data_2XVZ # _entry.id 2XVZ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2XVZ PDBE EBI-45921 WWPDB D_1290045921 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2XVZ _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2010-10-28 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Romao, C.V.' 1 'Lobo, S.A.L.' 2 'Carrondo, M.A.' 3 'Saraiva, L.M.' 4 'Matias, P.M.' 5 # _citation.id primary _citation.title 'Evolution in a Family of Chelatases Facilitated by the Introduction of Active Site Asymmetry and Protein Oligomerization.' _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 108 _citation.page_first 97 _citation.page_last ? _citation.year 2011 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21173279 _citation.pdbx_database_id_DOI 10.1073/PNAS.1014298108 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Romao, C.V.' 1 primary 'Ladakis, D.' 2 primary 'Lobo, S.A.L.' 3 primary 'Carrondo, M.A.' 4 primary 'Brindley, A.A.' 5 primary 'Deery, E.' 6 primary 'Matias, P.M.' 7 primary 'Pickersgill, R.W.' 8 primary 'Saraiva, L.M.' 9 primary 'Warren, M.J.' 10 # _cell.entry_id 2XVZ _cell.length_a 121.441 _cell.length_b 121.441 _cell.length_c 121.100 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2XVZ _symmetry.space_group_name_H-M 'I 4 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'CHELATASE, PUTATIVE' 28767.809 1 4.99.1.3 ? 'RESIDUES 29-297' ? 2 non-polymer syn 'PROTOPORPHYRIN IX CONTAINING FE' 616.487 1 ? ? ? ? 3 non-polymer syn 'COBALT (II) ION' 58.933 1 ? ? ? ? 4 non-polymer syn 'SULFATE ION' 96.063 8 ? ? ? ? 5 non-polymer syn GLYCEROL 92.094 3 ? ? ? ? 6 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 7 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 8 non-polymer syn 'PEROXIDE ION' 31.999 1 ? ? ? ? 9 water nat water 18.015 112 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'COBALT CHELATASE CBIK' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GHGAPKAQKTGILLVAFGTSVEEARPALDKMGDRVRAAHPDIPVRWAYTAKMIRAKLRAEGIAAPSPAEALAGMAEEGFT HVAVQSLHTIPGEEFHGLLETAHAFQGLPKGLTRVSVGLPLIGTTADAEAVAEALVASLPADRKPGEPVVFMGHGTPHPA DICYPGLQYYLWRLDPDLLVGTVEGSPSFDNVMAELDVRKAKRVWLMPLMAVAGDHARNDMAGDEDDSWTSQLARRGIEA KPVLHGTAESDAVAAIWLRHLDDALARLN ; _entity_poly.pdbx_seq_one_letter_code_can ;GHGAPKAQKTGILLVAFGTSVEEARPALDKMGDRVRAAHPDIPVRWAYTAKMIRAKLRAEGIAAPSPAEALAGMAEEGFT HVAVQSLHTIPGEEFHGLLETAHAFQGLPKGLTRVSVGLPLIGTTADAEAVAEALVASLPADRKPGEPVVFMGHGTPHPA DICYPGLQYYLWRLDPDLLVGTVEGSPSFDNVMAELDVRKAKRVWLMPLMAVAGDHARNDMAGDEDDSWTSQLARRGIEA KPVLHGTAESDAVAAIWLRHLDDALARLN ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 HIS n 1 3 GLY n 1 4 ALA n 1 5 PRO n 1 6 LYS n 1 7 ALA n 1 8 GLN n 1 9 LYS n 1 10 THR n 1 11 GLY n 1 12 ILE n 1 13 LEU n 1 14 LEU n 1 15 VAL n 1 16 ALA n 1 17 PHE n 1 18 GLY n 1 19 THR n 1 20 SER n 1 21 VAL n 1 22 GLU n 1 23 GLU n 1 24 ALA n 1 25 ARG n 1 26 PRO n 1 27 ALA n 1 28 LEU n 1 29 ASP n 1 30 LYS n 1 31 MET n 1 32 GLY n 1 33 ASP n 1 34 ARG n 1 35 VAL n 1 36 ARG n 1 37 ALA n 1 38 ALA n 1 39 HIS n 1 40 PRO n 1 41 ASP n 1 42 ILE n 1 43 PRO n 1 44 VAL n 1 45 ARG n 1 46 TRP n 1 47 ALA n 1 48 TYR n 1 49 THR n 1 50 ALA n 1 51 LYS n 1 52 MET n 1 53 ILE n 1 54 ARG n 1 55 ALA n 1 56 LYS n 1 57 LEU n 1 58 ARG n 1 59 ALA n 1 60 GLU n 1 61 GLY n 1 62 ILE n 1 63 ALA n 1 64 ALA n 1 65 PRO n 1 66 SER n 1 67 PRO n 1 68 ALA n 1 69 GLU n 1 70 ALA n 1 71 LEU n 1 72 ALA n 1 73 GLY n 1 74 MET n 1 75 ALA n 1 76 GLU n 1 77 GLU n 1 78 GLY n 1 79 PHE n 1 80 THR n 1 81 HIS n 1 82 VAL n 1 83 ALA n 1 84 VAL n 1 85 GLN n 1 86 SER n 1 87 LEU n 1 88 HIS n 1 89 THR n 1 90 ILE n 1 91 PRO n 1 92 GLY n 1 93 GLU n 1 94 GLU n 1 95 PHE n 1 96 HIS n 1 97 GLY n 1 98 LEU n 1 99 LEU n 1 100 GLU n 1 101 THR n 1 102 ALA n 1 103 HIS n 1 104 ALA n 1 105 PHE n 1 106 GLN n 1 107 GLY n 1 108 LEU n 1 109 PRO n 1 110 LYS n 1 111 GLY n 1 112 LEU n 1 113 THR n 1 114 ARG n 1 115 VAL n 1 116 SER n 1 117 VAL n 1 118 GLY n 1 119 LEU n 1 120 PRO n 1 121 LEU n 1 122 ILE n 1 123 GLY n 1 124 THR n 1 125 THR n 1 126 ALA n 1 127 ASP n 1 128 ALA n 1 129 GLU n 1 130 ALA n 1 131 VAL n 1 132 ALA n 1 133 GLU n 1 134 ALA n 1 135 LEU n 1 136 VAL n 1 137 ALA n 1 138 SER n 1 139 LEU n 1 140 PRO n 1 141 ALA n 1 142 ASP n 1 143 ARG n 1 144 LYS n 1 145 PRO n 1 146 GLY n 1 147 GLU n 1 148 PRO n 1 149 VAL n 1 150 VAL n 1 151 PHE n 1 152 MET n 1 153 GLY n 1 154 HIS n 1 155 GLY n 1 156 THR n 1 157 PRO n 1 158 HIS n 1 159 PRO n 1 160 ALA n 1 161 ASP n 1 162 ILE n 1 163 CYS n 1 164 TYR n 1 165 PRO n 1 166 GLY n 1 167 LEU n 1 168 GLN n 1 169 TYR n 1 170 TYR n 1 171 LEU n 1 172 TRP n 1 173 ARG n 1 174 LEU n 1 175 ASP n 1 176 PRO n 1 177 ASP n 1 178 LEU n 1 179 LEU n 1 180 VAL n 1 181 GLY n 1 182 THR n 1 183 VAL n 1 184 GLU n 1 185 GLY n 1 186 SER n 1 187 PRO n 1 188 SER n 1 189 PHE n 1 190 ASP n 1 191 ASN n 1 192 VAL n 1 193 MET