH A . G 5 HOH 91 2091 2091 HOH HOH A . G 5 HOH 92 2092 2092 HOH HOH A . G 5 HOH 93 2093 2093 HOH HOH A . G 5 HOH 94 2094 2094 HOH HOH A . G 5 HOH 95 2095 2095 HOH HOH A . G 5 HOH 96 2096 2096 HOH HOH A . G 5 HOH 97 2097 2097 HOH HOH A . G 5 HOH 98 2098 2098 HOH HOH A . G 5 HOH 99 2099 2099 HOH HOH A . G 5 HOH 100 2100 2100 HOH HOH A . G 5 HOH 101 2101 2101 HOH HOH A . G 5 HOH 102 2102 2102 HOH HOH A . G 5 HOH 103 2103 2103 HOH HOH A . G 5 HOH 104 2104 2104 HOH HOH A . G 5 HOH 105 2105 2105 HOH HOH A . G 5 HOH 106 2106 2106 HOH HOH A . G 5 HOH 107 2107 2107 HOH HOH A . G 5 HOH 108 2108 2108 HOH HOH A . G 5 HOH 109 2109 2109 HOH HOH A . G 5 HOH 110 2110 2110 HOH HOH A . G 5 HOH 111 2111 2111 HOH HOH A . G 5 HOH 112 2112 2112 HOH HOH A . G 5 HOH 113 2113 2113 HOH HOH A . G 5 HOH 114 2114 2114 HOH HOH A . G 5 HOH 115 2115 2115 HOH HOH A . G 5 HOH 116 2116 2116 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-11-17 2 'Structure model' 1 1 2012-03-14 3 'Structure model' 1 2 2012-03-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 2 'Structure model' 'Structure summary' 3 3 'Structure model' Other # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 1.9395 _pdbx_refine_tls.origin_y -4.0812 _pdbx_refine_tls.origin_z -3.7795 _pdbx_refine_tls.T[1][1] 0.0110 _pdbx_refine_tls.T[2][2] 0.0164 _pdbx_refine_tls.T[3][3] 0.0608 _pdbx_refine_tls.T[1][2] 0.0080 _pdbx_refine_tls.T[1][3] 0.0113 _pdbx_refine_tls.T[2][3] 0.0273 _pdbx_refine_tls.L[1][1] 2.8531 _pdbx_refine_tls.L[2][2] 3.1681 _pdbx_refine_tls.L[3][3] 2.3567 _pdbx_refine_tls.L[1][2] 0.7711 _pdbx_refine_tls.L[1][3] -0.2091 _pdbx_refine_tls.L[2][3] -1.3651 _pdbx_refine_tls.S[1][1] 0.0603 _pdbx_refine_tls.S[1][2] 0.1698 _pdbx_refine_tls.S[1][3] 0.3037 _pdbx_refine_tls.S[2][1] 0.0850 _pdbx_refine_tls.S[2][2] 0.0397 _pdbx_refine_tls.S[2][3] 0.1471 _pdbx_refine_tls.S[3][1] -0.1543 _pdbx_refine_tls.S[3][2] -0.0763 _pdbx_refine_tls.S[3][3] -0.1000 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 259 _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 424 _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.5.0110 ? 1 MOSFLM 'data reduction' . ? 2 SCALA 'data scaling' . ? 3 PHASER phasing . ? 4 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 409 ? ? CZ A ARG 409 ? ? NH1 A ARG 409 ? ? 123.35 120.30 3.05 0.50 N 2 1 NE A ARG 409 ? ? CZ A ARG 409 ? ? NH2 A ARG 409 ? ? 116.48 120.30 -3.82 0.50 N # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A SER -1 ? OG ? A SER 1 OG 2 1 Y 1 A GLN 262 ? CG ? A GLN 4 CG 3 1 Y 1 A GLN 262 ? CD ? A GLN 4 CD 4 1 Y 1 A GLN 262 ? OE1 ? A GLN 4 OE1 5 1 Y 1 A GLN 262 ? NE2 ? A GLN 4 NE2 6 1 Y 1 A LYS 285 ? CG ? A LYS 27 CG 7 1 Y 1 A LYS 285 ? CD ? A LYS 27 CD 8 1 Y 1 A LYS 285 ? CE ? A LYS 27 CE 9 1 Y 1 A LYS 285 ? NZ ? A LYS 27 NZ 10 1 Y 1 A SER 305 ? OG ? A SER 47 OG 11 1 Y 1 A ASP 306 ? CG ? A ASP 48 CG 12 1 Y 1 A ASP 306 ? OD1 ? A ASP 48 OD1 13 1 Y 1 A ASP 306 ? OD2 ? A ASP 48 OD2 14 1 Y 1 A HIS 308 ? CG ? A HIS 50 CG 15 1 Y 1 A HIS 308 ? ND1 ? A HIS 50 ND1 16 1 Y 1 A HIS 308 ? CD2 ? A HIS 50 CD2 17 1 Y 1 A HIS 308 ? CE1 ? A HIS 50 CE1 18 1 Y 1 A HIS 308 ? NE2 ? A HIS 50 NE2 19 1 Y 1 A GLN 310 ? CG ? A GLN 52 CG 20 1 Y 1 A GLN 310 ? CD ? A GLN 52 CD 21 1 Y 1 A GLN 310 ? OE1 ? A GLN 52 OE1 22 1 Y 1 A GLN 310 ? NE2 ? A GLN 52 NE2 23 1 Y 1 A SER 311 ? OG ? A SER 53 OG 24 1 Y 1 A SER 313 ? OG ? A SER 55 OG 25 1 Y 1 A GLN 315 ? CG ? A GLN 57 CG 26 1 Y 1 A GLN 315 ? CD ? A GLN 57 CD 27 1 Y 1 A GLN 315 ? OE1 ? A GLN 57 OE1 28 1 Y 1 A GLN 315 ? NE2 ? A GLN 57 NE2 29 1 Y 1 A LYS 316 ? CG ? A LYS 58 CG 30 1 Y 1 A LYS 316 ? CD ? A LYS 58 CD 31 1 Y 1 A LYS 316 ? CE ? A LYS 58 CE 32 1 Y 1 A LYS 316 ? NZ ? A LYS 58 NZ 33 1 Y 1 A VAL 317 ? CG1 ? A VAL 59 CG1 34 1 Y 1 A VAL 317 ? CG2 ? A VAL 59 CG2 35 1 Y 1 A LYS 322 ? CD ? A LYS 64 CD 36 1 Y 1 A LYS 322 ? CE ? A LYS 64 CE 37 1 Y 1 A LYS 322 ? NZ ? A LYS 64 NZ 38 1 Y 1 A LYS 421 ? CD ? A LYS 163 CD 39 1 Y 1 A LYS 421 ? CE ? A LYS 163 CE 40 1 Y 1 A LYS 421 ? NZ ? A LYS 163 NZ # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'IODIDE ION' IOD 3 1,2-ETHANEDIOL EDO 4 'CHLORIDE ION' CL 5 water HOH #