n 1 194 ALA n 1 195 GLU n 1 196 LEU n 1 197 ASP n 1 198 VAL n 1 199 ARG n 1 200 LYS n 1 201 ALA n 1 202 LYS n 1 203 ARG n 1 204 VAL n 1 205 TRP n 1 206 LEU n 1 207 MET n 1 208 PRO n 1 209 LEU n 1 210 MET n 1 211 ALA n 1 212 VAL n 1 213 ALA n 1 214 GLY n 1 215 ASP n 1 216 HIS n 1 217 ALA n 1 218 ARG n 1 219 ASN n 1 220 ASP n 1 221 MET n 1 222 ALA n 1 223 GLY n 1 224 ASP n 1 225 GLU n 1 226 ASP n 1 227 ASP n 1 228 SER n 1 229 TRP n 1 230 THR n 1 231 SER n 1 232 GLN n 1 233 LEU n 1 234 ALA n 1 235 ARG n 1 236 ARG n 1 237 GLY n 1 238 ILE n 1 239 GLU n 1 240 ALA n 1 241 LYS n 1 242 PRO n 1 243 VAL n 1 244 LEU n 1 245 HIS n 1 246 GLY n 1 247 THR n 1 248 ALA n 1 249 GLU n 1 250 SER n 1 251 ASP n 1 252 ALA n 1 253 VAL n 1 254 ALA n 1 255 ALA n 1 256 ILE n 1 257 TRP n 1 258 LEU n 1 259 ARG n 1 260 HIS n 1 261 LEU n 1 262 ASP n 1 263 ASP n 1 264 ALA n 1 265 LEU n 1 266 ALA n 1 267 ARG n 1 268 LEU n 1 269 ASN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain HILDENBOROUGH _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'DESULFOVIBRIO VULGARIS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 882 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21 GOLD (DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector PET-28 _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q72EC8_DESVH _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession Q72EC8 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2XVZ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 269 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q72EC8 _struct_ref_seq.db_align_beg 29 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 297 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 269 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CO non-polymer . 'COBALT (II) ION' ? 'Co 2' 58.933 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HEM non-polymer . 'PROTOPORPHYRIN IX CONTAINING FE' HEME 'C34 H32 Fe N4 O4' 616.487 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PER non-polymer . 'PEROXIDE ION' ? 'O2 -2' 31.999 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2XVZ _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.7 _exptl_crystal.density_percent_sol 66.7 _exptl_crystal.description NONE # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details ;CRYSTALLIZATION SOLUTION: 100MM TRIS-HCL PH8.5, 2M AMMONIUM SULFATE. THE DROP WAS MADE BY ADDING 1UL OF PROTEIN PLUS 1.8UL OF CRYSTALLIZATION SOLUTION AND 0.2UL OF 1M COBALT CHLORIDE. ; # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2007-07-12 _diffrn_detector.details MIRRORS # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'SI (111)' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.42363 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE BM14' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline BM14 _diffrn_source.pdbx_wavelength 1.42363 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2XVZ _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 49.45 _reflns.d_resolution_high 2.40 _reflns.number_obs 18046 _reflns.number_all ? _reflns.percent_possible_obs 97.5 _reflns.pdbx_Rmerge_I_obs 0.067 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 10.9 _reflns.B_iso_Wilson_estimate 36.2 _reflns.pdbx_redundancy 7.7 # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.40 _reflns_shell.d_res_low 2.53 _reflns_shell.percent_possible_all 96.6 _reflns_shell.Rmerge_I_obs 0.411 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 1.90 _reflns_shell.pdbx_redundancy 7.6 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2XVZ _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 17055 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 85.75 _refine.ls_d_res_high 2.40 _refine.ls_percent_reflns_obs 99.58 _refine.ls_R_factor_obs 0.17211 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.16960 _refine.ls_R_factor_R_free 0.22022 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 917 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.950 _refine.correlation_coeff_Fo_to_Fc_free 0.922 _refine.B_iso_mean 27.804 _refine.aniso_B[1][1] -0.15 _refine.aniso_B[2][2] -0.15 _refine.aniso_B[3][3] 0.30 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. THE SIDE-CHAINS OF THE AMINO ACID RESIDUES- GLU22, GLU23, ARG25, LYS30, LYS51, MET52 WERE MODELLED WITH 0.5 OF OCCUPANCY DUE TO THE LACK OF ELECTRON DENSITY PROBABLY DUE TO DISORDER. THE FOLLOWING AMINO ACID RESIDUES WERE MODELLED WITH DOUBLE CONFORMATION- ARG173, MET193. ; _refine.pdbx_starting_model NONE _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.215 _refine.pdbx_overall_ESU_R_Free 0.194 _refine.overall_SU_ML 0.125 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 5.299 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1984 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 106 _refine_hist.number_atoms_solvent 112 _refine_hist.number_atoms_total 2202 _refine_hist.d_res_high 2.40 _refine_hist.d_res_low 85.75 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.020 0.022 ? 2144 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.989 2.051 ? 2925 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.792 5.000 ? 262 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 35.638 23.059 ? 85 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 16.795 15.000 ? 322 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 18.993 15.000 ? 17 'X-RAY DIFFRACTION' ? r_chiral_restr 0.115 0.200 ? 312 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.010 0.021 ? 1609 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.082 1.500 ? 1313 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 2.070 2.000 ? 2096 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 3.308 3.000 ? 831 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 5.220 4.500 ? 829 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.400 _refine_ls_shell.d_res_low 2.462 _refine_ls_shell.number_reflns_R_work 1205 _refine_ls_shell.R_factor_R_work 0.215 _refine_ls_shell.percent_reflns_obs 98.23 _refine_ls_shell.R_factor_R_free 0.266 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 74 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 2XVZ _struct.title 'Cobalt chelatase CbiK (periplasmatic) from Desulvobrio vulgaris Hildenborough (co-crystallized with cobalt)' _struct.pdbx_descriptor 'CHELATASE, PUTATIVE (E.C.4.99.1.3)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2XVZ _struct_keywords.pdbx_keywords 'METAL BINDING PROTEIN' _struct_keywords.text 'METAL BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 4 ? G N N 5 ? H N N 5 ? I N N 5 ? J N N 4 ? K N N 4 ? L N N 4 ? M N N 4 ? N N N 4 ? O N N 6 ? P N N 7 ? Q N N 8 ? R N N 9 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ARG A 25 ? HIS A 39 ? ARG A 25 HIS A 39 1 ? 15 HELX_P HELX_P2 2 ALA A 50 ? GLU A 60 ? ALA A 50 GLU A 60 1 ? 11 HELX_P HELX_P3 3 SER A 66 ? GLU A 77 ? SER A 66 GLU A 77 1 ? 12 HELX_P HELX_P4 4 GLY A 92 ? GLN A 106 ? GLY A 92 GLN A 106 1 ? 15 HELX_P HELX_P5 5 THR A 124 ? LEU A 139 ? THR A 124 LEU A 139 1 ? 16 HELX_P HELX_P6 6 HIS A 158 ? ASP A 161 ? HIS A 158 ASP A 161 5 ? 4 HELX_P HELX_P7 7 ILE A 162 ? ARG A 173 ? ILE A 162 ARG A 173 1 ? 12 HELX_P HELX_P8 8 SER A 188 ? ARG A 199 ? SER A 188 ARG A 199 1 ? 12 HELX_P HELX_P9 9 GLY A 214 ? ASP A 220 ? GLY A 214 ASP A 220 1 ? 7 HELX_P HELX_P10 10 SER A 228 ? ARG A 236 ? SER A 228 ARG A 236 1 ? 9 HELX_P HELX_P11 11 GLY A 246 ? GLU A 249 ? GLY A 246 GLU A 249 5 ? 4 HELX_P HELX_P12 12 SER A 250 ? ARG A 267 ? SER A 250 ARG A 267 1 ? 18 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc1 metalc ? ? A HIS 96 NE2 ? ? ? 1_555 B HEM . FE ? ? A HIS 96 A HEM 1270 1_555 ? ? ? ? ? ? ? 1.959 ? metalc2 metalc ? ? B HEM . FE ? ? ? 1_555 A HIS 96 NE2 ? ? A HEM 1270 A HIS 96 5_555 ? ? ? ? ? ? ? 2.257 ? metalc3 metalc ? ? C CO . CO ? ? ? 1_555 Q PER . O2 ? ? A CO 1271 A PER 1285 1_555 ? ? ? ? ? ? ? 2.624 ? metalc4 metalc ? ? C CO . CO ? ? ? 1_555 A HIS 216 NE2 ? ? A CO 1271 A HIS 216 1_555 ? ? ? ? ? ? ? 2.044 ? metalc5 metalc ? ? C CO . CO ? ? ? 1_555 Q PER . O1 ? ? A CO 1271 A PER 1285 1_555 ? ? ? ? ? ? ? 1.801 ? metalc6 metalc ? ? C CO . CO ? ? ? 1_555 R HOH . O ? ? A CO 1271 A HOH 2106 1_555 ? ? ? ? ? ? ? 2.187 ? metalc7 metalc ? ? C CO . CO ? ? ? 1_555 A HIS 154 NE2 ? ? A CO 1271 A HIS 154 1_555 ? ? ? ? ? ? ? 2.042 ? metalc8 metalc ? ? E SO4 . O2 ? ? ? 1_555 O NA . NA ? ? A SO4 1273 A NA 1283 1_555 ? ? ? ? ? ? ? 3.166 ? metalc9 metalc ? ? O NA . NA ? ? ? 1_555 A TYR 164 OH ? ? A NA 1283 A TYR 164 1_555 ? ? ? ? ? ? ? 2.753 ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id SER _struct_mon_prot_cis.label_seq_id 186 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id SER _struct_mon_prot_cis.auth_seq_id 186 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 187 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 187 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 1.29 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 4 ? AB ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? parallel AA 2 3 ? parallel AA 3 4 ? parallel AB 1 2 ? parallel AB 2 3 ? parallel AB 3 4 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 VAL A 44 ? TYR A 48 ? VAL A 44 TYR A 48 AA 2 THR A 10 ? ALA A 16 ? THR A 10 ALA A 16 AA 3 HIS A 81 ? SER A 86 ? HIS A 81 SER A 86 AA 4 ARG A 114 ? GLY A 118 ? ARG A 114 GLY A 118 AB 1 LEU A 178 ? THR A 182 ? LEU A 178 THR A 182 AB 2 VAL A 149 ? GLY A 153 ? VAL A 149 GLY A 153 AB 3 ARG A 203 ? PRO A 208 ? ARG A 203 PRO A 208 AB 4 GLU A 239 ? PRO A 242 ? GLU A 239 PRO A 242 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N ARG A 45 ? N ARG A 45 O ILE A 12 ? O ILE A 12 AA 2 3 N GLY A 11 ? N GLY A 11 O HIS A 81 ? O HIS A 81 AA 3 4 N VAL A 82 ? N VAL A 82 O ARG A 114 ? O ARG A 114 AB 1 2 N LEU A 179 ? N LEU A 179 O VAL A 149 ? O VAL A 149 AB 2 3 N VAL A 150 ? N VAL A 150 O TRP A 205 ? O TRP A 205 AB 3 4 N VAL A 204 ? N VAL A 204 O GLU A 239 ? O GLU A 239 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 9 'BINDING SITE FOR RESIDUE HEM A 1270' AC2 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE CO A 1271' AC3 Software ? ? ? ? 8 'BINDING SITE FOR RESIDUE SO4 A 1272' AC4 Software ? ? ? ? 8 'BINDING SITE FOR RESIDUE SO4 A 1273' AC5 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE SO4 A 1274' AC6 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE GOL A 1275' AC7 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE GOL A 1276' AC8 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE GOL A 1277' AC9 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE SO4 A 1278' BC1 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE SO4 A 1279' BC2 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE SO4 A 1280' BC3 Software ? ? ? ? 7 'BINDING SITE FOR RESIDUE SO4 A 1281' BC4 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE SO4 A 1282' BC5 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE NA A 1283' BC6 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE PER A 1285' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 9 PRO A 91 ? PRO A 91 . ? 5_555 ? 2 AC1 9 HIS A 96 ? HIS A 96 . ? 1_555 ? 3 AC1 9 HIS A 96 ? HIS A 96 . ? 5_555 ? 4 AC1 9 LEU A 99 ? LEU A 99 . ? 5_555 ? 5 AC1 9 LEU A 99 ? LEU A 99 . ? 1_555 ? 6 AC1 9 LEU A 119 ? LEU A 119 . ? 1_555 ? 7 AC1 9 PRO A 159 ? PRO A 159 . ? 5_555 ? 8 AC1 9 HOH R . ? HOH A 2040 . ? 5_555 ? 9 AC1 9 HOH R . ? HOH A 2105 . ? 1_555 ? 10 AC2 5 HIS A 154 ? HIS A 154 . ? 1_555 ? 11 AC2 5 GLU A 184 ? GLU A 184 . ? 1_555 ? 12 AC2 5 HIS A 216 ? HIS A 216 . ? 1_555 ? 13 AC2 5 PER Q . ? PER A 1285 . ? 1_555 ? 14 AC2 5 HOH R . ? HOH A 2106 . ? 1_555 ? 15 AC3 8 GLY A 92 ? GLY A 92 . ? 1_555 ? 16 AC3 8 GLU A 93 ? GLU A 93 . ? 1_555 ? 17 AC3 8 GLU A 94 ? GLU A 94 . ? 1_555 ? 18 AC3 8 THR A 156 ? THR A 156 . ? 1_555 ? 19 AC3 8 HIS A 158 ? HIS A 158 . ? 1_555 ? 20 AC3 8 HOH R . ? HOH A 2037 . ? 1_555 ? 21 AC3 8 HOH R . ? HOH A 2055 . ? 1_555 ? 22 AC3 8 HOH R . ? HOH A 2107 . ? 1_555 ? 23 AC4 8 PHE A 17 ? PHE A 17 . ? 1_555 ? 24 AC4 8 LEU A 87 ? LEU A 87 . ? 1_555 ? 25 AC4 8 HIS A 88 ? HIS A 88 . ? 1_555 ? 26 AC4 8 THR A 89 ? THR A 89 . ? 1_555 ? 27 AC4 8 MET A 210 ? MET A 210 . ? 1_555 ? 28 AC4 8 ALA A 211 ? ALA A 211 . ? 1_555 ? 29 AC4 8 NA O . ? NA A 1283 . ? 1_555 ? 30 AC4 8 HOH R . ? HOH A 2108 . ? 1_555 ? 31 AC5 5 ARG A 114 ? ARG A 114 . ? 1_555 ? 32 AC5 5 VAL A 115 ? VAL A 115 . ? 1_555 ? 33 AC5 5 SER A 116 ? SER A 116 . ? 1_555 ? 34 AC5 5 VAL A 117 ? VAL A 117 . ? 1_555 ? 35 AC5 5 ARG A 267 ? ARG A 267 . ? 1_555 ? 36 AC6 5 LEU A 174 ? LEU A 174 . ? 1_555 ? 37 AC6 5 ASP A 175 ? ASP A 175 . ? 1_555 ? 38 AC6 5 ASP A 197 ? ASP A 197 . ? 4_555 ? 39 AC6 5 ARG A 236 ? ARG A 236 . ? 4_555 ? 40 AC6 5 HOH R . ? HOH A 2065 . ? 1_555 ? 41 AC7 3 TRP A 172 ? TRP A 172 . ? 1_555 ? 42 AC7 3 PRO A 176 ? PRO A 176 . ? 1_555 ? 43 AC7 3 ARG A 199 ? ARG A 199 . ? 1_555 ? 44 AC8 4 THR A 49 ? THR A 49 . ? 1_555 ? 45 AC8 4 LYS A 51 ? LYS A 51 . ? 1_555 ? 46 AC8 4 MET A 52 ? MET A 52 . ? 1_555 ? 47 AC8 4 GLU A 94 ? GLU A 94 . ? 1_555 ? 48 AC9 3 PRO A 140 ? PRO A 140 . ? 1_555 ? 49 AC9 3 ALA A 141 ? ALA A 141 . ? 1_555 ? 50 AC9 3 HOH R . ? HOH A 2109 . ? 1_555 ? 51 BC1 3 SER A 250 ? SER A 250 . ? 1_555 ? 52 BC1 3 ASP A 251 ? ASP A 251 . ? 1_555 ? 53 BC1 3 ALA A 252 ? ALA A 252 . ? 1_555 ? 54 BC2 6 THR A 19 ? THR A 19 . ? 1_555 ? 55 BC2 6 SER A 20 ? SER A 20 . ? 1_555 ? 56 BC2 6 VAL A 21 ? VAL A 21 . ? 1_555 ? 57 BC2 6 ASP A 215 ? ASP A 215 . ? 1_555 ? 58 BC2 6 SO4 M . ? SO4 A 1281 . ? 1_555 ? 59 BC2 6 HOH R . ? HOH A 2110 . ? 1_555 ? 60 BC3 7 GLY A 214 ? GLY A 214 . ? 1_555 ? 61 BC3 7 ASP A 215 ? ASP A 215 . ? 1_555 ? 62 BC3 7 HIS A 216 ? HIS A 216 . ? 1_555 ? 63 BC3 7 SO4 L . ? SO4 A 1280 . ? 1_555 ? 64 BC3 7 HOH R . ? HOH A 2106 . ? 1_555 ? 65 BC3 7 HOH R . ? HOH A 2110 . ? 1_555 ? 66 BC3 7 HOH R . ? HOH A 2111 . ? 1_555 ? 67 BC4 4 PRO A 43 ? PRO A 43 . ? 1_555 ? 68 BC4 4 VAL A 44 ? VAL A 44 . ? 1_555 ? 69 BC4 4 ARG A 45 ? ARG A 45 . ? 1_555 ? 70 BC4 4 HOH R . ? HOH A 2112 . ? 1_555 ? 71 BC5 4 GLY A 153 ? GLY A 153 . ? 1_555 ? 72 BC5 4 HIS A 154 ? HIS A 154 . ? 1_555 ? 73 BC5 4 TYR A 164 ? TYR A 164 . ? 1_555 ? 74 BC5 4 SO4 E . ? SO4 A 1273 . ? 1_555 ? 75 BC6 4 HIS A 154 ? HIS A 154 . ? 1_555 ? 76 BC6 4 GLU A 184 ? GLU A 184 . ? 1_555 ? 77 BC6 4 HIS A 216 ? HIS A 216 . ? 1_555 ? 78 BC6 4 CO C . ? CO A 1271 . ? 1_555 ? # _database_PDB_matrix.entry_id 2XVZ _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2XVZ _atom_sites.fract_transf_matrix[1][1] 0.008234 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.008234 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008258 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL CO FE N NA O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 ? ? ? A . n A 1 2 HIS 2 2 ? ? ? A . n A 1 3 GLY 3 3 ? ? ? A . n A 1 4 ALA 4 4 ? ? ? A . n A 1 5 PRO 5 5 ? ? ? A . n A 1 6 LYS 6 6 ? ? ? A . n A 1 7 ALA 7 7 7 ALA ALA A . n A 1 8 GLN 8 8 8 GLN GLN A . n A 1 9 LYS 9 9 9 LYS LYS A . n A 1 10 THR 10 10 10 THR THR A . n A 1 11 GLY 11 11 11 GLY GLY A . n A 1 12 ILE 12 12 12 ILE ILE A . n A 1 13 LEU 13 13 13 LEU LEU A . n A 1 14 LEU 14 14 14 LEU LEU A . n A 1 15 VAL 15 15 15 VAL VAL A . n A 1 16 ALA 16 16 16 ALA ALA A . n A 1 17 PHE 17 17 17 PHE PHE A . n A 1 18 GLY 18 18 18 GLY GLY A . n A 1 19 THR 19 19 19 THR THR A . n A 1 20 SER 20 20 20 SER SER A . n A 1 21 VAL 21 21 21 VAL VAL A . n A 1 22 GLU 22 22 22 GLU GLU A . n A 1 23 GLU 23 23 23 GLU GLU A . n A 1 24 ALA 24 24 24 ALA ALA A . n A 1 25 ARG 25 25 25 ARG ARG A . n A 1 26 PRO 26 26 26 PRO PRO A . n A 1 27 ALA 27 27 27 ALA ALA A . n A 1 28 LEU 28 28 28 LEU LEU A . n A 1 29 ASP 29 29 29 ASP ASP A . n A 1 30 LYS 30 30 30 LYS LYS A . n A 1 31 MET 31 31 31 MET MET A . n A 1 32 GLY 32 32 32 GLY GLY A . n A 1 33 ASP 33 33 33 ASP ASP A . n A 1 34 ARG 34 34 34 ARG ARG A . n A 1 35 VAL 35 35 35 VAL VAL A . n A 1 36 ARG 36 36 36 ARG ARG A . n A 1 37 ALA 37 37 37 ALA ALA A . n A 1 38 ALA 38 38 38 ALA ALA A . n A 1 39 HIS 39 39 39 HIS HIS A . n A 1 40 PRO 40 40 40 PRO PRO A . n A 1 41 ASP 41 41 41 ASP ASP A . n A 1 42 ILE 42 42 42 ILE ILE A . n A 1 43 PRO 43 43 43 PRO PRO A . n A 1 44 VAL 44 44 44 VAL VAL A . n A 1 45 ARG 45 45 45 ARG ARG A . n A 1 46 TRP 46 46 46 TRP TRP A . n A 1 47 ALA 47 47 47 ALA ALA A . n A 1 48 TYR 48 48 48 TYR TYR A . n A 1 49 THR 49 49 49 THR THR A . n A 1 50 ALA 50 50 50 ALA ALA A . n A 1 51 LYS 51 51 51 LYS LYS A . n A 1 52 MET 52 52 52 MET MET A . n A 1 53 ILE 53 53 53 ILE ILE A . n A 1 54 ARG 54 54 54 ARG ARG A . n A 1 55 ALA 55 55 55 ALA ALA A . n A 1 56 LYS 56 56 56 LYS LYS A . n A 1 57 LEU 57 57 57 LEU LEU A . n A 1 58 ARG 58 58 58 ARG ARG A . n A 1 59 ALA 59 59 59 ALA ALA A . n A 1 60 GLU 60 60 60 GLU GLU A . n A 1 61 GLY 61 61 61 GLY GLY A . n A 1 62 ILE 62 62 62 ILE ILE A . n A 1 63 ALA 63 63 63 ALA ALA A . n A 1 64 ALA 64 64 64 ALA ALA A . n A 1 65 PRO 65 65 65 PRO PRO A . n A 1 66 SER 66 66 66 SER SER A . n A 1 67 PRO 67 67 67 PRO PRO A . n A 1 68 ALA 68 68 68 ALA ALA A . n A 1 69 GLU 69 69 69 GLU GLU A . n A 1 70 ALA 70 70 70 ALA ALA A . n A 1 71 LEU 71 71 71 LEU LEU A . n A 1 72 ALA 72 72 72 ALA ALA A . n A 1 73 GLY 73 73 73 GLY GLY A . n A 1 74 MET 74 74 74 MET MET A . n A 1 75 ALA 75 75 75 ALA ALA A . n A 1 76 GLU 76 76 76 GLU GLU A . n A 1 77 GLU 77 77 77 GLU GLU A . n A 1 78 GLY 78 78 78 GLY GLY A . n A 1 79 PHE 79 79 79 PHE PHE A . n A 1 80 THR 80 80 80 THR THR A . n A 1 81 HIS 81 81 81 HIS HIS A . n A 1 82 VAL 82 82 82 VAL VAL A . n A 1 83 ALA 83 83 83 ALA ALA A . n A 1 84 VAL 84 84 84 VAL VAL A . n A 1 85 GLN 85 85 85 GLN GLN A . n A 1 86 SER 86 86 86 SER SER A . n A 1 87 LEU 87 87 87 LEU LEU A . n A 1 88 HIS 88 88 88 HIS HIS A . n A 1 89 THR 89 89 89 THR THR A . n A 1 90 ILE 90 90 90 ILE ILE A . n A 1 91 PRO 91 91 91 PRO PRO A . n A 1 92 GLY 92 92 92 GLY GLY A . n A 1 93 GLU 93 93 93 GLU GLU A . n A 1 94 GLU 94 94 94 GLU GLU A . n A 1 95 PHE 95 95 95 PHE PHE A . n A 1 96 HIS 96 96 96 HIS HIS A . n A 1 97 GLY 97 97 97 GLY GLY A . n A 1 98 LEU 98 98 98 LEU LEU A . n A 1 99 LEU 99 99 99 LEU LEU A . n A 1 100 GLU 100 100 100 GLU GLU A . n A 1 101 THR 101 101 101 THR THR A . n A 1 102 ALA 102 102 102 ALA ALA A . n A 1 103 HIS 103 103 103 HIS HIS A . n A 1 104 ALA 104 104 104 ALA ALA A . n A 1 105 PHE 105 105 105 PHE PHE A . n A 1 106 GLN 106 106 106 GLN GLN A . n A 1 107 GLY 107 107 107 GLY GLY A . n A 1 108 LEU 108 108 108 LEU LEU A . n A 1 109 PRO 109 109 109 PRO PRO A . n A 1 110 LYS 110 110 110 LYS LYS A . n A 1 111 GLY 111 111 111 GLY GLY A . n A 1 112 LEU 112 112 112 LEU LEU A . n A 1 113 THR 113 113 113 THR THR A . n A 1 114 ARG 114 114 114 ARG ARG A . n A 1 115 VAL 115 115 115 VAL VAL A . n A 1 116 SER 116 116 116 SER SER A . n A 1 117 VAL 117 117 117 VAL VAL A . n A 1 118 GLY 118 118 118 GLY GLY A . n A 1 119 LEU 119 119 119 LEU LEU A . n A 1 120 PRO 120 120 120 PRO PRO A . n A 1 121 LEU 121 121 121 LEU LEU A . n A 1 122 ILE 122 122 122 ILE ILE A . n A 1 123 GLY 123 123 123 GLY GLY A . n A 1 124 THR 124 124 124 THR THR A . n A 1 125 THR 125 125 125 THR THR A . n A 1 126 ALA 126 126 126 ALA ALA A . n A 1 127 ASP 127 127 127 ASP ASP A . n A 1 128 ALA 128 128 128 ALA ALA A . n A 1 129 GLU 129 129 129 GLU GLU A . n A 1 130 ALA 130 130 130 ALA ALA A . n A 1 131 VAL 131 131 131 VAL VAL A . n A 1 132 ALA 132 132 132 ALA ALA A . n A 1 133 GLU 133 133 133 GLU GLU A . n A 1 134 ALA 134 134 134 ALA ALA A . n A 1 135 LEU 135 135 135 LEU LEU A . n A 1 136 VAL 136 136 136 VAL VAL A . n A 1 137 ALA 137 137 137 ALA ALA A . n A 1 138 SER 138 138 138 SER SER A . n A 1 139 LEU 139 139 139 LEU LEU A . n A 1 140 PRO 140 140 140 PRO PRO A . n A 1 141 ALA 141 141 141 ALA ALA A . n A 1 142 ASP 142 142 142 ASP ASP A . n A 1 143 ARG 143 143 143 ARG ARG A . n A 1 144 LYS 144 144 144 LYS LYS A . n A 1 145 PRO 145 145 145 PRO PRO A . n A 1 146 GLY 146 146 146 GLY GLY A . n A 1 147 GLU 147 147 147 GLU GLU A . n A 1 148 PRO 148 148 148 PRO PRO A . n A 1 149 VAL 149 149 149 VAL VAL A . n A 1 150 VAL 150 150 150 VAL VAL A . n A 1 151 PHE 151 151 151 PHE PHE A . n A 1 152 MET 152 152 152 MET MET A . n A 1 153 GLY 153 153 153 GLY GLY A . n A 1 154 HIS 154 154 154 HIS HIS A . n A 1 155 GLY 155 155 155 GLY GLY A . n A 1 156 THR 156 156 156 THR THR A . n A 1 157 PRO 157 157 157 PRO PRO A . n A 1 158 HIS 158 158 158 HIS HIS A . n A 1 159 PRO 159 159 159 PRO PRO A . n A 1 160 ALA 160 160 160 ALA ALA A . n A 1 161 ASP 161 161 161 ASP ASP A . n A 1 162 ILE 162 162 162 ILE ILE A . n A 1 163 CYS 163 163 163 CYS CYS A . n A 1 164 TYR 164 164 164 TYR TYR A . n A 1 165 PRO 165 165 165 PRO PRO A . n A 1 166 GLY 166 166 166 GLY GLY A . n A 1 167 LEU 167 167 167 LEU LEU A . n A 1 168 GLN 168 168 168 GLN GLN A . n A 1 169 TYR 169 169 169 TYR TYR A . n A 1 170 TYR 170 170 170 TYR TYR A . n A 1 171 LEU 171 171 171 LEU LEU A . n A 1 172 TRP 172 172 172 TRP TRP A . n A 1 173 ARG 173 173 173 ARG ARG A . n A 1 174 LEU 174 174 174 LEU LEU A . n A 1 175 ASP 175 175 175 ASP ASP A . n A 1 176 PRO 176 176 176 PRO PRO A . n A 1 177 ASP 177 177 177 ASP ASP A . n A 1 178 LEU 178 178 178 LEU LEU A . n A 1 179 LEU 179 179 179 LEU LEU A . n A 1 180 VAL 180 180 180 VAL VAL A . n A 1 181 GLY 181 181 181 GLY GLY A . n A 1 182 THR 182 182 182 THR THR A . n A 1 183 VAL 183 183 183 VAL VAL A . n A 1 184 GLU 184 184 184 GLU GLU A . n A 1 185 GLY 185 185 185 GLY GLY A . n A 1 186 SER 186 186 186 SER SER A . n A 1 187 PRO 187 187 187 PRO PRO A . n A 1 188 SER 188 188 188 SER SER A . n A 1 189 PHE 189 189 189 PHE PHE A . n A 1 190 ASP 190 190 190 ASP ASP A . n A 1 191 ASN 191 191 191 ASN ASN A . n A 1 192 VAL 192 192 192 VAL VAL A . n A 1 193 MET 193 193 193 MET MET A . n A 1 194 ALA 194 194 194 ALA ALA A . n A 1 195 GLU 195 195 195 GLU GLU A . n A 1 196 LEU 196 196 196 LEU LEU A . n A 1 197 ASP 197 197 197 ASP ASP A . n A 1 198 VAL 198 198 198 VAL VAL A . n A 1 199 ARG 199 199 199 ARG ARG A . n A 1 200 LYS 200 200 200 LYS LYS A . n A 1 201 ALA 201 201 201 ALA ALA A . n A 1 202 LYS 202 202 202 LYS LYS A . n A 1 203 ARG 203 203 203 ARG ARG A . n A 1 204 VAL 204 204 204 VAL VAL A . n A 1 205 TRP 205 205 205 TRP TRP A . n A 1 206 LEU 206 206 206 LEU LEU A . n A 1 207 MET 207 207 207 MET MET A . n A 1 208 PRO 208 208 208 PRO PRO A . n A 1 209 LEU 209 209 209 LEU LEU A . n A 1 210 MET 210 210 210 MET MET A . n A 1 211 ALA 211 211 211 ALA ALA A . n A 1 212 VAL 212 212 212 VAL VAL A . n A 1 213 ALA 213 213 213 ALA ALA A . n A 1 214 GLY 214 214 214 GLY GLY A . n A 1 215 ASP 215 215 215 ASP ASP A . n A 1 216 HIS 216 216 216 HIS HIS A . n A 1 217 ALA 217 217 217 ALA ALA A . n A 1 218 ARG 218 218 218 ARG ARG A . n A 1 219 ASN 219 219 219 ASN ASN A . n A 1 220 ASP 220 220 220 ASP ASP A . n A 1 221 MET 221 221 221 MET MET A . n A 1 222 ALA 222 222 222 ALA ALA A . n A 1 223 GLY 223 223 223 GLY GLY A . n A 1 224 ASP 224 224 224 ASP ASP A . n A 1 225 GLU 225 225 225 GLU GLU A . n A 1 226 ASP 226 226 226 ASP ASP A . n A 1 227 ASP 227 227 227 ASP ASP A . n A 1 228 SER 228 228 228 SER SER A . n A 1 229 TRP 229 229 229 TRP TRP A . n A 1 230 THR 230 230 230 THR THR A . n A 1 231 SER 231 231 231 SER SER A . n A 1 232 GLN 232 232 232 GLN GLN A . n A 1 233 LEU 233 233 233 LEU LEU A . n A 1 234 ALA 234 234 234 ALA ALA A . n A 1 235 ARG 235 235 235 ARG ARG A . n A 1 236 ARG 236 236 236 ARG ARG A . n A 1 237 GLY 237 237 237 GLY GLY A . n A 1 238 ILE 238 238 238 ILE ILE A . n A 1 239 GLU 239 239 239 GLU GLU A . n A 1 240 ALA 240 240 240 ALA ALA A . n A 1 241 LYS 241 241 241 LYS LYS A . n A 1 242 PRO 242 242 242 PRO PRO A . n A 1 243 VAL 243 243 243 VAL VAL A . n A 1 244 LEU 244 244 244 LEU LEU A . n A 1 245 HIS 245 245 245 HIS HIS A . n A 1 246 GLY 246 246 246 GLY GLY A . n A 1 247 THR 247 247 247 THR THR A . n A 1 248 ALA 248 248 248 ALA ALA A . n A 1 249 GLU 249 249 249 GLU GLU A . n A 1 250 SER 250 250 250 SER SER A . n A 1 251 ASP 251 251 251 ASP ASP A . n A 1 252 ALA 252 252 252 ALA ALA A . n A 1 253 VAL 253 253 253 VAL VAL A . n A 1 254 ALA 254 254 254 ALA ALA A . n A 1 255 ALA 255 255 255 ALA ALA A . n A 1 256 ILE 256 256 256 ILE ILE A . n A 1 257 TRP 257 257 257 TRP TRP A . n A 1 258 LEU 258 258 258 LEU LEU A . n A 1 259 ARG 259 259 259 ARG ARG A . n A 1 260 HIS 260 260 260 HIS HIS A . n A 1 261 LEU 261 261 261 LEU LEU A . n A 1 262 ASP 262 262 262 ASP ASP A . n A 1 263 ASP 263 263 263 ASP ASP A . n A 1 264 ALA 264 264 264 ALA ALA A . n A 1 265 LEU 265 265 265 LEU LEU A . n A 1 266 ALA 266 266 266 ALA ALA A . n A 1 267 ARG 267 267 267 ARG ARG A . n A 1 268 LEU 268 268 268 LEU LEU A . n A 1 269 ASN 269 269 269 ASN ASN A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM 1 1270 1270 HEM HEM A . C 3 CO 1 1271 1271 CO CO A . D 4 SO4 1 1272 1272 SO4 SO4 A . E 4 SO4 1 1273 1273 SO4 SO4 A . F 4 SO4 1 1274 1274 SO4 SO4 A . G 5 GOL 1 1275 1275 GOL GOL A . H 5 GOL 1 1276 1276 GOL GOL A . I 5 GOL 1 1277 1277 GOL GOL A . J 4 SO4 1 1278 1278 SO4 SO4 A . K 4 SO4 1 1279 1279 SO4 SO4 A . L 4 SO4 1 1280 1280 SO4 SO4 A . M 4 SO4 1 1281 1281 SO4 SO4 A . N 4 SO4 1 1282 1282 SO4 SO4 A . O 6 NA 1 1283 1283 NA NA A . P 7 CL 1 1284 1284 CL CL A . Q 8 PER 1 1285 1285 PER PER A . R 9 HOH 1 2001 2001 HOH HOH A . R 9 HOH 2 2002 2002 HOH HOH A . R 9 HOH 3 2003 2003 HOH HOH A . R 9 HOH 4 2004 2004 HOH HOH A . R 9 HOH 5 2005 2005 HOH HOH A . R 9 HOH 6 2006 2006 HOH HOH A . R 9 HOH 7 2007 2007 HOH HOH A . R 9 HOH 8 2008 2008 HOH HOH A . R 9 HOH 9 2009 2009 HOH HOH A . R 9 HOH 10 2010 2010 HOH HOH A . R 9 HOH 11 2011 2011 HOH HOH A . R 9 HOH 12 2012 2012 HOH HOH A . R 9 HOH 13 2013 2013 HOH HOH A . R 9 HOH 14 2014 2014 HOH HOH A . R 9 HOH 15 2015 2015 HOH HOH A . R 9 HOH 16 2016 2016 HOH HOH A . R 9 HOH 17 2017 2017 HOH HOH A . R 9 HOH 18 2018 2018 HOH HOH A . R 9 HOH 19 2019 2019 HOH HOH A . R 9 HOH 20 2020 2020 HOH HOH A . R 9 HOH 21 2021 2021 HOH HOH A . R 9 HOH 22 2022 2022 HOH HOH A . R 9 HOH 23 2023 2023 HOH HOH A . R 9 HOH 24 2024 2024 HOH HOH A . R 9 HOH 25 2025 2025 HOH HOH A . R 9 HOH 26 2026 2026 HOH HOH A . R 9 HOH 27 2027 2027 HOH HOH A . R 9 HOH 28 2028 2028 HOH HOH A . R 9 HOH 29 2029 2029 HOH HOH A . R 9 HOH 30 2030 2030 HOH HOH A . R 9 HOH 31 2031 2031 HOH HOH A . R 9 HOH 32 2032 2032 HOH HOH A . R 9 HOH 33 2033 2033 HOH HOH A . R 9 HOH 34 2034 2034 HOH HOH A . R 9 HOH 35 2035 2035 HOH HOH A . R 9 HOH 36 2036 2036 HOH HOH A . R 9 HOH 37 2037 2037 HOH HOH A . R 9 HOH 38 2038 2038 HOH HOH A . R 9 HOH 39 2039 2039 HOH HOH A . R 9 HOH 40 2040 2040 HOH HOH A . R 9 HOH 41 2041 2041 HOH HOH A . R 9 HOH 42 2042 2042 HOH HOH A . R 9 HOH 43 2043 2043 HOH HOH A . R 9 HOH 44 2044 2044 HOH HOH A . R 9 HOH 45 2045 2045 HOH HOH A . R 9 HOH 46 2046 2046 HOH HOH A . R 9 HOH 47 2047 2047 HOH HOH A . R 9 HOH 48 2048 2048 HOH HOH A . R 9 HOH 49 2049 2049 HOH HOH A . R 9 HOH 50 2050 2050 HOH HOH A . R 9 HOH 51 2051 2051 HOH HOH A . R 9 HOH 52 2052 2052 HOH HOH A . R 9 HOH 53 2053 2053 HOH HOH A . R 9 HOH 54 2054 2054 HOH HOH A . R 9 HOH 55 2055 2055 HOH HOH A . R 9 HOH 56 2056 2056 HOH HOH A . R 9 HOH 57 2057 2057 HOH HOH A . R 9 HOH 58 2058 2058 HOH HOH A . R 9 HOH 59 2059 2059 HOH HOH A . R 9 HOH 60 2060 2060 HOH HOH A . R 9 HOH 61 2061 2061 HOH HOH A . R 9 HOH 62 2062 2062 HOH HOH A . R 9 HOH 63 2063 2063 HOH HOH A . R 9 HOH 64 2064 2064 HOH HOH A . R 9 HOH 65 2065 2065 HOH HOH A . R 9 HOH 66 2066 2066 HOH HOH A . R 9 HOH 67 2067 2067 HOH HOH A . R 9 HOH 68 2068 2068 HOH HOH A . R 9 HOH 69 2069 2069 HOH HOH A . R 9 HOH 70 2070 2070 HOH HOH A . R 9 HOH 71 2071 2071 HOH HOH A . R 9 HOH 72 2072 2072 HOH HOH A . R 9 HOH 73 2073 2073 HOH HOH A . R 9 HOH 74 2074 2074 HOH HOH A . R 9 HOH 75 2075 2075 HOH HOH A . R 9 HOH 76 2076 2076 HOH HOH A . R 9 HOH 77 2077 2077 HOH HOH A . R 9 HOH 78 2078 2078 HOH HOH A . R 9 HOH 79 2079 2079 HOH HOH A . R 9 HOH 80 2080 2080 HOH HOH A . R 9 HOH 81 2081 2081 HOH HOH A . R 9 HOH 82 2082 2082 HOH HOH A . R 9 HOH 83 2083 2083 HOH HOH A . R 9 HOH 84 2084 2084 HOH HOH A . R 9 HOH 85 2085 2085 HOH HOH A . R 9 HOH 86 2086 2086 HOH HOH A . R 9 HOH 87 2087 2087 HOH HOH A . R 9 HOH 88 2088 2088 HOH HOH A . R 9 HOH 89 2089 2089 HOH HOH A . R 9 HOH 90 2090 2090 HOH HOH A . R 9 HOH 91 2091 2091 HOH HOH A . R 9 HOH 92 2092 2092 HOH HOH A . R 9 HOH 93 2093 2093 HOH HOH A . R 9 HOH 94 2094 2094 HOH HOH A . R 9 HOH 95 2095 2095 HOH HOH A . R 9 HOH 96 2096 2096 HOH HOH A . R 9 HOH 97 2097 2097 HOH HOH A . R 9 HOH 98 2098 2098 HOH HOH A . R 9 HOH 99 2099 2099 HOH HOH A . R 9 HOH 100 2100 2100 HOH HOH A . R 9 HOH 101 2101 2101 HOH HOH A . R 9 HOH 102 2102 2102 HOH HOH A . R 9 HOH 103 2103 2103 HOH HOH A . R 9 HOH 104 2104 2104 HOH HOH A . R 9 HOH 105 2105 2105 HOH HOH A . R 9 HOH 106 2106 2106 HOH HOH A . R 9 HOH 107 2107 2107 HOH HOH A . R 9 HOH 108 2108 2108 HOH HOH A . R 9 HOH 109 2109 2109 HOH HOH A . R 9 HOH 110 2110 2110 HOH HOH A . R 9 HOH 111 2111 2111 HOH HOH A . R 9 HOH 112 2112 2112 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 17730 ? 1 MORE -654.9 ? 1 'SSA (A^2)' 41440 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 6_565 x,-y+1,-z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 121.4410000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 3 'crystal symmetry operation' 2_565 -x,-y+1,z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 121.4410000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4 'crystal symmetry operation' 5_555 -x,y,-z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 NE2 ? A HIS 96 ? A HIS 96 ? 1_555 FE ? B HEM . ? A HEM 1270 ? 1_555 NA ? B HEM . ? A HEM 1270 ? 1_555 98.2 ? 2 NE2 ? A HIS 96 ? A HIS 96 ? 1_555 FE ? B HEM . ? A HEM 1270 ? 1_555 NB ? B HEM . ? A HEM 1270 ? 1_555 87.3 ? 3 NA ? B HEM . ? A HEM 1270 ? 1_555 FE ? B HEM . ? A HEM 1270 ? 1_555 NB ? B HEM . ? A HEM 1270 ? 1_555 99.8 ? 4 NE2 ? A HIS 96 ? A HIS 96 ? 1_555 FE ? B HEM . ? A HEM 1270 ? 1_555 NC ? B HEM . ? A HEM 1270 ? 1_555 92.1 ? 5 NA ? B HEM . ? A HEM 1270 ? 1_555 FE ? B HEM . ? A HEM 1270 ? 1_555 NC ? B HEM . ? A HEM 1270 ? 1_555 169.4 ? 6 NB ? B HEM . ? A HEM 1270 ? 1_555 FE ? B HEM . ? A HEM 1270 ? 1_555 NC ? B HEM . ? A HEM 1270 ? 1_555 78.1 ? 7 NE2 ? A HIS 96 ? A HIS 96 ? 1_555 FE ? B HEM . ? A HEM 1270 ? 1_555 ND ? B HEM . ? A HEM 1270 ? 1_555 99.1 ? 8 NA ? B HEM . ? A HEM 1270 ? 1_555 FE ? B HEM . ? A HEM 1270 ? 1_555 ND ? B HEM . ? A HEM 1270 ? 1_555 86.8 ? 9 NB ? B HEM . ? A HEM 1270 ? 1_555 FE ? B HEM . ? A HEM 1270 ? 1_555 ND ? B HEM . ? A HEM 1270 ? 1_555 170.1 ? 10 NC ? B HEM . ? A HEM 1270 ? 1_555 FE ? B HEM . ? A HEM 1270 ? 1_555 ND ? B HEM . ? A HEM 1270 ? 1_555 94.1 ? 11 NE2 ? A HIS 96 ? A HIS 96 ? 1_555 FE ? B HEM . ? A HEM 1270 ? 1_555 NE2 ? A HIS 96 ? A HIS 96 ? 5_555 169.8 ? 12 NA ? B HEM . ? A HEM 1270 ? 1_555 FE ? B HEM . ? A HEM 1270 ? 1_555 NE2 ? A HIS 96 ? A HIS 96 ? 5_555 91.5 ? 13 NB ? B HEM . ? A HEM 1270 ? 1_555 FE ? B HEM . ? A HEM 1270 ? 1_555 NE2 ? A HIS 96 ? A HIS 96 ? 5_555 88.1 ? 14 NC ? B HEM . ? A HEM 1270 ? 1_555 FE ? B HEM . ? A HEM 1270 ? 1_555 NE2 ? A HIS 96 ? A HIS 96 ? 5_555 78.1 ? 15 ND ? B HEM . ? A HEM 1270 ? 1_555 FE ? B HEM . ? A HEM 1270 ? 1_555 NE2 ? A HIS 96 ? A HIS 96 ? 5_555 84.3 ? 16 O2 ? Q PER . ? A PER 1285 ? 1_555 CO ? C CO . ? A CO 1271 ? 1_555 NE2 ? A HIS 216 ? A HIS 216 ? 1_555 85.6 ? 17 O2 ? Q PER . ? A PER 1285 ? 1_555 CO ? C CO . ? A CO 1271 ? 1_555 O1 ? Q PER . ? A PER 1285 ? 1_555 32.6 ? 18 NE2 ? A HIS 216 ? A HIS 216 ? 1_555 CO ? C CO . ? A CO 1271 ? 1_555 O1 ? Q PER . ? A PER 1285 ? 1_555 107.5 ? 19 O2 ? Q PER . ? A PER 1285 ? 1_555 CO ? C CO . ? A CO 1271 ? 1_555 O ? R HOH . ? A HOH 2106 ? 1_555 96.7 ? 20 NE2 ? A HIS 216 ? A HIS 216 ? 1_555 CO ? C CO . ? A CO 1271 ? 1_555 O ? R HOH . ? A HOH 2106 ? 1_555 82.6 ? 21 O1 ? Q PER . ? A PER 1285 ? 1_555 CO ? C CO . ? A CO 1271 ? 1_555 O ? R HOH . ? A HOH 2106 ? 1_555 122.5 ? 22 O2 ? Q PER . ? A PER 1285 ? 1_555 CO ? C CO . ? A CO 1271 ? 1_555 NE2 ? A HIS 154 ? A HIS 154 ? 1_555 169.3 ? 23 NE2 ? A HIS 216 ? A HIS 216 ? 1_555 CO ? C CO . ? A CO 1271 ? 1_555 NE2 ? A HIS 154 ? A HIS 154 ? 1_555 98.7 ? 24 O1 ? Q PER . ? A PER 1285 ? 1_555 CO ? C CO . ? A CO 1271 ? 1_555 NE2 ? A HIS 154 ? A HIS 154 ? 1_555 150.2 ? 25 O ? R HOH . ? A HOH 2106 ? 1_555 CO ? C CO . ? A CO 1271 ? 1_555 NE2 ? A HIS 154 ? A HIS 154 ? 1_555 74.2 ? 26 O2 ? E SO4 . ? A SO4 1273 ? 1_555 NA ? O NA . ? A NA 1283 ? 1_555 OH ? A TYR 164 ? A TYR 164 ? 1_555 122.2 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-12-22 2 'Structure model' 1 1 2011-05-08 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.5.0063 ? 1 XDS 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 SHELX phasing . ? 4 # _pdbx_entry_details.entry_id 2XVZ _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THE SEQUENCE ON THE DATABASE HAS A SIGNAL PEPTIDE, THE SEQUENCE OF THE STRUCTURE PRESENTED STARTS ON RESIDUE 29 ; # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CA A LEU 99 ? ? CB A LEU 99 ? ? CG A LEU 99 ? ? 132.48 115.30 17.18 2.30 N 2 1 NE A ARG 114 ? ? CZ A ARG 114 ? ? NH1 A ARG 114 ? ? 123.46 120.30 3.16 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LEU A 87 ? ? -99.79 33.90 2 1 LYS A 110 ? ? 58.95 13.68 3 1 PRO A 120 ? ? -68.54 -174.61 4 1 ASP A 175 ? ? -164.03 118.95 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 1 ? A GLY 1 2 1 Y 1 A HIS 2 ? A HIS 2 3 1 Y 1 A GLY 3 ? A GLY 3 4 1 Y 1 A ALA 4 ? A ALA 4 5 1 Y 1 A PRO 5 ? A PRO 5 6 1 Y 1 A LYS 6 ? A LYS 6 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'PROTOPORPHYRIN IX CONTAINING FE' HEM 3 'COBALT (II) ION' CO 4 'SULFATE ION' SO4 5 GLYCEROL GOL 6 'SODIUM ION' NA 7 'CHLORIDE ION' CL 8 'PEROXIDE ION' PER 9 water HOH #